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Editor’s Choice Articles

Editor’s Choice articles are based on recommendations by the scientific editors of MDPI journals from around the world. Editors select a small number of articles recently published in the journal that they believe will be particularly interesting to readers, or important in the respective research area. The aim is to provide a snapshot of some of the most exciting work published in the various research areas of the journal.

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27 pages, 5406 KiB  
Article
Rock Surface Colonization by Groundwater Microorganisms in an Aquifer System in Quebec, Canada
by Divya Patel, Vincent Blouin, Jamie Kirkpatrick and Cassandre Sara Lazar
Diversity 2024, 16(7), 374; https://doi.org/10.3390/d16070374 - 28 Jun 2024
Viewed by 5054
Abstract
Aquifers are rich in microbial diversity. However, there is a lack of information about sessile communities in these environments because of the difficulty in sampling fresh in situ rock surfaces. Thus, this study’s objective was to better understand the sessile community in a [...] Read more.
Aquifers are rich in microbial diversity. However, there is a lack of information about sessile communities in these environments because of the difficulty in sampling fresh in situ rock surfaces. Thus, this study’s objective was to better understand the sessile community in a fractured aquifer. Additionally, the impact of the rock mineral composition on microbial community composition during colonization was explored. Using a system of bioreactors, we recreated the environmental conditions of a 1.5 m deep aquifer in Covey Hill (QC, Canada) using groundwater samples collected from the site. We carried out 16S/18S rRNA amplicon sequencing of the water and sessile communities after 24 days of incubation. Our data showed that many microbial taxa overlapped between the sessile and planktonic communities, indicating colonization of the solid surfaces. Quartz and feldspar had a significant impact on bacterial community structure. Sessile communities were dominated by Gaillonella, Alkanindiges, unclassified Acetobacteraceae, Apoikiales, Glissomonadida, and Synurales. We could not detect any Archaea in the sessile community. The sessile communities contained bacterial genera involved in iron cycling and adapted to acidic and low-carbon-concentration environments. Eukaryotic predators dominated the sessile community. Full article
(This article belongs to the Special Issue Diversity in 2024)
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25 pages, 11779 KiB  
Article
Benthic Diatoms on Macrophytes of the Israeli Mediterranean Coast
by Sophia Barinova, Larisa Ryabushko, Daria Balycheva, Anastasiia Blaginina, Elena Chiernyavsky and Armine Shiroyan
Diversity 2024, 16(6), 338; https://doi.org/10.3390/d16060338 - 11 Jun 2024
Cited by 1 | Viewed by 2292
Abstract
Benthic diatoms have been studied in different areas of the Mediterranean Sea, but no data have been available for Israeli coastal waters until the present time. In this work, the composition, ecology, and phytogeography of diatoms of the macrophytes epiphyton are presented for [...] Read more.
Benthic diatoms have been studied in different areas of the Mediterranean Sea, but no data have been available for Israeli coastal waters until the present time. In this work, the composition, ecology, and phytogeography of diatoms of the macrophytes epiphyton are presented for the first time. Altogether, 85 diatom taxa were found among the epiphyton of 25 species of green, brown, and red macroalgae from the Israeli coast between March and May of 2021. These diatoms represent three classes, 17 orders, 26 families, and 41 genera. The taxonomic composition, ecology, and phytogeography of species are discussed. The distribution of diatoms are compared to that of other macrophytes and anthropogenic loads across the shoreline. The dominant species are given. Ecological characteristics and abundance in communities of revealed species are represented and statistically analyzed. The index of saprobity S varies between 1.69–2.71. Sites that stressed aquatic communities are indicated. The influence of the anthropogenic loads on the coastal territories is defined as a major factor that stimulated diatom species richness. Sites with anthropogenic stress for aquatic communities are indicated. Based on the composition of bioindicators, it is concluded that the section of the Israeli coast studied is oligo-mesotrophic compared to the eutrophic Gulf of Tartus. Full article
(This article belongs to the Special Issue Biodiversity and Ecology in the Mediterranean Sea)
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41 pages, 1934 KiB  
Article
Changes in Population Densities and Species Richness of Pollinators in the Carpathian Basin during the Last 50 Years (Hymenoptera, Diptera, Lepidoptera)
by Attila Haris, Zsolt Józan, Ladislav Roller, Peter Šima and Sándor Tóth
Diversity 2024, 16(6), 328; https://doi.org/10.3390/d16060328 - 3 Jun 2024
Viewed by 3548
Abstract
Temporal changes in population densities and species richness of three main pollinator groups—moths and butterflies (Lepidoptera); bees, wasps and sawflies (Hymenoptera); and hoverflies, horseflies, tachinids and bee flies (Diptera)—were investigated in the Carpathian Basin. Maintaining pollinator diversity is a crucial factor for preserving [...] Read more.
Temporal changes in population densities and species richness of three main pollinator groups—moths and butterflies (Lepidoptera); bees, wasps and sawflies (Hymenoptera); and hoverflies, horseflies, tachinids and bee flies (Diptera)—were investigated in the Carpathian Basin. Maintaining pollinator diversity is a crucial factor for preserving our biodiversity and ecosystems; furthermore, several pollinator species have a strong economic role in maintaining crop and fruit cultures. Our conclusions are based on our three and four decades of faunistic surveys in various regions of the Carpathian Basin. Analyzing and comparing our data with the historical data of the last 50 years, we concluded that densities of some pollinators declined during the past decade and a half (Symphyta, hoverflies), although populations of several species of Mediterranean origin grew (Aculeata) and new species even migrated from the warmer regions. In numerous cases, this decrease was dramatic: more than 90% decline of certain butterfly species were detected. On the other hand, the composition of pollinator fauna significantly changed due to the disappearance of some mountainous or mesophile species. The main reason for the decrease in pollinator communities is due partly to climatic change and partly to anthropogenic factors. Different groups of pollinators react differently: some groups like Syrphidae, Tachinidae, most of the butterfly families and bumblebees suffered a strong decline in the last two decades; other warm-loving groups like most of Aculeata and horseflies and bee flies showed a significant increase in population densities. Our conclusion: in our region, the pollinator crisis is present but moderate; however, there is a clear sign of the gradual transition of our pollinator fauna towards the Mediterranean type. Full article
(This article belongs to the Special Issue Emerging Effects of Pollinator Loss on Biodiversity)
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39 pages, 15772 KiB  
Review
The Elasmobranch Fossil Record of the Indo-Australian Archipelago since the Miocene: A Literature Review and New Discoveries from Northern Borneo
by László Kocsis
Diversity 2024, 16(6), 323; https://doi.org/10.3390/d16060323 - 29 May 2024
Cited by 1 | Viewed by 1364
Abstract
The Indo-Australian Archipelago (IAA) today exhibits the highest marine biodiversity, which has been evolving since the early Miocene. The existence of this high palaeobiodiversity is attested to by the presence of many fossil invertebrates; however, the region’s fossil fish record is sparse and [...] Read more.
