Editor’s Choice Articles

The Mediterranean Sea hosts a great Nudibranchia diversity and has proved to be particularly intriguing in the case of the family Onchidorididae, a group of dorid nudibranchs that lately increased its diversity with the addition of one recently described Mediterranean species. The Onchidorididae family has a troubled systematic history to date, characterized by uncertainties and genera that are considered valid or not, according to the different authors. This confused taxonomy reflects the lack of a broad and comprehensive view on the phylogenetic relationships occurring between Onchidorididae members, an incorrect interpretation of the diagnostic morphological characters, and a poor knowledge of important biological aspects characterizing the different genera included in the family. To shed some light on the systematics of Onchidorididae, an integrative taxonomic revision was carried out involving morphological, ecological, and molecular analyses on an updated dataset. Mediterranean specimens and species were added to the dataset of the already known Onchidorididae and a new species from the Adriatic Sea (Central Mediterranean Sea) is described here. Furthermore, historical controversies are clarified due to the discovery of new important synapomorphies useful to define genera belonging to the Onchidorididae family and to describe a new genus. Finally, the taxonomic status of all the known Onchidorididae species is investigated and discussed, filling the gap of knowledge on neglected species. Full article

The world-wide fauna of the genus Cardiocondyla is assessed to have 79 currently recognized species and is subdivided into 14 informal species groups plus three monotypical clades. It is argued that the phylogenetic placement of Cardiocondyla next to the genus Ocymyrmex Emery, 1886 as proposed by Blaimer et al. (2018) is doubtful. The main body of the paper is a species-level taxonomic revision of those six species groups and the one monotypical clade which have their centers of origin in the Oriental and Australasian regions. The fauna of this area comprises 26 species eleven of which are described as new: Cardiocondyla schulzi n.sp., C. argentea n.sp., C. semiargentea n.sp., C. argyrotricha n.sp., C. latifrons n.sp., C. micropila n.sp., C. allonivalis n.sp., C. excavata n.sp., C. goroka n.sp., C. subspina n.sp. and C. sulcata n.sp. Recognized as junior synonyms were: Cardiocondyla tsukuyomi Terayama, 1999 and C. breviscapus Seifert, 2003 of C. minutior Forel, 1899 and C. brevispinosa (Donisthorpe, 1948) of C. paradoxa Emery, 1897. Each confirmed species is characterized by verbal descriptions, 18 numerically recorded phenotypic characters, z-stack images in three viewing positions, the key, a differential diagnosis and, if available, a brief life history. Exploratory and hypothesis-driven data analyses of phenotypic characters support the separation of the cryptic species Cardiocondyla minutior Forel, 1899, C. goa Seifert, 2003 and C. tjibodana Karavajev, 1935, two of which have dispersed as tramp species to the New World. Missing development of postzygotic isolation due to very strong prezygotic barriers is indicated in the closely related species Cardiocondyla latifrons n.sp. and C. micropila n.sp. which produce fertile hybrids in laboratory rearings but apparently do not hybridize in a natural context even if nesting in close neighborhood. The strong prezygotic isolation is supposed to be generated by the prevalence of intranidal mating and the difficulty for a mated heterospecific gyne to become accepted in a foreign colony. Full article

Wetland ecosystems are important habitats for the growth and survival of numerous terrestrial orchids in Europe. This study reviews the current knowledge on the orchids of wetland vegetation in the Central Balkans. The orchid flora was analyzed from taxonomic, phytogeographical, ecological and conservation aspects. The most important taxa include the two Balkan endemics (Dactylorhiza cordigera subsp. bosniaca and D. kalopissi subsp. macedonica) and the three subendemics of the Balkans and the Carpathians (Dactylorhiza cordigera subsp. cordigera, D. maculata subsp. transsilvanica and Gymnadenia frivaldii), as well as a considerable number of Central European, Eurasian and boreal orchid representatives. Several orchid taxa occurring in the wet meadows and fens of the Central Balkans have a southern limit of their distribution in this part of Europe, suggesting that wetlands are important refuges for them. In total, 33 orchid taxa were recorded in plant communities from five classes, 10 orders and 17 alliances. Most orchid taxa grow in the following wetland vegetation types: wet meadows (class Molinio-Arrhenatheretea, order Molinietalia caeruleae, alliances Molinion caeruleae, Deschampsion cespitosae and Calthion palustris); fens (class Scheuchzerio palustris-Caricetea fuscae, order Caricetalia fuscae, alliance Caricion fuscae); tall-herb vegetation along mountain streams and springs (class Mulgedio-Aconitetea); marshes and herb-land vegetation of freshwater or brackish water bodies (class Phragmito-Magnocaricetea). This study highlights the importance of serpentine and silicate wetland vegetation types as important habitats for the survival of terrestrial orchids. In addition, detailed taxonomic, ecological and chorological studies of the wetland orchids of the Central Balkans need to be carried out in order to establish a successful plan for their conservation. Full article

Invasive alien species are a major worldwide driver of biodiversity change. The current study lists verified records of non-indigenous species (NIS) in European marine waters until 2020, with the purpose of establishing a baseline, assessing trends, and discussing appropriate threshold values for good environmental status (GES) according to the relevant European legislation. All NIS records were verified by national experts and trends are presented in six-year assessment periods from 1970 to 2020 according to the European Union Marine Strategy Framework Directive. Altogether, 874 NIS have been introduced to European marine waters until 2020 with the Mediterranean Sea and North-East Atlantic Ocean hosting most of the introductions. Overall, the number of new introductions has steadily increased since 2000. The annual rate of new introductions reached 21 new NIS in European seas within the last six-year assessment period (2012–2017). This increase is likely due to increased human activities and research efforts that have intensified during the early 21st century within European Seas. As Europe seas are not environmentally, nor geographically homogenous, the setting of threshold values for assessing GES requires regional expertise. Further, once management measures are operational, pathway-specific threshold values would enable assessing the effectiveness of such measures. Full article

A detailed systematic account of Sepia (Hemisepius) typica, an endemic southern African species of cuttlefish, is presented. An analysis of morphological data (morphometric and meristic characters) suggests that S. typica is a single well-established species without morphs or subspecies. It is, however, highly variable, perhaps more so than other small sepiids from the region, and there are slight, but significant indications of population structure. Therefore, molecular biological studies based upon a large sample could help investigate broad genetic patterns in what morphologically appears to be a single highly variable species. Full article

Understanding how changes in species richness pattern correlate with range changes in different taxonomic and biogeographic groups is important for conservation because it allows for generalizations about which species are at greatest risk. Here, we assessed whether changes in species richness patterns result from generalized range shifts across taxonomic and biogeographic groups or from changes in specific subsets of species. Using data from 1988 and from 2010, we studied changes in distributional range of European dragonfly species, using outline distribution maps for all dragonflies combined and separately for taxonomic suborders (Zygoptera and Anisoptera) and biogeographic groups (Boreo-alpine, Eurasian, Mediterranean, and Tropical). The results demonstrated differing range dynamics for Zygoptera and Anisoptera, with Anisoptera driving local turnover in species richness to a greater extent than Zygoptera. The distributional range of Tropical and Mediterranean species had expanded to a much greater extent than that of Eurasian and Boreo-alpine species. Large-scale changes in species richness arose from several divergent, group-specific processes. Overall, local diversity especially declined in parts of southern and south-eastern Europe, reflecting local losses in multiple species rather than major range contractions among Mediterranean or Eurasian species. In fact, among the biogeographic groups, overall range declines were most prominent among Boreo-alpine species, highlighting the particular threat from climate change to this group. Full article