The Indo-Australian Archipelago (IAA) today exhibits the highest marine biodiversity, which has been evolving since the early Miocene. The existence of this high palaeobiodiversity is attested to by the presence of many fossil invertebrates; however, the region’s fossil fish record is sparse and understudied, which is also the case for cartilaginous fishes. Elasmobranch fossils are dominantly represented by shark and ray teeth in the geological record and can give a quick overview of the composition of the fauna. The first IAA elasmo fossils, shark teeth were described from Java (Indonesia) at the end of the 19th century, and until today, most of the publications are known from this island. In the early and middle of the 20th century, remarkable fossils were also reported from the islands of Madura (NE Java) and Sulawesi, some with detailed taxonomical descriptions. In addition, only sporadic reports on fossil occurrences exist elsewhere from the IAA, but these lack any detailed taxonomic accounts. In 2019 our research group reported a late Miocene elasmobranch fauna from Brunei (Borneo), which is now the most diverse known shallow water fossil assemblage from the entire IAA. This fauna was described from a single fossiliferous outcrop, called Ambug Hill. However, several new localities have been discovered and studied over the years, as a result the number of fossils increased, and their age range extended. Here we provide an overview of these new sites and their elasmobranch fossils, and describe remains from ten taxa among, of which eight are new to the IAA fossil record (Chiloscyllium sp., cf. Hemitriakis sp., Paragaleus sp., Carcharhinus borneensis, C. limbatus, Lamiopsis sp., Scoliodon sp., Rhinobatos sp.). The overall north Bornean elasmo assemblage is then compared with other IAA occurrences. An extended fauna list is given based on literature review and preliminary investigation of the Naturalis Biodiversity Centre collection in Leiden (The Netherlands) where most of the fossil fishes of the early explorations are stored. These assemblages are also briefly summarized, and attention is drawn to some of the unique and thus far unreported taxa (e.g., Dalatias licha). Full article
(This article belongs to the Special Issue Recent Advances in Ecology, Evolution and Biodiversity of the Chondrichthyan Fauna)
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25 pages, 2742 KiB  
Article
Improving Aquatic Biodiversity Estimates in Africa: Rotifers of Angola and Ghana
by Radoslav Smolak, Patrick D. Brown, Robert N. Walsmith, Judith V. Ríos-Arana, Peter Sanful, Lukáš Kalous and Elizabeth J. Walsh
Diversity 2024, 16(5), 269; https://doi.org/10.3390/d16050269 - 30 Apr 2024
Viewed by 2693
Abstract
Afrotropical inland waters are highly diverse ecosystems; however, they remain poorly studied, especially for rotifers. Here, we contributed to the knowledge of the rotifer species richness in the largely understudied African countries of Angola and Ghana. We assessed the roles of habitat type [...] Read more.
Afrotropical inland waters are highly diverse ecosystems; however, they remain poorly studied, especially for rotifers. Here, we contributed to the knowledge of the rotifer species richness in the largely understudied African countries of Angola and Ghana. We assessed the roles of habitat type and a suite of abiotic environmental factors in determining rotifer species richness of Ghana. A total of 37 sites (Ghana 32, Angola 5) in 19 water bodies from a variety of aquatic habitat types were sampled. In Ghana, we identified 118 taxa (105 species or subspecies level, 13 identified to genus). We identified 15 taxa (13 species) in the Angola samples. For Ghana, 100 of 118 (~85%) taxa were new records for the country, of which 13 species (~11%) were also new records for Africa. Nearly all the species (~93%) were new records for Angola. Species richness was positively correlated with conductivity and reservoir habitat type and negatively with pH. Redundancy analysis (RDA), conducted at the species level for the Ghana dataset, indicated suites of species associated with latitude, longitude, temperature, TDS, or pH. We also evaluated the effect of climate on species distribution in 27 African countries by conducting a review of all reports from Africa to determine factors associated with species richness. A Spearman’s correlation confirmed a significant positive correlation between the number of rotifer species and the number of climatic regions (R = 0.53, p < 0.001) for certain countries, based on species distributions in relation to Köppen–Geiger climate regions. This fact validates the environmental heterogeneity hypothesis for African rotifers. Lastly, we predicted that rotifer species richness in Ghana, as a country with a tropical climate, could approach ~190 taxa, while in climatically heterogeneous Angola we predict ~200 taxa. This study contributes to our knowledge of rotifer biogeography and species richness patterns in Africa. Full article
(This article belongs to the Special Issue Biodiversity of Rotifers-2nd Edition)
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17 pages, 3001 KiB  
Article
Exploring the Influence of Soil Salinity on Microbiota Dynamics in Vitis vinifera cv. “Glera”: Insights into the Rhizosphere, Carposphere, and Yield Outcomes
by Andrea Colautti, Giovanni Mian, Diego Tomasi, Luke Bell and Patrick Marcuzzo
Diversity 2024, 16(4), 247; https://doi.org/10.3390/d16040247 - 20 Apr 2024
Cited by 1 | Viewed by 1820
Abstract
In a world grappling with the severe effects induced by climate change, one of the most significant concerns affecting agriculture is the gradual decline in water quality for irrigation associated with reduced rainfalls and the consequent increase in soil salinity. This issue is [...] Read more.
In a world grappling with the severe effects induced by climate change, one of the most significant concerns affecting agriculture is the gradual decline in water quality for irrigation associated with reduced rainfalls and the consequent increase in soil salinity. This issue is particularly crucial for grapevine cultivation (Vitis vinifera L.) and the associated winemaking industry. The aroma of the resulting wines and the yield parameters can be influenced both directly by water quality and indirectly due to the effects exerted by salinity on the microbiota, which directly impacts plant health. To gain insights into this topic, our study aimed to analyse the changes induced in the microbiota of both the rhizosphere and the carposphere due to salt stress using a metabarcoding approach, focusing on Vitis vinifera cv. Glera. The control plants were irrigated with rainwater, while the treated plants were irrigated with water containing salt (NaCl). Our findings revealed significant differences in the microbiota (both fungi and bacteria) of the rhizosphere and carposphere between the two treatments. For instance, the Shannon diversity index (i.e., alpha diversity) was lower in the treated plants compared to the control not-treated ones, whilst the beta diversity did not show any differences. Several microbial phyla exhibited better resilience to this abiotic stress (e.g., Ascomycota, Saccharomycetes, Acidobacteria, Proteobacteria, Bacteroidetes), shedding light on their impact on crucial bacterial and fungal groups essential for the subsequent winemaking stages. Additionally, the salt stress negatively affected the yield parameters. This study contributes valuable insights to the viticultural community, providing a deeper understanding of the complex interplay between soil characteristics, microbial communities, and their influence on productivity. Full article
(This article belongs to the Section Microbial Diversity and Culture Collections)
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20 pages, 7639 KiB  
Article
Ecological Impacts of Introduced European Rabbits (Oryctolagus cuniculus) on Island Ecosystems in the Mediterranean
by Angelina Kossoff, Sheila Schueller, Hannah Nossan, Ian Slack, Pavlos Avramidis and Johannes Foufopoulos
Diversity 2024, 16(4), 244; https://doi.org/10.3390/d16040244 - 19 Apr 2024
Cited by 1 | Viewed by 1916
Abstract
The Cyclades Islands (Aegean Sea, Greece) are part of the Mediterranean Basin biodiversity hotspot and harbor a plethora of endemic species. Plant communities on the smaller islands in this region have largely evolved in the absence of herbivory and frequently lack antiherbivore defenses. [...] Read more.
The Cyclades Islands (Aegean Sea, Greece) are part of the Mediterranean Basin biodiversity hotspot and harbor a plethora of endemic species. Plant communities on the smaller islands in this region have largely evolved in the absence of herbivory and frequently lack antiherbivore defenses. This study evaluates the short- and long-term effects of the European rabbit (Oryctolagus cuniculus), an herbivore that has been released on numerous islands in the region, by comparing islands that 1. have historically been rabbit-free (ungrazed); 2. are currently grazed by rabbits, and 3. have previously been grazed, but are now rabbit-free. Ecological impacts of rabbits on the Aegean Islands were investigated by assessing the abundance, composition, and diversity of plant and arthropod communities as well as soil characteristics. Our results indicate that ungrazed islands have more arthropod species, more specialized or endemic plant species, and less exposed soil than currently grazed islands. While ungrazed islands did not necessarily possess higher total plant species richness, they did harbor significantly more small-island endemic taxa relative to presently grazed islands. This study indicates that native plant communities on Mediterranean islets are not adapted to the presence of this introduced species and that the practice of intentionally releasing rabbits on islands has significant and lasting negative ecological impacts, especially on small islands. While a complete recovery of post-rabbit was not evident over the time span of our research, both arthropod and plant data indicate that partial recovery is possible once rabbits have been removed. Full article
(This article belongs to the Special Issue Recent Advances in the Impacts of Biological Invasions on European Biodiversity)
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17 pages, 2210 KiB  
Article
Molecular and Morphological Phylogenies of Spirorbinae (Serpulidae, Polychaeta, Annelida) and the Evolution of Brooding Modes
by Greg W. Rouse, Tara A. Macdonald and Elena K. Kupriyanova
Diversity 2024, 16(4), 237; https://doi.org/10.3390/d16040237 - 17 Apr 2024
Viewed by 1701
Abstract
Spirorbinae, a ubiquitous group of marine calcareous tubeworms with a small body size as adults, have a fascinating diversity of brooding modes that form the basis for their taxonomic division into six tribes (traditionally subfamilies): in-tube incubation, with varying degrees of attachment to [...] Read more.
Spirorbinae, a ubiquitous group of marine calcareous tubeworms with a small body size as adults, have a fascinating diversity of brooding modes that form the basis for their taxonomic division into six tribes (traditionally subfamilies): in-tube incubation, with varying degrees of attachment to adult structures (four tribes), and external incubation in a modified radiole (opercular brood chambers; two tribes). We investigated the evolutionary transitions among these brooding modes. Phylogenetic reconstruction with molecular (28s and 18s rDNA) and morphological data (83 characters) among 36 taxa (32 ingroup spirorbins; 4 filogranin outgroups) of the combined data set, using maximum parsimony, maximum likelihood, and Bayesian analyses, inferred Spirorbinae to be monophyletic, with strong support for the monophyly for five tribes (Circeini, Januini, Romanchellini, Paralaeospirini and Spirorbini), but non-monophyly for Pileolariini. However, deeper relationships among some tribes remain unresolved. Neomicrorbis was found to be the sistergroup to all other Spirorbinae. Alternative coding strategies for assessing the ancestral state reconstruction for the reproductive mode allowed for a range of conclusions as to the evolution of tube and opercular brooding in Spirorbinae. Two of the transformations suggest that opercular brooding may be ancestral for Spirorbinae, and the tube-incubating tribes may have been derived independently from opercular-brooding ancestors. Full article
(This article belongs to the Special Issue Diversity in 2023)
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25 pages, 11154 KiB  
Article
The Diversity of Subterranean Terrestrial Arthropods in Resava Cave (Eastern Serbia)
by Nikola Vesović, Christo Deltshev, Plamen Mitov, Dragan Antić, Dalibor Z. Stojanović, Dejan V. Stojanović, Katarina Stojanović, Milenka Božanić, Aleksandra Ignjatović-Ćupina and Srećko Ćurčić
Diversity 2024, 16(4), 234; https://doi.org/10.3390/d16040234 - 16 Apr 2024
Viewed by 3822
Abstract
The Balkan region is rich in limestone deposits, which have created one of the largest hotspots of subterranean biodiversity. This paper gives an overview of the diversity of subterranean terrestrial arthropods in Resava Cave in eastern Serbia. This cave is protected and has [...] Read more.