The eastern Iberian Peninsula is one of the places with most stegosaur fossils in all of Europe. In the present study, we describe new remains from six different fossil sites from the Upper Jurassic of the Villar del Arzobispo Formation (Kimmeridgian–Tithonian). The remains comprise: a left humerus from CT-61 (El Castellar, Teruel), a dermal spine from Puntal de la Magdalena (Alpuente, Valencia), two caudal neural arches and five caudal vertebrae from Cañada París (Alpuente, Valencia), two caudal centra from Alpuente (Valencia) and four caudal vertebrae from Barrihonda-El Humero (Riodeva, Teruel). The left humerus (CT-61-1) and dermal spine (MPA D-110) are referred to Stegosauria indet. The caudal vertebrae from Alpuente (Cañada París specimen, MPA-653 and MPA D-1086) are referred to cf. Dacentrurus sp. Finally, the caudal vertebrae from Riodeva (Barrihonda-El Humero specimen) are referred to Dacentrurus armatus and assigned to a previously known caudal series from this site. The presence of abundant localities with stegosaurian remains reaffirms the important role of stegosaur dinosaurs in Late Jurassic coastal ecosystems. Full article

Pachycormiformes is a diverse clade of stem-teleost actinopterygian fishes with a stratigraphic range from the Lower Jurassic (Toarcian) to Upper Cretaceous (Maastrichtian). The Toarcian Posidonienschiefer Formation in SW Germany records the earliest occurrence of †Pachycormiformes in the fossil record, offering unique and crucial insight into the clade’s origins and early adaptive radiation in the Early Jurassic. However, Early Jurassic taxa remain poorly studied with the taxonomic diversity and stratigraphic/geographic distributions insufficiently defined, thus masking the early part of this evolutionary radiation. Here, we report a new genus and species of pachycormid fish from the Posidonienschiefer Formation identified by phylogenetic analysis as falling in an intermediate position between Saurostomus and Ohmdenia at the base of the suspension-feeding clade. The new taxon shows a unique suite of cranial and postcranial characters. Several synapomorphies of the suspension-feeding clade, notably, the morphology of the hyomandibula, elongation of the skull, and reduced squamation are shared with the new taxon. The intestinal tract is exceptionally preserved, providing one of the most complete examples of pachycormid gastric anatomy. A comparison of the gastrointestinal anatomy of the new genus with other pachycormiforms indicates extensive taxonomic variation within the clade, in the configuration of both the midgut and spiral valve, potentially related to trophic divergence. The results highlight an underestimated high diversity and the rapid acquisition of trophic specializations in Pachycormiformes much earlier in the clade’s evolution than previously considered. Full article

Predator–prey interactions may be linked to different temporal or spatial patterns, including dynamics in prey populations. Therefore, understanding the adaptive capacity and how top predators respond to shifts in prey abundance and availability is crucial for their conservation. In this study, we investigated the diet pattern of the endangered Eastern Imperial Eagle facing long-term and large-scale changes. We studied the abundance variation of its profitable prey, sousliks, and how it reflected on eagle population trajectories in a regional and temporal context. We found a significant diet alteration expressed in large decrease of brown hare (β² = −0.83), poultry (β² = −0.81), gulls (β² = −0.71), and water birds (β² = −0.57), and an obvious increase of northern white-breasted hedgehog (β² = 0.61) and doves (β² = 0.60). Raptors and owls raised their participation (β² = 0.44), but white stork and different reptiles supplied more biomass. Abundance of European souslik decreased through the studied periods (adjusted R² = 0.25, p < 0.001) which accounted for the lower proportion of this prey in the eagle’s diet. Nevertheless, the eagle population successfully adapted and significantly increased (β² = 0.97) in most of the distribution area. The trophic strategy used by this top predator related to opportunistic foraging represents an ecological advantage that allows the species to adapt to different habitats and guarantees its future. The observed prolonged diet alteration could result in a significant negative attitude among different groups such as hunters, pigeon fanciers, and poultry keepers towards eagles. Therefore, enhanced communication with key stakeholders is needed. Conservation efforts should be focused also on the preservation of the species’ main foraging habitats and the restoration of damaged ones so as to maintain the good conditions of both primary food source and subsequent prey. Full article

Greece is situated in the East Mediterranean region and in the Balkan peninsula, i.e., a European biodiversity hotspot with high endemism in subterranean and freshwater fauna, highlighting the need to understand its biodiversity. A literature search was undertaken to present a checklist of cladocerans and copepods based on a compilation of published and current data, from 1892 up to 2022 from inland surfaces and subterranean water bodies from different regions of Greece. For Cladocera, 80 species were recorded (9 families with 35 genera). The most diverse families were Chydoridae (20 genera with 33 species) and Daphniidae (5 genera with 27 species). For copepoda, 134 taxa were recorded, in surface water bodies (12 families with 34 genera), subterranean water bodies (7 families with 27 genera), and parasitic copepods (3 families with 3 genera). The most diverse families in surface waters were Cyclopidae (15 genera with 41 taxa) and Diaptomidae (5 genera with 17 species), while those in subterranean waters were Cyclopidae (11 genera with 35 taxa) and Canthocamptidae (6 genera with 17 taxa). More species are expected to be discovered after sampling understudied regions, especially islands, as well as water bodies such as temporary pools, swamps, ditches, puddles, and the littoral parts of lakes, while molecular studies are needed to clarify various cases of complex taxonomy. Full article

Phylogenetic regression models for trait evolution incorporate phylogenetic trees for the analysis of comparative data, in order to study trait relationships among a group of related species. However, as such trees are estimated, it is unlikely that there will be no errors when describing the relationships among species. In particular, for polytomy trees, where the relationships within a particular clade of species are more/less certainly determined (hard/soft polytomy, respectively), results of comparative analyses obtained from models based on those phylogenetic trees may also be affected. In this study, through extensive simulations, the performances of several popular Gaussian process-based regression models (Brownian motion, BM; Ornstein–Uhlenbeck process, OU; early burst, EB), as well as branch-stretching models (Pagel’s $\lambda ,\delta ,\kappa$), were evaluated by assessing their fit and parameter estimation performance when soft polytomies are presented on either the root or a clade with insufficient phylogenetic information. Comparisons of the models are conducted by either assessing the accuracy of the estimator of regression and model parameters, or using a measure of fit (AIC, $r^2$, and mean square error). It is found that, although polytomy does not significantly impact the fit and parameter estimate within a specified model, distinguishable differences and effects may be observed among trees and models. In particular, Pagel $\lambda$ model and the OU model yield more accurate estimates and provide better fitting effects than the other models (BM, EB, $\delta$, $\kappa$). While correcting phylogeny is an essential step prior to analysis, users may also consider using more appropriate models when encountering the polytomy issue. Full article

Seamounts are globally important and essential ecosystems for supporting and maintaining marine biodiversity. In the Mallorca Channel, three prominent seamounts are present: Ausias March, Ses Olives and Emile Baudot. Currently, this area is being evaluated for inclusion in the Natura 2000 network. For this objective three surveys were conducted in the seamounts of the Mallorca Channel during July 2018 and July 2020. Samples of macro-invertebrates obtained in the deep sea revealed a rich fauna of Mollusca (68 species belonging to 40 families). New Mollusca occurrences included: four species of Gastropoda: Colus jeffreysianus, Cantrainea peloritana, Fusiturris similis, Gymnobela abyssorum, and seven species of Bivalvia: Pododesmus squama, Allogramma formosa, Asperarca nodulosa, Cetomya neaeroides, Spondylus gussonii, Haliris granulata and Policordia gemma. Where possible, the identification of these species was confirmed using the DNA barcoding method (sequencing of the cytochrome c oxidase subunit I). This study contributes towards filling the gap in knowledge of deep-sea mollusc fauna of the north-western Mediterranean. Full article