The Balkan region is rich in limestone deposits, which have created one of the largest hotspots of subterranean biodiversity. This paper gives an overview of the diversity of subterranean terrestrial arthropods in Resava Cave in eastern Serbia. This cave is protected and has the status of a natural monument. At the same time, it is one of the most visited caves in Serbia and its surroundings. Our study comprises the results of three years of biospeleological investigations of the famous Serbian cave in combination with data from the few available literature sources on the arthropod fauna of the cave. The arthropod samples were collected both manually and with pitfall traps. A total of 107 arthropod species from the four major subphyla were registered in the cave: 66 species of Hexapoda, 27 species of Chelicerata, 11 species of Myriapoda and three species of Crustacea. For four troglobitic, 16 troglophilic and 87 trogloxenic species recorded in the cave, descriptions of their microhabitats and information on their distribution in the cave are given. Considering the medium size of Resava Cave and the lack of permanent water flow in the two main levels on the one hand, and the large number of arthropod species recorded on the other, the cave is relatively rich in hypogean terrestrial arthropod fauna compared to other caves in Serbia that have been biospeleologically studied so far. Full article
(This article belongs to the Special Issue Recent Advances in the Diversity and Taxonomy of Subterranean Arthropods)
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38 pages, 4089 KiB  
Review
The Fossil Record and Diversity of Pycnodontiform Fishes in Non-Marine Environments
by John J. Cawley and Jürgen Kriwet
Diversity 2024, 16(4), 225; https://doi.org/10.3390/d16040225 - 9 Apr 2024
Viewed by 4035
Abstract
Pycnodont fishes were a successful clade of neopterygian fishes that are predominantly found in shallow marine deposits. However, throughout their long 180 million year reign (Late Triassic–end Eocene), they made multiple incursions into both brackish and freshwater environments. This fossil record mostly consists [...] Read more.
Pycnodont fishes were a successful clade of neopterygian fishes that are predominantly found in shallow marine deposits. However, throughout their long 180 million year reign (Late Triassic–end Eocene), they made multiple incursions into both brackish and freshwater environments. This fossil record mostly consists of fragmentary dental material, but articulated specimens are known from Early Cretaceous lacustrine localities in Spain. This review article aims to document all non-marine occurrences of Pycnodontiformes throughout most of the Mesozoic and early Paleogene. This review highlights two interesting trends in the history of non-marine habitat colonization by pycnodonts: (1) a huge spike in non-marine occurrences during the Cretaceous; and (2) that most occurrences in non-marine localities occurred at the latest Cretaceous period, the Maastrichtian. The high number of colonization events within the Cretaceous lines up with extreme climatic events, such as high temperatures resulting in high sea levels which regularly flooded continental masses, allowing pycnodonts easier access to non-marine habitats. The increased presence of pycnodonts in brackish and freshwater habitats during the Maastrichtian might have played a role in their survival through the K/Pg extinction event. Freshwater habitats are not as vulnerable as marine ecosystems to environmental disturbance as the base of their food chain relies on detritus. Pycnodonts might have used such environments as a refuge and began to occupy marine waters after the K/Pg extinction event. Full article
(This article belongs to the Special Issue Diversity, Biogeography and Evolution of Actinopterygians)
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16 pages, 1913 KiB  
Article
Mycorrhizal Fungi of Phalaenopsis japonica (Orchidaceae) and Their Role in Seed Germination and Seedling Development
by R. M. S. Ruwan Chamara, Kento Rammitsu, Mutsumi Minobe, Akihiko Kinoshita, Nobuhiko Kotaka, Tomohisa Yukawa and Yuki Ogura-Tsujita
Diversity 2024, 16(4), 218; https://doi.org/10.3390/d16040218 - 3 Apr 2024
Cited by 1 | Viewed by 1760
Abstract
Epiphytic orchids comprise 68% of vascular epiphytes globally; nevertheless, many are endangered. One such epiphytic orchid is Phalaenopsis japonica, which is widely used in the floricultural industry. This study aimed to identify the mycorrhizal fungi of adult P. japonica and their [...] Read more.
Epiphytic orchids comprise 68% of vascular epiphytes globally; nevertheless, many are endangered. One such epiphytic orchid is Phalaenopsis japonica, which is widely used in the floricultural industry. This study aimed to identify the mycorrhizal fungi of adult P. japonica and their roles in seed germination and seedling development. Root samples were collected from 32 adults across 4 sites in southern Japan, and mycorrhizal fungi were identified using Sanger and high-throughput sequencing (HTS). The results show phylogenetically diverse mycobionts, mainly Ceratobasidiaceae (CE) and Tulasnellaceae (TU), with dominant OTUs designated CE6 and CE22. Sanger sequencing found 9 OTUs, 4 CE, and 5 TU; HTS detected 22 OTUs, 4 CE, 16 TU, and 2 Serendipitaceae. Seeds inoculated with CE6 improved germination and protocorm development compared with other strains. In addition, asymbiotic seedlings inoculated with CE6, CE22, and TU18 displayed varying effects in growth, with CE6 being the most notable. While TU18 did not promote seed germination, it effectively promoted leaf development in seedlings. Overall, Ceratobasidiaceae was predominantly associated with seed germination, seedling growth, and the adult stages, with CE6 and CE22 becoming the primary partners throughout the life history of P. japonica. Our findings illuminate mycorrhizal symbiosis in epiphytic habitats, offering conservation and commercial production insights. Full article
(This article belongs to the Section Biodiversity Conservation)
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10 pages, 254 KiB  
Article
Effectively Incorporating Small Reserves into National Systems of Protected and Conserved Areas
by Nigel Dudley, Hannah L. Timmins, Sue Stolton and James E. M. Watson
Diversity 2024, 16(4), 216; https://doi.org/10.3390/d16040216 - 31 Mar 2024
Cited by 3 | Viewed by 3101
Abstract
Received wisdom has argued that large protected areas are superior to small reserves, based on island biogeography theory, economies of scale, and the need to sustain viable populations of top predators and other large ranging or dispersive species. But this position overlooks evidence [...] Read more.
Received wisdom has argued that large protected areas are superior to small reserves, based on island biogeography theory, economies of scale, and the need to sustain viable populations of top predators and other large ranging or dispersive species. But this position overlooks evidence that, for many species, strategically placed smaller reserves are extremely important, especially in areas highly altered by humans. Many countries are reluctant or unable to designate additional large protected areas. We provide evidence that carefully designed support networks of smaller protected areas can be an important complement to activities to reach the Global Biodiversity Framework’s target of 30% of the planet in protected and conserved areas by 2030. We identify seven benefits from small reserves, when correctly located and well-managed: (1) conserving critical habitat of range-limited or relic species; (2) conserving remaining areas of sensitive or threatened habitat in altered ecosystems; (3) conserving habitat for sensitive, time-limited lifecycle stages, such as raptor nesting sites and fish spawning grounds; (4) maintaining and enabling connectivity by providing stepping stones of suitable habitat through inhospitable ecosystems; (5) providing increased protection for critical habitat within Category V protected landscapes and seascapes to boost their overall conservation potential; (6) taking advantage of conservation opportunities at cultural sites, sacred natural sites, and other faith-based sites in transformed landscapes; (7) integrating different management approaches and governance types in a range of connected small reserves to multiply conservation impacts. We propose a typology based on these benefits that can guide steps for policy makers to help plan and monitor small reserves in area-based conservation efforts. Using these principles, the role of small reserves in area-based conservation efforts can be further enhanced. Full article
(This article belongs to the Special Issue Methods to Strengthen Protected Area Conservation and Management on the National Level)
15 pages, 3909 KiB  
Article
Trechus (Coleoptera: Carabidae) of Appalachia: A Phylogenetic Insight into the History of High Elevation Leaf Litter Communities
by Patricia L. S. Wooden and Michael S. Caterino
Diversity 2024, 16(4), 212; https://doi.org/10.3390/d16040212 - 30 Mar 2024
Cited by 1 | Viewed by 1670
Abstract
Elevation gradients provide a wealth of habitats for a wide variety of organisms. The southern Appalachian Mountains in eastern United States are known for their high biodiversity and rates of endemism in arthropods, including in high-elevation leaf-litter taxa that are often found nowhere [...] Read more.
Elevation gradients provide a wealth of habitats for a wide variety of organisms. The southern Appalachian Mountains in eastern United States are known for their high biodiversity and rates of endemism in arthropods, including in high-elevation leaf-litter taxa that are often found nowhere else on earth. Trechus Clairville (Coleoptera: Carabidae) is a genus of litter inhabitants with a near-global distribution and over 50 Appalachian species. These span two subgenera, Trechus s. str. and Microtrechus Jeannel, largely restricted to north and south of the Asheville basin, respectively. Understanding the diversification of these 3–5 mm flightless beetles through geological time can provide insights into how the litter-arthropod community has responded to historical environments, and how they may react to current and future climate change. We identified beetles morphologically and sequenced six genes to reconstruct a phylogeny of the Appalachian Trechus. We confirmed the Asheville Basin as a biogeographical barrier with a split between the north and south occurring towards the end of the Pliocene. Finer scale biogeography, including mountain-range occupancy, was not a reliable indication of relatedness, with group ranges overlapping and many instances of species-, species group-, and subgeneric sympatry. This may be because of the recent divergence between modern species and species groups. Extensive taxonomic revision of the group is required for Trechus to be useful as a bioindicator, but their high population density and speciose nature make them worth additional time and resources. Full article
(This article belongs to the Section Biodiversity Conservation)
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69 pages, 81603 KiB  
Review
The Axes of Divergence for the Evolutionary Radiation of Notothenioid Fishes in Antarctica
by Joseph T. Eastman
Diversity 2024, 16(4), 214; https://doi.org/10.3390/d16040214 - 30 Mar 2024
Cited by 4 | Viewed by 2138
Abstract
Notothenioid fishes, a perciform group, radiated in the cold shelf waters around the Antarctic continent and the 110 species dominate fish diversity, abundance, and biomass at levels of ≈77%, 92%, and 91%, respectively. This occurred in a locality with frequent glaciomarine cycles that [...] Read more.