Fishes from the uppermost Norian Fuchsberg Quarry near Seinstedt are represented by two taxa that we interpret as a teleosteomorph (complete specimens) and actinistian (scales). Seinstedtia parva gen. et sp. nov. is described; although it was proposed as a possible semionotiform, this study reveals that Seinstedtia possesses a combination of teleosteomorph features, for instance: characteristic pholidophoriform-shaped cranial roof; fusion of skull roof bones; three dorso-posterior infraorbitals, including an enlarged infraorbital 3; one suborbital bone; movable premaxilla; and characteristic-shaped preopercle. In parallel, Seinstedtia possesses a head gently curved anteriorly, with lower jaw protruding slightly in front of upper jaw; supraorbital 1 forming most of antero-dorsal margin of circumorbital ring; one supramaxilla; three extrascapulae; cleithrum with short and broad lower arm; and enlarged clavicle. This character combination places Seinstedtia as a teleosteomorph, family incertae sedis. This fish (total length ca. 50 mm) and some pholidophorids (ca. 70 mm or less; Parapholidophorus nybelini and Pholidoctenus serianus) represent the known smallest teleosteomorphs that inhabited Europe during the Norian. The isolated scales are elasmoid of amioid type ornamented with the elongated ridges of actinistians. This diversity of teleosteomorphs and actinistians in Fuchsberg Quarry during the Triassic indicates a connection to a marine environment. Full article

While the potamodromous sterlet was common in the past throughout the Upper Danube in Germany and Austria, it nearly vanished in the second half of the 20th century. Until recently, only one small and isolated reproductive sub-population is known from the German–Austrian border. However, isolated remnants in another section downstream of Vienna, near the Austrian–Slovakian border, were discovered in 2014. An assessment of the population size is one of the most important prerequisites for conservation management. This study aims to assess the population sizes at both sites, using genetic pedigrees and comparison to mark–recapture data. A total of 193 samples collected from these populations between 2011 and 2021 have been investigated. In addition, 59 samples from captive stocks, 38 wild fish from downstream, and 247 genetic profiles from previous studies were used for comparison. Results show close relationships and intermittent reproduction on one site. Estimated populations based upon genetic pedigree are very small, and are consistent with mark–recapture results. Small population sizes of remnant populations have only limited, sporadic reproduction, as well as continual losses to outmigration support conservation actions for sturgeons in the Upper Danube, including the restoration of functional migration corridors. Full article

Geographically isolated wetlands provide a critical habitat for pond-breeding amphibians, a taxa of broad conservation concern. Global wetland loss and degradation has made restoration essential for amphibian conservation. Restoration goals typically include recovering the wetlands’ physiochemical, hydrological, and ecological functions. However, for pond-breeding amphibians, successful restoration should also result in sustained populations, which is difficult to assess and infrequently reported. In this paper, we review the available evidence that restoration of geographically isolated wetlands promotes pond-breeding amphibian occupancy and population persistence. We provide an overview of restoration practices addressing hydrology, vegetation, and ecological processes within these unique environments and across spatial scales. We then summarize the evidence, and discuss the limitations, for evaluating successful restoration within the context of amphibian conservation across these categories. Finally, we provide recommendations for researchers and practitioners to leverage prior successes and establish systematic data collection and dissemination. Moving restoration of wetlands for amphibian conservation forward will require more robust data collection and reporting. Full article

Although DNA barcodes-based operational taxonomic units (OTUs) are increasingly used in earthworm research, the relative efficiency of the different methods available to delimit them has not yet been tested on a comprehensive dataset. For this study, we used three datasets containing 651, 2304 and 4773 COI barcodes of earthworms from French Guiana, respectively, to compare five of these methods: two phylogenetic methods—namely Poisson Tree Processes (PTP) and General Mixed Yule Coalescence (GMYC)—and three distance matrix methods—namely Refined Single Linkage (RESL, used for assigning Barcode Index Numbers in the Barcode of Life Data systems), Automatic Barcode Gap Discovery (ABGD), and Assemble Species by Automatic Partitioning (ASAP). We found that phylogenetic approaches are less suitable for delineating OTUs from DNA barcodes in earthworms, especially for large sets of sequences. The computation times are unreasonable, they often fail to converge, and they also show a strong tendency to oversplit species. Among distance-based methods, RESL also has a clear tendency to oversplitting, while ABGD and ASAP are less prone to mismatches and have short computation times. ASAP requires less a priori knowledge for model parameterisation than AGBD, provides efficient graphical outputs, and has a much lower tendency to generate mismatches. Full article

The first fossil ostrich to have been named, by Milne-Edwards in 1869–1871, was Struthio asiaticus, a taxon based on a specimen collected by Colonel Colvin in the Siwaliks of India, consisting of associated postcranial elements (vertebrae, forelimb elements, a fragmentary tarsometatarsus and first phalanx of the third toe). Although it was described as least twice in some detail in the 19th century, the specimen has since then been interpreted in conflicting ways. A revision of the type material and its history shows that it came in all likelihood from the Siwaliks of present-day India, not Pakistan. The exact locality is unknown and the stratigraphic position of the specimen is uncertain (the frequent attribution to the Dhok Pathan Formation is not based on solid evidence). Contrary to what has sometimes been claimed, Struthio asiaticus was neither a small nor an especially large ostrich. It was apparently comparable in size with the modern S. camelus, but had slightly more robust cervical vertebrae and carpal bones. It seems to have been relatively short-toed. Because of the incompleteness of the material and uncertainties about its geological age, it is difficult to assess the place of Struthio asiaticus in the evolutionary history of the ostriches. Reports of Struthio asiaticus from Africa and north-eastern Asia are based on misinterpretations and should be discarded. Full article

Cordulegaster heros is a Balkan species with a disjunctive area extending into Central Europe. The population in the Chřiby Mts. in the southeastern Czech Republic is the northernmost population, and this population was intensively studied from 2010 to 2021 to establish basic data on its abundance. In the territory, the geomorphological characteristics of streams, characteristics of sediment in streams, habitat, emergence time, and period of flight were recorded, and population viability was evaluated. Larvae were recorded in 10 small forest streams (altitude of 235–426 m a.s.l.), with an average minimum width of 51.9 cm, an average maximum width of 177.7 cm, an average minimum depth of 6.5 cm, an average maximum depth (in pools) of 21 cm, and an average stream gradient of 1.9 grades. The sediments in each stream exhibited a grain size distribution with an average fraction less than 0.05 mm represented by 6.3%, a fraction of 0.05–0.1 mm represented by 21.1%, a fraction of 0.1–2 mm represented by 52.1%, a fraction of 2–5 mm represented by 12.1%, a fraction of 5–20 mm represented by 8%, and a fraction of 20+ mm represented by 0.3%. The larval abundance was 0.1–6.7 larvae per 1 m² of suitable sediment. The emergence period was recorded from 28 May to 1 July. The emergence site was categorized as larvae-dominated plant leave (57% of cases), plant stalks (21%), and tree trunks (17%). Exuviae occurred at an average of 154 cm at horizontal distance from the shore and an average vertical height of 77 cm above the ground. The average total distance of larval movement was 205 cm. The flight period in 2021 was recorded from 15 June to 11 August with peak flight activity noted in the third week of June. The northernmost population of C. heros was evaluated as viable and stable. Full article

A survey of the macrozoobenthos communities in the Maritsa River (South Bulgaria) was carried out in the summer of 2021. Benthic samples were collected and physicochemical parameters (water temperature, pH, conductivity, dissolved oxygen and nutrients) were measured at 15 sites located on the main river and its tributary system. The studied sites belonged to different river types and characterised the diversity of the ecological conditions—from unaffected to anthropogenically influenced river stretches. In addition, data from a study conducted in the summer of 2020 were used to analyse species–factor interactions in the river ecosystems and to assess the bio-indicative potential of the aquatic invertebrates. The dynamics of the taxonomic composition and abundance of the macrozoobenthos were analysed in relation to environmental factors. The physicochemical conditions of the water environment changed during the period of high water, which led to a reduction in the composition of the macrozoobenthos. Plecoptera and Trichoptera decreased in richness and abundance downstream and under human impacts. Ephemeroptera and Chironomidae were permanently present along the whole river. Oligochaeta increased in the lower river reaches and at sites with a greater amount of organic matter. The ecological status determined by the macrozoobenthos varied from high (site 1) to good, moderate and bad (site 13) at the studied sites. Full article

The Guadalquivir River Basin is one of the largest in the Iberian Peninsula and has a remarkable freshwater biodiversity. Although many studies on hydrological regimes or water quality have been conducted in this basin the biodiversity of freshwater fish, as well as their distribution and conservation status, has never been globally addressed as in other Iberian basins. In this context, we synthesized information on freshwater fish using field procedures and a bibliographic search. Fish distribution patterns at different spatial scales and general environmental conditions were analyzed as well as the conservation status of the fish community. We documented the presence of 40 species (20 native and 20 exotic) in the basin during the 20th century until today. However, we only captured 18 species during the field sampling, with a prevalence for any native species of less than 23% (except Luciobarbus sclateri). The highest species richness was found in mid reaches, while the lower reaches had very low diversity values. Around 50% of species are threatened; according to the IUCN, several species are declining at an alarming rate and others are probably extinct and/or their current status is unknown. Human disturbances during the last few decades have caused serious changes in fish distribution and consequently to their conservation status. Hydrological alterations, intensive agriculture and introduced species are probably the principal reasons for Guadalquivir’s ichthyofauna imperilment. Our study indicates an urgent and real need to identify important areas for fish conservation to guarantee a minimum fish biodiversity conservation over the long term, as well as effective strategies for fish recovery where it still is possible. Full article

Lowland tropical rainforests harbor the most diverse plant communities in the world, but the herbaceous plants of the understory are often overlooked. To address this knowledge gap, we asked to what extent the understory herbaceous community contributes to the species richness and phylogenetic diversity of plant communities by surveying a neotropical rainforest at Los Tuxtlas, Mexico. We used Gentry transects to characterize the woody overstory community, and line-intercepts within the same transects to survey understory herbs and subshrubs. We also used published phylogenies to calculate community phylogenetic diversity with and without the understory stratum. We found that the understory contained a diverse (23 species, or 22.1% of all species surveyed) and phylogenetically distinct plant community dominated by aroids (13 species) and ferns (4 species). Inclusion of the understory stratum increased total species richness by 28.4% but increased phylogenetic diversity by 41.4%. Additionally, in contrast to temperate forests, the understory plant community was much less diverse than the overstory, which contained 81 species > 1 cm dbh (77.9% of all species surveyed). This survey adds to the hitherto small body of literature comparing understory and overstory strata in tropical rainforests and reveals previously overlooked patterns of floristic diversity. Full article

Compared to their fossil counterparts, living brachiopods are investigated far less often, due to their occurrence in remote environments such as dark caves or deep environments. Due to the scarcity of studies targeting in situ brachiopods’ populations, large-scale information on their distribution and ecological preferences is still lacking, especially on hardgrounds. The extensive employment of remotely operated vehicles (ROVs), however, has opened up the chance to better explore this taxon’s diversity and ecology in the mesophotic and bathyal zones. The analysis of over 600 h of video footage collected from 624 sites, from 40 m to 1825 m, located along the Ligurian and Tyrrhenian coasts of Italy and the Sicily Channel, allowed for a large-scale investigation. The four identified species, Novocrania anomala, Gryphus vitreus, Megerlia truncata and Terebratulina retusa, emerged as common macrofaunal components of the explored habitats, especially between 150 m and 250 m, with high occurrences in the northern areas, especially on offshore seamounts. All species can form dense aggregations of individuals, with M. truncata showing the densest populations on steep rocky terraces (up to 773 individuals m⁻²). Except for G. vitreus, the only species also recorded on soft bottoms, the others were found exclusively on hardgrounds, with N. anomala showing a peculiar ability to exploit anthropogenic substrates such as terracotta amphorae. No stable species-specific associations were noted, even if numerous species were frequently observed together. Although brachiopods do not show the conspicuous tridimensionality of large filter-feeders, their substrate occupancy and their role in pelagic–benthic processes support their importance in deep-sea Mediterranean ecosystems. Full article

Genetic diversity analysis of crop genetic resources is a prerequisite for parental selection with suitable and complementary profiles for breeding. The objectives of this study were to determine genetic diversity present among okra accessions using simple sequence repeat (SSR) and complementary phenotypic markers and to select genetically divergent and superior parental accessions for pre-breeding. Twenty-six preliminarily selected okra accessions were assessed using nine highly polymorphic SSR markers and phenotyped under drought-stressed (DS) and non-stressed (NS) environmental conditions using a 13 × 2 alpha lattice design with two replications. Data were collected on the following eleven phenotypic traits: plant height (PH), days to 50% maturity (DTM), fresh pod length (FPL), dry pod weight (DPW), dry pod length (DPL), number of pods per plant (NPPP), pod yield per plant (PYPP), total above-ground biomass (AGB), harvest index (HI), root weight (RW), and root to shoot ratio (RSR). The SSR markers revealed an expected mean heterozygosity value of 0.54, indicating moderate genetic diversity among the tested okra accessions. Cluster analysis based on phenotypic and SSR markers differentiated the accessions into three distinct genetic groups. Wide phenotypic variation was observed for PH, FPL, NPPP, and PYPP under NS and DS conditions. PYPP was positively and significantly correlated with FPL (r = 0.81), ABG (r = 0.69), and HI (r = 0.67) under DS conditions, and FPL (r = 0.83) and AGB (r = 0.60) under NS conditions. Genetically complementary accessions such as LS04, LS05, LS06, LS07, LS08, LS10, LS11, LS15, LS18, LS23, LS24, and LS26 were identified for their high yield potential and related yield-improving traits under DS conditions. The identified accessions are recommended as parents for hybridization and selection programs to improve the yield potential of okra under drought-stressed environments. Full article

Fungal species are not immune to the threats facing animals and plants and are thus also prone to extinction. Yet, until 2015, fungi were nearly absent on the IUCN Red List. Recent efforts to identify fungal species under threat have significantly increased the number of published fungal assessments. The 597 species of fungi published in the 2022-1 IUCN Red List update (21 July 2022) are the basis for the first global review of the extinction risk of fungi and the threats they face. Nearly 50% of the assessed species are threatened, with 10% NT and 9% DD. For regions with a larger number of assessments (i.e., Europe, North America, and South America), subanalyses are provided. Data for lichenized and nonlichenized fungi are also summarized separately. Habitat loss/degradation followed by climate change, invasive species, and pollution are the primary identified threats. Bias in the data is discussed along with knowledge gaps. Suggested actions to address these gaps are provided along with a discussion of the use of assessments to facilitate on-the-ground conservation efforts. A research agenda for conservation mycology to assist in the assessment process and implementation of effective species/habitat management is presented. Full article