Notothenioid fishes, a perciform group, radiated in the cold shelf waters around the Antarctic continent and the 110 species dominate fish diversity, abundance, and biomass at levels of ≈77%, 92%, and 91%, respectively. This occurred in a locality with frequent glaciomarine cycles that fragmented and obliterated habitats, disrupted ecosystems, and made parts of the high latitude shelves periodically uninhabitable. The notothenioid radiation encompasses three stages and 10 axes: for the habitat stage, divergence in (1) depth and (2) biotope, meaning subdivisions within the pelagic and benthic realms; for the morphology stage, divergence in (3) body size, (4) body density based on proportions of skeletal and adipose tissues, (5) body shape, (6) trophic morphology, specifically head morphology related to feeding (jaws, teeth, head size, and pharyngeal gape), and (7) neuromorphology (brain and sensory systems); and for the communication stage, divergence in (8) fecundity and egg size, (9) sexual dichromatism and dimorphism in body and fins, and (10) parental care behavior associated with nesting. There was an antecedent Eocene fossil fauna that did not include notothenioids and that has minimal taxonomic representation in the modern fauna. Liparids (snailfishes) and zoarcids (eelpouts) also diversified in Antarctic waters but with minimal divergence. Hypotheses are offered as to why these radiations played out the way they did and why notothenioids are dominant. Full article
(This article belongs to the Special Issue Diversity in 2024)
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13 pages, 3111 KiB  
Article
Joint Identification and Application of Microsatellite Markers in Genetic Diversity Study of Closely Related Species Teucrium montanum, T. capitatum and Their Natural Hybrid
by Filip Varga, Zlatko Liber, Ante Turudić, Jernej Jakše, Lea Juzbašić, Nina Jeran, Martina Grdiša, Miloš Zbiljić and Zlatko Šatović
Diversity 2024, 16(4), 206; https://doi.org/10.3390/d16040206 - 28 Mar 2024
Cited by 1 | Viewed by 1537
Abstract
Teucrium montanum L. and T. capitatum L. are two plant species with overlapping distribution in the Balkan Peninsula, especially in Croatia, where several occurrences of their putative hybrid species T. × rohlenae have been recorded. Next-generation sequencing of both species and de novo [...] Read more.
Teucrium montanum L. and T. capitatum L. are two plant species with overlapping distribution in the Balkan Peninsula, especially in Croatia, where several occurrences of their putative hybrid species T. × rohlenae have been recorded. Next-generation sequencing of both species and de novo assembly was carried out resulting in 120 contigs for T. montanum and 1685 contigs for T. capitatum assembled. The Dig-up primers pipeline was used for SSR mining of both assemblies, applying different criteria that resulted in 112 SSR candidates for testing. A subset of 41 SSRs was selected and after two rounds of testing, twelve SSRs were developed and characterized. A total of 232 alleles were detected with 5 to 29 alleles per locus, based on the test sample. The genetic diversity analysis of three Teucrium taxa from a single location revealed a higher level of diversity in T. montanum than in T. capitatum with intermediate values for the hybrid species. The NeighborNet diagram and genetic structure analysis grouped the taxa into two separate clusters, the first of which consisted exclusively of T. montanum, while the other was composed of intermixed T. capitatum and T. × rohlenae individuals. The availability of SSR markers for two Teucrium taxa will allow in-depth analysis of genetic diversity and structure, as well as molecular identification of their putative hybrids in the future. Full article
(This article belongs to the Special Issue Population Genetics of Animals and Plants)
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20 pages, 8645 KiB  
Article
Golden Eagle Populations, Movements, and Landscape Barriers: Insights from Scotland
by Alan H. Fielding, David Anderson, Catherine Barlow, Stuart Benn, Robin Reid, Ruth Tingay, Ewan D. Weston and D. Philip Whitfield
Diversity 2024, 16(4), 195; https://doi.org/10.3390/d16040195 - 25 Mar 2024
Cited by 1 | Viewed by 2460
Abstract
GPS satellite tracking allows novel investigations of how golden eagles Aquila chrysaetos use the landscape at several scales and at different life history stages, including research on geographical barriers which may prevent or limit range expansion or create population/sub-population isolation. If there are [...] Read more.
GPS satellite tracking allows novel investigations of how golden eagles Aquila chrysaetos use the landscape at several scales and at different life history stages, including research on geographical barriers which may prevent or limit range expansion or create population/sub-population isolation. If there are significant barriers to golden eagle movements, there could be demographic and genetic consequences. Genetic studies have led investigations on the identification of sub-species, populations, and sub-populations but should be conjoined with demographic studies and dispersal movements to understand fully such designations and their geographic delimitation. Scottish eagles are genetically differentiated from continental European birds, with thousands of years of separation creating a distinct population, though without sub-species assignation. They present unique research opportunities to examine barriers to movements illustrated by satellite tracking under Scotland’s highly variable geography. We primarily examined two features, using more than seven million dispersal records from satellite tags fitted to 152 nestlings. The first was the presence of unsuitable terrestrial habitat. We found few movements across a region of largely unsuitable lowland habitat between upland regions substantially generated by geological features over 70 km apart (Highland Boundary Fault and Southern Uplands Fault). This was expected from the Golden Eagle Topography model, and presumed isolation was the premise for an ongoing reinforcement project in the south of Scotland, translocating eagles from the north (South Scotland Golden Eagle Project: SSGEP). Second was that larger expanses of water can be a barrier. We found that, for a northwestern archipelago (Outer Hebrides), isolated by ≥24 km of sea (and with prior assignation of genetical and historical separation), there were no tagged bird movements with the Inner Hebrides and/or the Highlands mainland (the main sub-population), confirming their characterisation as a second sub-population. Results on the willingness of eagles to cross open sea or sea lochs (fjords) elsewhere in Scotland were consistent on distance. While apparently weaker than the Outer Hebrides in terms of separation, the designation of a third sub-population in the south of Scotland seems appropriate. Our results validate the SSGEP, as we also observed no movement of birds across closer sea crossings from abundant Highland sources to the Southern Uplands. Based on telemetric results, we also identified where any re-colonisation of England, due to the SSGEP, is most likely to occur. We emphasise, nevertheless, that our study’s records during dispersal will be greater than the natal dispersal distances (NDDs), when birds settle to breed after dispersal, and NDDs are the better shorter arbiter for connectivity. Full article
(This article belongs to the Special Issue Ecology and Conservation of the White-Tailed Eagle and Golden Eagle)
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11 pages, 669 KiB  
Article
Population Reinforcement of the Endangered Freshwater Pearl Mussel (Margaritifera margaritifera): Lessons Learned
by Louise Lavictoire and Christopher West
Diversity 2024, 16(3), 187; https://doi.org/10.3390/d16030187 - 20 Mar 2024
Cited by 1 | Viewed by 2696
Abstract
Freshwater mussel populations are in sharp decline and are considered to be one of the most imperilled groups globally. Consequently, the number of captive breeding programmes has increased rapidly in recent years, coupled with subsequent reintroductions/population reinforcements to reverse these declines. The outcomes [...] Read more.