Photoautotrophic euendolithic microorganisms are ubiquitous where there are calcium carbonate substrates to bore into and sufficient light to sustain photosynthesis. The most diverse and abundant modern euendolithic communities can be found in the marine environment. Euendoliths, as microorganisms infesting inanimate substrates, were first thought to be ecologically irrelevant. Over the past three decades, numerous studies have subsequently shown that euendoliths can colonize living marine calcifying organisms, such as coral skeletons and bivalve shells, causing both sub-lethal and lethal damage. Moreover, under suitable environmental conditions, their presence can have surprising benefits for the host. Thus, infestation by photoautotrophic euendoliths has significant consequences for calcifying organisms that are of particular importance in the case of ecosystems underpinned by calcifying ecosystem engineers. In this review, we address the nature and diversity of marine euendoliths, as revealed recently through genetic techniques, their bioerosive mechanisms, how environmental conditions influence their incidence in marine ecosystems and their potential as bioindicators, how they affect live calcifiers, and the potential future of euendolithic infestation in the context of global climate change and ocean acidification. Full article

A bacterial strain S-51^T was isolated from rhizospheric forest soil at Kyonggi University during the study of previously uncultured bacterium. The phylogenetic analysis was based on 16S rRNA gene sequences that indicated that strain S-51^T belonged to the genus Rhizobium within the family Rhizobiaceae. The closest members of strain S-51^T were Rhizobium naphthalenivorans TSY03b^T (98.2% sequence similarity) and Rhizobium selenitireducens ATCC BAA-1503^T (98.1%). The sequence similarities of other members were <97.7%. The sole respiratory quinone was Q-10 and the major polar lipids were phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylcholine, and unidentified glycolipid. The principal fatty acids were summed feature 8 (C_18:1ω7c and/or C_18:1ω6c), cyclo-C_19:0ω8c, and C_18:0. The DNA G+C content was 63.1 mol%. The genome was 4930044 bp long and contained N₂-fixing genes, such as fixF, ntrC, and ptsN, in addition to respiratory nitrate reductase genes, such as narC, narG, narH, narI, and narJ. The average nucleotide identity (ANIu), average amino acid identity (AAI), and digital DNA-DNA hybridization (dDDH) relatedness between strain S-51^T and phylogenetically related species were ≤82.6, ≤83.6 and ≤25.3%, respectively, much lower than the species delineation thresholds. Based on the polyphasic taxonomic study, strain S-51^T represents a new species in the genus Rhizobium, for which the name Rhizobium terricola is proposed. The type strain is S-51^T (=KACC 19117^T = KEMB 9005-539^T = NBRC 112711^T). Full article

Fontainea is a plant genus with nine recognised species that occur across the tropical and subtropical rainforests of Australia, Papua New Guinea, New Caledonia, and Vanuatu. One of these species is cultivated commercially as the source of a cancer therapeutic, and several other species are under threat of extinction. Despite this, the phylogenetic relationships of the genus have not been explored. Our study assessed the phylogeny of seven Fontainea taxa from the Australian and Pacific Island complex using chloroplast DNA sequence data and reduced-representation genome sequencing. Maximum-likelihood and consensus network trees were used to infer the topology of phylogenetic relationships between species, which highlighted three distinct lineages and a number of sister species. Our results indicated that the geographically disjunct species Fontainea venosa and F. pancheri formed a sister group at the earliest position of divergence for the genus. The data also revealed that the vulnerable Fontainea australis and the critically endangered F. oraria form a sister subclade with evidence of some shared plastid genotypes. Generally, our phylogenetic reconstruction supports the modern taxonomical nomenclature. However, we suggest further accessions across several species may support improved genetic distinctions between the sister groups of Fontainea within the genus. Full article

We studied how range sizes and shifts in species ranges depend on niche breadth in European dragonflies. We measured range sizes and shifts over a 22-year period (1988–2010) and grouped species into those reproducing in permanent running (perennial lotic) water, permanent standing (perennial lentic) water, and temporary (running or standing) water. Running water species are more specialized and have narrower niches with a more fixed niche position than standing water species. Temporary water species are more generalist and have broader niches without a fixed niche position as clear as permanent water species because they may utilize both temporary and permanent habitats. Running water species have smaller ranges, and some of them have contracted their ranges more than species reproducing in standing or temporary waters; that is, they are especially at risk of habitat loss and climate change because of the joint effects of their narrow niches and small range sizes. Temporary water species track climate changes better than permanent water species. This suggests that ecological specialization may cause contemporary range shifts to lag behind changes in climate and resources. Furthermore, it indicates that recent changes in climate and human land use cause biotic homogenization, where specialists are outperformed and replaced by generalists. Full article

Vast numbers of microorganisms inhabit the mammalian gastrointestinal tract in a complex community referred to as the gut microbiome. An individual’s microbiome may be impacted by genetics, diet, and various environmental factors, and has been associated with many health states and diseases, though specific explanations are lacking. While these communities are well-studied in human populations, non-human primates (NHPs), in particular zoo-resident or captive NHPs, offer distinct advantages to increasing our understanding of factors that influence gut microbiome composition. Here, we characterize the gut microbiome composition of a phylogenetically diverse cohort of NHPs residing in the same urban zoo. We show that despite overlapping and controlled environmental contexts, gut microbiomes are still distinguished between NHP host species. However, when comparing the zoo cohort to wild NHPs, we show that captivity status strongly distinguishes zoo-resident NHPs from their wild counterparts, regardless of host phylogeny. Microbial orders unique to captive NHPs include taxa commonly present in human gut microbiomes. Together, these results demonstrate that differences between NHP species are strongly associated with gut microbiome composition and diversity, suggesting that species-specific approaches should be considered when investigating environmental factors’ influence on gut microbiome composition. Full article

Accelerating climate change is expected to cause range shifts of numerous taxa worldwide. While climatic projections and predicted consequences typically focus on the future (2050 or later), a measurable change in climatic conditions has occurred over recent decades. We investigate whether recent climate change has caused measurable shifts in suitable habitat for six North American species in the highly threatened genus Cypripedium (Orchidaceae). We constructed species distribution models using a maximum entropy approach from species occurrence records, 19 bioclimatic variables, land cover data, and soil data for two decadal time intervals (1980–1989 and 2010–2019). Models were compared between time intervals to assess shifts in locality, size, fragmentation, and mean elevation of suitable habitat. For all six congeners, the centroids of suitable habitat shifted between time intervals, although the directionality varied. There was, however, consistency among species within geographic regions. Consistent with our expectations, the optimal habitat for most species shifted to a higher elevation and for western species it shifted northwards. However, the habitat for one northwestern species shifted southwards and the habitat for eastern species converged on the Great Lakes region from different directions. This work illustrates the somewhat idiosyncratic responses of congeneric species to changing climatic conditions and how the geographic region occupied by a species may be more important for predicting shifts in habitat than is the response of a closely related taxon. Full article

The impact of invasive species is not limited to the loss of biodiversity; it also represents significant threats to agriculture on a global scale. The Japanese beetle Popillia japonica (native to Japan but an invasive agricultural pest in North America) recently occurred in the Po plain (Italy), one of the most cultivated areas in southern Europe. Thus, our aims were to identify (i) the main landscape predictors related to the occurrence of the Japanese beetle and (ii) the areas of potential invasion of the Japanese beetle in the two Northern Italian regions in which this invasive species currently occurs, Piedmont and Lombardy. Specifically, we combined Japanese beetle occurrences available in the citizen science online platform iNaturalist with high-resolution landscape predictors in an ensemble approach and averaged the results of Bayesian generalized linear and additive models developed with the integrated nested Laplace approximation (with stochastic partial differential equation). We found that the occurrence of the Japanese beetle was negatively related to the percentage of broadleaf forests and pastures, while it was positively related to sparse and dense human settlements as well as intensive crops. Moreover, the occurrence of the Japanese beetle increased in relation to the percentage of rice fields until a peak at around 50%. The Japanese beetle was likely to occur in 32.49% of our study area, corresponding to 16,000.02 km², mainly located in the Po plain, low hills, and mountain valleys. We stress that the Japanese beetle is a high-risk invasive species in human-dominated landscapes. Thus, we strongly recommend that local administrations quickly enact pest management in order to reduce further spread. Full article