Freshwater mussel populations are in sharp decline and are considered to be one of the most imperilled groups globally. Consequently, the number of captive breeding programmes has increased rapidly in recent years, coupled with subsequent reintroductions/population reinforcements to reverse these declines. The outcomes of mussel conservation translocations are seldom reported in the primary literature, hindering opportunities for learning and for population recovery at pace. Here, we describe the methods employed to carry out a successful conservation translocation of the freshwater pearl mussel (Margaritifera margaritifera) in a declining population in northwest England. Following a small-scale pilot release in 2017, four release sites were identified for a population reinforcement of over 1300 tagged mussels in 2021. Monitoring during 2022 showed high levels of retention of juveniles at three out of the four release sites, despite the occurrence of a significant flood event during October 2021. Subsequent releases of 1100 juveniles were carried out across the three successful sites in 2023. Ongoing and regular monitoring is essential in order to provide data on the longer-term fate of propagated juveniles in the wild. This will allow for adaptive management of release activities in this river. These data will be useful to design conservation translocation strategies for other imperilled pearl mussel populations in the UK and throughout Europe. Full article
(This article belongs to the Special Issue Population Ecology and Protection of Freshwater Mussels)
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17 pages, 1181 KiB  
Systematic Review
A Systematic Review of Population Monitoring Studies of Sea Turtles and Its Application to Conservation
by Haley Hendrix and Sílvia Pérez-Espona
Diversity 2024, 16(3), 177; https://doi.org/10.3390/d16030177 - 12 Mar 2024
Viewed by 4805
Abstract
Sea turtles are keystone species in marine environments due to their essential role as seagrass grazers and population regulation of jellyfish and sponges in coral reefs. However, due to their predominant presence in coastal areas, sea turtle populations face significant threats due to [...] Read more.
Sea turtles are keystone species in marine environments due to their essential role as seagrass grazers and population regulation of jellyfish and sponges in coral reefs. However, due to their predominant presence in coastal areas, sea turtle populations face significant threats due to the impact of human activities. In this systematic review, 655 peer-reviewed publications were analyzed to assess the extent of population monitoring for all seven sea turtle species. The analyses revealed that, although population monitoring studies have increased for sea turtles in the past four decades, these have been biased towards certain species and oceanic regions. Furthermore, sea turtle population monitoring has been undertaken primarily using field-based methods, with satellite tracking and nest surveys being the most commonly used methods; however, the implementation of genetic methods for population monitoring has increased since the 2000s. Direct conservation recommendations from this study include the urgent need to establish population monitoring studies in the Critically Endangered Kemp’s ridley and hawksbill and the Data Deficient flatback. Furthermore, population monitoring programs should be implemented in Southeast Asia and Northern and Central Africa, where knowledge on sea turtle populations is still limited. Finally, due to the long-distance movements of sea turtles, we also advocate for international cooperation and collaboration of local communities to protect these ecologically important and iconic marine species. Full article
(This article belongs to the Special Issue Genetic Diversity, Ecology and Conservation of Endangered Species)
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16 pages, 1614 KiB  
Review
A Comprehensive Review of Disease-Causing Agents in Freshwater Turtles: Implications for Conservation and Public Health
by João Rato, Raquel Xavier, D. James Harris, Filipe Banha and Pedro Anastácio
Diversity 2024, 16(3), 171; https://doi.org/10.3390/d16030171 - 7 Mar 2024
Viewed by 2490
Abstract
Freshwater turtles comprise 81% of all chelonian species despite freshwater systems only occupying 1% of the earth’s surface, and they are commonly exploited as pets and food resources. This contact between humans and turtles may put both sides at risk of disease transmission. [...] Read more.
Freshwater turtles comprise 81% of all chelonian species despite freshwater systems only occupying 1% of the earth’s surface, and they are commonly exploited as pets and food resources. This contact between humans and turtles may put both sides at risk of disease transmission. Additionally, human impact on ecosystems can cause disease outbreaks in turtle populations. In this review, we focused on disease agents affecting freshwater turtles, intending to contribute to conservation and public health efforts. We analysed 423 articles and noted a post-SARS-COVID-19 peak, with most research originating from Asia, North America, and Europe. Emydidae was the most frequently studied family, and there was also a bias towards adults, live specimens, and native species. Since most of the studied turtles were wild-caught, we recommend that captive turtles should also be thoroughly studied since they can transmit diseases to other turtles and humans. We registered 2104 potential disease-causing agents, with Platyhelminthes dominating within Animalia, while Proteobacteria dominated bacterial agents. Viruses’ representation was low, highlighting gaps in reptile virology. Fungi, Chromista, and Protozoa were also underrepresented, but this is changing with the development of molecular tools. This synthesis serves as a foundation for targeted health assessments, conservation strategies, and future research, essential to mitigate ecosystem and public health threats. Full article
(This article belongs to the Special Issue 2024 Feature Papers by Diversity’s Editorial Board Members)
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14 pages, 4320 KiB  
Review
Nanopore Sequencing Technology as an Emerging Tool for Diversity Studies of Plant Organellar Genomes
by Jakub Sawicki, Katarzyna Krawczyk, Łukasz Paukszto, Mateusz Maździarz, Mateusz Kurzyński, Joanna Szablińska-Piernik and Monika Szczecińska
Diversity 2024, 16(3), 173; https://doi.org/10.3390/d16030173 - 7 Mar 2024
Cited by 2 | Viewed by 2878
Abstract
In this comprehensive review, we explore the significant role that nanopore sequencing technology plays in the study of plant organellar genomes, particularly mitochondrial and chloroplast DNA. To date, the application of nanopore sequencing has led to the successful sequencing of over 100 plant [...] Read more.