Despite their past importance as vectors of indigenous malaria, the species composition and spatial distribution of the members of the Anopheles maculipennis complex have been studied to a limited extent in the Netherlands. Therefore, this investigation focuses on the distribution of the members of this complex in the Netherlands, including Anopheles daciae, which has recently been found in countries bordering the Netherlands. In the framework of a national mosquito surveillance between 2010 and 2021, a total of 541 specimens of An. maculipennis s.l. were analyzed from 161 locations covering the entire territory. In addition, 89 specimens were analyzed from overwintering sites during the winter of 2020/2021. All individual mosquitoes were identified to species-level using Sanger sequencing of the ribosomal internal transcribed spacer 2. To characterize the habitat of An. maculipennis s.l. in the Netherlands, land cover use data was extracted in a 1 km buffer area around each finding location. For populations collected in summers between 2010 and 2021, the most frequent species was An. messeae, present in 88.19% of the locations, followed by An. maculipennis s.s. (11.80%), An. atroparvus (3.72%) and An. daciae (3.72%). Anopheles daciae was found in the southern inland areas of the country. Furthermore, An. messeae and An. daciae occurred in sympatry at overwintering sites. This study provides relevant information on the occurrence of species of the Anopheles maculipennis complex in the Netherlands, contributing to a better estimation of the risk of mosquito-borne disease in the country. Full article

The use of multidisciplinary approaches of investigation including biological, biogeographical, historical, morphological, and genetic analysis, can be useful in identifying and preserving biodiversity. The present study focuses on the characterisation and conservation of a mouflon population (Ovis gmelini musimon) from the Mediterranean island of Giglio. Here we provide the first molecular data on the Giglio population and compare it with mouflons from Sardinia, Elba, and Corsica using both nuclear and mitochondrial markers. Our results suggest that the Giglio mouflon harbours genetic variability likely of Sardinian origin but not represented in the current Sardinian mouflon diversity. Although not presenting the typical characteristics of an invasive alien species, the Giglio mouflon is being subjected to eradication through culling or trapping and surgical sterilization. The molecular evidence we report highlights that such actions are causing the irremediable loss of ancestral genetic variants of the genus Ovis. Finally, we highlight how a multidisciplinary approach is necessary to aid the conservation and management of the anthropochorous populations of Mediterranean mammals. Full article

Despite the great technological progress that has aided taxonomical identification, taxonomical issues remain for certain species found in remote and/or understudied geographical areas. The damselfly species Ischnura aurora has been the subject of a long-standing taxonomical debate, focused mainly on the existence of morphological and behavioural differences between Asian and Australo-Pacific forms of this species that could justify their placement into two different species. Here, we carried out a comparative morphological analysis of specimens currently identified as I. rubilio from India and I. aurora from Asia and Oceania, combined with the analysis of mitochondrial and nuclear sequence data, both developed by us and available in public repositories. Our results split the Asian and Australo-Pacific forms of I. aurora into two well-differentiated taxonomic units and, hence, different (albeit closely related) species, and support the specific status of I. rubilio. The results of our genetic analyses suggest the existence of a third (and even fourth) taxonomic unit, stressing the need to revise all available material belonging to the different I. aurora subspecies that have been described. Finally, we have identified several questionable DNA sequences currently available in public repositories, upon which previous conclusions about the phylogenetic position of I. rubilio are based. Our study stresses the importance of being able to link available DNA sequence data with voucher specimens as well as to carry out a careful examination of DNA sequence data prior to their inclusion in taxonomical studies. Full article

Traditional crop varieties are receiving increasing attention in sustainable agriculture, conservation genetics, and plant science because they offer significant and largely unexplored diversity. The DNA profiling of landraces is being applied to numerous crops, yet a detailed knowledge of morphological diversity is often needed to increase the efficiency of both the conservation and exploitation of local germplasm. In this work, morphological, pomological, and fruit-quality traits (16 qualitative and 16 quantitative) were collected from 44 traditional apricot landraces cultivated in Campania, the Italian region with the highest number of traditional varieties. The aim was to assess varietal diversity and to highlight possible trends and phenotypes that may have driven the morphological differentiation. All traits were polymorphic, and each variety had a distinctive phenotype. The qualitative and quantitative traits provided different classifications of the varieties. Nonetheless, the Factorial Analysis of Mixed data indicated that, for both categories of variables, the fruit traits were the most influential for landrace classification. Interestingly, some easily discernible color phenotypes of the fruits mostly contributed to the discrimination of the analyzed apricot germplasm. We conclude that these specific, commercially relevant features of the fruit were important drivers of the differentiation of the cultivated apricot material at regional scale. Full article

The Natural History Collections of Adam Mickiewicz University (AMUNATCOLL) in Poznań contain over 2.2 million specimens. Until recently, access to the collections was limited to specialists and was challenging because of the analogue data files. Therefore, this paper presents a new approach to data sharing called the Scientific, Educational, Public, and Practical Use (SEPP) Model. Since the stakeholder group is broad, the SEPP Model assumes the following key points: full open access to the digitized collections, the structure of metadata in accordance with certain standards, and a versatile tool set for data mining or statistical and spatial analysis. The SEPP Model was implemented in the AMUNATCOLL IT system, which consists of a web portal equipped with a wide set of explorative functionalities tailored to different user groups: scientists, students, officials, and nature enthusiasts. An integral part of the system is a mobile application designed for field surveys, enabling users to conduct studies comparing their own field data and AMUNATCOLL data. The AMUNATCOLL IT database contains digital data on specimens, biological samples, bibliographic sources, and multimedia nature documents. The metadata structure was developed in accordance with ABCD 2.06 and Darwin Core standards. Full article

Predation plays an important organisational role in structuring aquatic communities. Predator diversity can, however, lead to emergent effects in which the outcomes of predator–prey interactions are modified. The importance of predator diversity in regulating predator–prey interactions was investigated during a 9-day mesocosm study conducted in the middle reach of a temporarily open/closed, temperate, southern African estuary. The zooplankton community, comprising almost exclusively (>95% of total counts) calanoid and cyclopoid copepods of the genera Pseudodiaptomus, Paracartia and Oithona, was subject to three different juvenile fish predator treatments at natural densities: 1. predation by Gilchristella aestuaria, (Gilchrist, 1913; SL 15.3 ± 2.4 mm); 2. predation by Myxus capensis (Valenciennes, 1836; SL 12.8 ± 3.7 mm); and 3. a combination of the two predators. The presence of the predators contributed to a significant decline in the total zooplankton abundances, with a concurrent increase in total chlorophyll-a (Chl-a) concentrations, consistent with the expectations of a trophic cascade (ANCOVA; p < 0.05 in all cases). There were no significant differences in the total Chl-a concentration or total zooplankton abundances between the different predator treatments, suggesting that the increase in predator diversity did not contribute to increased prey risk or to the strength of the trophic cascade. Full article

Habitat suitability assessment is critical for wildlife population conservation and management planning. The MaxEnt model is widely used in species habitat suitability modeling. In order to investigate the habitat status of the black-necked crane in the Zoige grassland wetland ecological function area, this study evaluated the habitat suitability of the black-necked crane using the MaxEnt model with 152 occurrence records and 13 environmental variables. Based on the Akaike information criterion corrected for the small sample size, the best optimal parameter combination (feature class LQPHT, regularization multiplier 3.0) was selected. The results show that the Maxent model had good accuracy with an area under the curve (AUC) value of 0.895. Distance to roads, average summer precipitation, distance to lakes, and altitude are the dominant environmental variables affecting the potential distribution of black-necked cranes, with the contribution rates of 31.6%, 29.8%, 14.3%, and 8.2%, respectively. The suitable habitat area of black-necked cranes is mainly distributed in and around the Zoige Wetland National Nature Reserve, accounting for 46.49% of the Zoige Grassland Wetland National Key Ecological Function Zone. The potential distribution area has a tendency to spread to Hongyuan County in the south of the functional zone, and the unsuitable habitat is mainly distributed in the high-altitude area in the southwest of the functional zone. This study recommends focusing on the distribution area of black-necked cranes around Zoige Wetland National Nature Reserve and Hongyuan County to improve conservation strategies and strengthen protection efforts. Full article

Plants know no political borders and some of them are restricted to small geographical territories of different countries in which they are endemic. In this study, we prioritized plants (PPs) of the cross-border area of Greece and the Republic of North Macedonia that are already threatened or nearly so (PPA), those which occur exclusively on either side of borderline and/or nearby countries (PPB), or those which are uncommon and rare in this region (PPC) with the aim to document in-situ the species-specific risks-threats; offer ex-situ conservation for them as a back-up solution for future re-introductions and sustainable exploitation; and raise public awareness and alertness about the importance of local biodiversity. In the framework of the project Conse-pp, 20 botanical expeditions were performed in 75 selected areas to collect samples and suitable propagation material from 130 PPs (147 accession numbers), also recording all types of threats-identified in-situ for each of them. No ex-situ conservation was detected for 40 PPs worldwide while for another 12 PPs only limited attempts have been made to date. The fully documented PPs are currently maintained under ex- situ conservation and acclimatization in the Balkan Botanic Garden of Kroussia (BBGK). In total, 156 propagation trials (sexual or asexual) have been made for these PPs to develop species-specific propagation protocols. Consequently, the production of new plant stocks raised ex-situ was achieved (n = 3254 individuals; first-time ex-situ conservation for 40 taxa), and this has enabled the establishment of three awareness-raising sites with PPs: (i) 1000 plants of 70 PPs in the newly designed Kardia Botanical Park in Thermi (Greece); (ii) 850 plants of 104 PPs in the phytodiversity awareness spot in BBGK and 130 individual PPs in the Garden of Environmental Awareness; and (iii) 42 plants of 14 PP taxa delivered to the botanic garden of Ss. Cyril and Methodius University in Skopje. This project outlines the necessity of the development of common plant conservation strategies for threatened plants in cross-border areas of neighboring countries and presents an integrated approach allowing for sustainable development and future in-situ protection measures and actions in the studied cross-border area. Full article

The revitalisation of soil fauna in post-mining soils is one of the ways in which we can slow down biodiversity loss. To investigate the effect of a meadow soil transplanted directly into the spoil substrate on the colonisation of a spoil heap, we used nematodes as a tool for an assessment of success in soil fauna recolonisation. Three blocks of meadow topsoil (10 × 3 × 0.4 m) were dug out and transported as intact as possible into a bare substrate of spoil heaps near Sokolov (Czech Republic). The soil samples were taken at the beginning of the experiment (1997) and then, after 19 years (2016), were transported into blocks (B) in their surroundings in a 2 m distance (I) and, finally, 30 m from the transported blocks as a control (C), to compare and assess the complexity of soil food web. Nematode total abundances were highest in B plots and lowest in the nearby I plots at the beginning, whereas later, their abundances were highest in I plots and lowest in the control (C) plots. However, due to the high variability, abundances were statistically insignificant. The trophic composition of I plots became similar to the composition in B plots in the late phase; however, the high occurrence of predators in C plots showed a running succession even after 19 years. Our results together with previous works from the same experiment support the findings that the level of soil development has a larger impact on recolonisation by soil fauna than the migration barrier itself. Full article

Silver fir (Abies alba Mill.) is one of the most valuable and productive tree species across European mountains, that accomplish multiple economic, protective and ecologic functions. Alongside spruce (Picea abies (L.) Karst) and beech (Fagus sylvatica L.), silver fir is a characteristic species for the Romanian Carpathians. Although silver fir tree is recommended for the diversification of forests in order to increase the resistance to climate change, it is very sensitive to climatic excesses, especially those that proceed rapidly. Therefore, the aim of this study is to investigate both the environmental conditions and stand characteristics of fir from five mountain ranges of the Romanian Carpathians. The study is based on data recorded over a period of 10 years (1990–2000). As such, a total of 77,251 stands that occupy 211,954 hectares have been investigated in regard to silver fir behaviour. MATLAB scripts were used for analysing consistent data volumes as well as the impact of eight factors on the silver fir productivity (altitude, field aspect, field slope, soil type, participation percentage, road distance, structure and consistency). Our analysis has revealed that higher silver fir productivity is found at altitudes of up to 1200 m, on mid and upper slopes, on NW field aspects, on eutric cambisols and dystric cambisols, with a 10–20% participation in stand composition and in relatively-even aged stands with a full consistency. This study offers valuable insights for forest managers that require comprehensive information in adopting effective strategies to enhance forest resilience under climate change. Full article

Most ecosystems are increasingly being degraded and reduced by human activities at the local and global scales. In contrast, urban environments are expanding as increasing portions of humanity move into cities. Despite the common perception among biologists that urban areas are biological deserts, cities offer habitat for many non-human species, but their ecology and conservation remain poorly studied. In this review, we first provide an update on the current state of knowledge on urban wildlife, then briefly examine the indirect effects of the COVID-19 pandemic on urban wildlife and add four components not previously included in comprehensive reviews. (1) We show that by reducing human activity, COVID-19 has temporarily enhanced urban habitat quality for some species and diminished it for others. (2) Thoughtful horticulture can contribute to urban wildlife by providing complex habitat structures that benefit biodiversity while enhancing human wellbeing. (3) Recent literature on urban invertebrate biodiversity has grown, though is still focused on pollinators. (4) Finally, employing insights from the discipline of communication can enhance the success of urban biodiversity conservation among both biologists and the public. Full article

Molecular markers and mapping are used to analyze an organism’s genes. They allow the selection of target genetic areas based on marker genotype (and not trait phenotype), facilitate the study of genetic variability and diversity, create linkage maps, and follow individuals or lines carrying certain genes. They may be used to select parental genotypes, remove linkage drag in back-crossing, and choose difficult-to-measure characteristics. Due to a lack of genetic variety in crops, the gene pools of wild crop relatives for future agricultural production have been examined. The invention of RFLP (Restriction Fragment Length Polymorphism) for linkage mapping allowed for the creation of other traditional approaches such as RAPD (Random Amplified Polymorphic DNA) and AFLP (Amplified Fragment Length Polymorphism). Accordingly, the need to describe the polymorphic information content (PIC) of the ideal marker has been raised. Marker selection reliability depends on the marker’s relationship to the genomic area of interest. Although informativeness must be estimated for genetic study design, there are no readily available tools. Earlier, PICcalc was developed to calculate heterozygosity (H) and PIC to simplify molecular investigations. These two values were corrected for dominant and co-dominant markers (binary and allelic data) to determine polymorphism quality. Due to the popularity of PICcalc web, we developed a downloadable version called MolMarker with extra functionality to reduce server maintenance. Full article

Cestodes Paranoplocephala kalelai, which parasitizes in the small intestine of Myodes voles and is distributed in northern Fennoscandia, was found in six habitats in the Asian part of Russia and eastern Kazakhstan, which indicates a wider distribution of P. kalelai on the continent. Analysis of mtDNA showed that P. kalelai is characterized by significant molecular variability in Eurasia. This study complements the data on the distribution of P. kalelai and provides the first molecular data from the territory of Russia and Kazakhstan. The sequence variability of two mitochondrial genes cox1 and nad1 of P. kalelai was studied in two species of voles: gray red-backed Myodes rufocanus and northern red-backed vole Myodes rutilus. Five haplotype groups in the cox1 and nad1 gene networks were identified, and the existence of two mtDNA lines in P. kalelai outside northern Fennoscandia was confirmed. The geographical distribution of the identified haplotypes suggests that the foothills of the Altai-Sayan mountains and southern West Siberia may serve as a refugium for P. kalelai during repeated glaciations. Full article

Here, we address the question of if/to what extent human–wildlife conflict (HWC) can be reduced or mitigated by supra-regional or even global approaches, or whether case- and region-specific strategies are necessary. First, we try to shift the perspective from humans towards wildlife and regard modern era (near) extinctions of selected wildlife species as an ultimate expression of HWC. We then reflect on the legitimacy of ecosystem comparisons beyond the borders of biogeographical regions—an important prerequisite for global approaches. In the following, we present two case scenarios that exemplarily illustrate the topic from different perspectives: carnivore–livestock conflicts (classical view, human perspective) and wind turbine-induced mortality of bats (wildlife perspective, rarely regarded as a form of HWC). On this basis, we try to develop a framework that enables a global approach, while adequately considering case- and region-specificity. We think that a globally valid and generally approachable dimension can be defined, as long as there is a natural link: in the present case the established monophyly of the orders Carnivora and Chiroptera, i.e., representatives descending from common ancestors, thus sharing common ecological features. This natural relationship among all representatives of a systematic group (specification of the “wildlife” concept) is key for the development of an overarching strategy that can be adjusted to a specific case. Full article

Wildlife management can influence animal welfare and survival, although both are often not explicitly integrated into decision making. This study explores fundamental concepts and key concerns relating to the welfare and survival of stranded cetaceans. Using the Delphi method, the opinions of an international, interdisciplinary expert panel were gathered, regarding the characterisation of stranded cetacean welfare and survival likelihood, knowledge gaps and key concerns. Experts suggest that stranded cetacean welfare should be characterised based on interrelated aspects of animals’ biological function, behaviour, and mental state and the impacts of human interventions. The characterisation of survival likelihood should reflect aspects of stranded animals’ biological functioning and behaviour as well as a 6-month post-re-floating survival marker. Post-release monitoring was the major knowledge gap for survival. Welfare knowledge gaps related to diagnosing internal injuries, interpreting behavioural and physiological parameters, and euthanasia decision making. Twelve concerns were highlighted for both welfare and survival likelihood, including difficulty breathing and organ compression, skin damage and physical traumas, separation from conspecifics, and suffering and stress due to stranding and human intervention. These findings indicate inextricable links between perceptions of welfare state and the likely survival of stranded cetaceans and demonstrate a need to integrate welfare science alongside conservation biology to achieve effective, ethical management at strandings. Full article

Geographically isolated wetland and surrounding landscape features affect the ecology and life history of amphibian species. We used multistate mark recapture methods and data from over 30,000 captures of adult Ambystoma opacum to explore how survival, breeding, and movement probabilities differed among wetlands surrounded by regenerating 20-year-old clearcuts and mature 100-year-old forest stands. Survival varied among ponds and years but did not differ between regenerating and mature forest habitats. Both sexes at all ponds incurred dramatic mortality during the non-breeding season of a drought year (2001–2002). Females that skipped one or more breeding opportunities had higher breeding probabilities the following year than did successive breeders. Females exiting into regenerating forests had lower breeding probabilities at two of the three ponds. Breeding salamanders tended to make local movements from regenerating to mature forests, particularly when exiting the pond basin. Landscape movements between ponds were generally low, with few individuals moving from mature to regenerating forest habitats. We conclude that clearcuts continue to negatively impact some demographic parameters of salamanders 20 years post-cutting, but other environmental factors may mitigate these effects, and that populations are probably capable of complete recovery, particularly if some mature forest is retained. Full article

Lichens collected worldwide for centuries have resulted in millions of specimens deposited in herbaria that offer the potential to assess species boundaries, phenotypic diversification, ecology, and distribution. The application of molecular approaches to historical collections has been limited due to DNA fragmentation, but high-throughput sequencing offers an opportunity to overcome this barrier. Here, we combined a large dataset of ITS sequences from recently collected material and historical collections, obtained through Sanger, 454, or Illumina Sequencing, to test the performance of ITS barcoding in two genera of lichenized Basidiomycota: Cora and Corella. We attempted to generate new sequence data for 62 fresh specimens (from 2016) and 274 historical collections (collected between 1888 and 1998), for a final dataset of 1325 sequences. We compared various quantitative approaches to delimit species (GMYC, bPTP, ASAP, ABGD) and tested the resolution and accuracy of the ITS fungal barcoding marker by comparison with a six-marker dataset. Finally, we quantitatively compared phylogenetic and phenotypic species delimitation for 87 selected Cora species that have been formally described. Our HTS approach successfully generated ITS sequences for 76% of the historical collections, and our results show that an integrative approach is the gold-standard for understanding diversity in this group. Full article

Different types of water bodies in lowland river floodplains represent vital biodiversity havens and encompass diverse microhabitats, which are essential for structuring different macroinvertebrate communities. Chironomidae larvae (Diptera) are an inseparable part of these communities, with their high richness and abundance. In three water body types within the Danube floodplain Kopački Rit in Croatia, over the course of four sampling campaigns, we recorded 51 chironomid taxa in periphyton on macrophytes, twigs, and glass slides. The most diverse were chironomid communities on macrophytes, whilst month-old periphyton on twigs supported the least taxa. Cricotopus gr. sylvestris, Dicrotendipes lobiger, Dicrotendipes spp., Endochironomus albipennis, Glyptotendipes pallens agg., Polypedilum sordens and Polypedilum spp. were present in all studied microhabitats. The type of substrate is a very important factor influencing Chironomidae diversity and abundance, which was evident in the presence and dominance of Corynoneura gr. scutellata and Monopelopia tenuicalcar in the dense macrophyte canopy epiphyton. Finding pristine floodplains such as Kopački Rit can be very challenging, as such areas are increasingly altered by human activities. Studies of resident species and the extent to which changes in the parent river influence floodplain communities are important for the protection and restoration of the floodplains. Full article

The current knowledge of Sicilian inland water decapod malacostracans is scarce and an updated synopsis on species distribution is lacking. Therefore, we reviewed the checklist and recent distribution of Sicilian inland water decapods based on published and unpublished records and novel observations with the aim of providing an exhaustive repository, also to be used as a sound baseline for future surveys. Overall, five native decapod species occur in the study area, i.e., the atyid shrimp Atyaephyra desmarestii, the palaemonid shrimps Palaemon adspersus, P. antennarius, and P. elegans, and the freshwater crab Potamon fluviatile, and their current local distributions are described. In addition, three alien species were recorded: the common yabby Cherax destructor and the red swamp crayfish Procambarus clarkii, strictly linked to inland waters, and the Atlantic blue crab Callinectes sapidus, a mainly marine species that can also colonise the lower stretches of rivers and coastal brackish waters. The collected data suggest the existence of a partial segregation of native versus non-native species, with the latter currently confined to coastal water bodies and the lower stretches of rivers. Moreover, the exclusively freshwater caridean A. desmarestii and P. antennarius show a parapatric distribution in the study area, which may suggest the existence of mutual exclusion phenomena. The results obtained raise some concerns about the effects of alien species on the native biota, and dedicated monitoring and management strategies should be implemented in order to better understand and mitigate their impact. Full article