In this comprehensive review, we explore the significant role that nanopore sequencing technology plays in the study of plant organellar genomes, particularly mitochondrial and chloroplast DNA. To date, the application of nanopore sequencing has led to the successful sequencing of over 100 plant mitochondrial genomes and around 80 chloroplast genomes. These figures not only demonstrate the technology’s robustness but also mark a substantial advancement in the field, highlighting its efficacy in decoding the complex and dynamic nature of these genomes. Nanopore sequencing, known for its long-read capabilities, significantly surpasses traditional sequencing techniques, especially in addressing challenges like structural complexity and sequence repetitiveness in organellar DNA. This review delves into the nuances of nanopore sequencing, elaborating on its benefits compared to conventional methods and the groundbreaking applications it has fostered in plant organellar genomics. While its transformative impact is clear, the technology’s limitations, including error rates and computational requirements, are discussed, alongside potential solutions and prospects for technological refinement. Full article
(This article belongs to the Special Issue 2024 Feature Papers by Diversity’s Editorial Board Members)
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52 pages, 3850 KiB  
Article
Checklist of Basidiomycota and New Records from the Azores Archipelago
by Martin Souto, Pedro Miguel Raposeiro, Ana Balibrea and Vítor Gonçalves
Diversity 2024, 16(3), 170; https://doi.org/10.3390/d16030170 - 7 Mar 2024
Viewed by 2744
Abstract
This paper presents an annotated checklist of the Basidiomycota taxa (including lichenicolous fungi and the subdivision Pucciniomycotina) from the Azores archipelago and reviews the published records to account for their taxonomic status. The number of Basidiomycota species recorded in the Azores has increased [...] Read more.
This paper presents an annotated checklist of the Basidiomycota taxa (including lichenicolous fungi and the subdivision Pucciniomycotina) from the Azores archipelago and reviews the published records to account for their taxonomic status. The number of Basidiomycota species recorded in the Azores has increased considerably during the 20th century and now stands at 544 species. This study provides distribution data and includes changes in the nomenclature of the listed taxa. Sampling campaigns contributed to 116 new records of Basidiomycota for the Azores archipelago. In addition, there were new records for eight islands: 162 species found for the first time on São Miguel Island, 55 species new to Santa Maria Island, 33 species new to Flores Island, 15 species new to Terceira Island, 9 species new to Pico Island, 17 species new to São Jorge Island, 4 species new to Graciosa Island, and 2 species new to Corvo Island. The transformation of vegetation cover in the archipelago has been very drastic, and this is reflected in the presence of many foreign fungal species on the islands. From these data, we conclude that within Macaronesia, the diversity of Basidiomycota in the Azores is more similar to that in Madeira than in the Canary Islands. Full article
(This article belongs to the Section Microbial Diversity and Culture Collections)
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11 pages, 4515 KiB  
Article
Diversity of Fish and Decapod Fry in the Coastal Zone of Amvrakikos Gulf
by George Katselis, Nikolaos Vlahos, Constandin Koutsikopoulos and Dimitrios K. Moutopoulos
Diversity 2024, 16(3), 164; https://doi.org/10.3390/d16030164 - 6 Mar 2024
Viewed by 1875
Abstract
Amvrakikos Gulf and its surrounding coastal lagoons are of primary importance for the local biodiversity and fishing activities. Fish species inhabited the coastal lagoons based on the seasonal ongoing migration movements of fry and adult fish individuals from the sea towards the lagoons. [...] Read more.
Amvrakikos Gulf and its surrounding coastal lagoons are of primary importance for the local biodiversity and fishing activities. Fish species inhabited the coastal lagoons based on the seasonal ongoing migration movements of fry and adult fish individuals from the sea towards the lagoons. Information on the early stages of fish and decapod species in the Amvrakikos Gulf is limited only to the planktonic ontogenetic stages and reproduction biology, respectively. The aim of this study was to describe the spatial distribution of fry from commercially important fish and decapod species in the coastal zone of Amvrakikos Gulf. The seasonal appearance of the early stage of the most commercially important fish species caught in the coastal zone of the gulf ranged from one to four seasons, depending on the species. Individuals of all ontogenetic stages (fry, juveniles, and adults) were reported for several species (A. boyeri, A. fasciatus, S. abaster, S. tyfle, and B. ocellaris), indicating that these species may be regarded as residents in the coastal zone, providing habitats for their entire life cycle. The average relative abundance of the species/genera exhibited no differences compared to other Greek brackish waters. The species composition in the Amvrakikos Gulf at 10 cm and above was in agreement with the transitional nature of the area, with permanent and occasional species present. The present study emphasizes the importance of the coastal zone as a nursery habitat for commercially important species. Full article
(This article belongs to the Special Issue Diversity in 2024)
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20 pages, 1536 KiB  
Review
Sturgeon Parasites: A Review of Their Diversity and Distribution
by György Deák, Elena Holban, Isabela Sadîca and Abdulhusein Jawdhari
Diversity 2024, 16(3), 163; https://doi.org/10.3390/d16030163 - 5 Mar 2024
Cited by 2 | Viewed by 2317
Abstract
Sturgeon species have inhabited the world’s seas and rivers for more than 200 million years and hold significant taxonomic significance, representing a strong conservation interest in aquatic biodiversity as well as in the economic sector, as their meat and eggs (caviar) are highly [...] Read more.
Sturgeon species have inhabited the world’s seas and rivers for more than 200 million years and hold significant taxonomic significance, representing a strong conservation interest in aquatic biodiversity as well as in the economic sector, as their meat and eggs (caviar) are highly valuable goods. Currently, sturgeon products and byproducts can be legally obtained from aquaculture as a sustainable source. Intensive farming practices are accompanied by parasitic infestations, while several groups of parasites have a significant impact on both wild and farmed sturgeons. The present article is a review of common sturgeon parasites from the genus: Protozoa, Trematoda, Crustacea, Nematodes, Monogenea, Hirudinea, Copepoda, Acanthocephala, Cestoda, Polypodiozoa, and Hyperoartia, while also addressing their pathology and statistical distribution. Full article
(This article belongs to the Special Issue Taxonomy, Biodiversity and Ecology of Parasites of Aquatic Organisms—2nd Edition)
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19 pages, 6854 KiB  
Review
The Changing Biogeography of the Ligurian Sea: Seawater Warming and Further Records of Southern Species
by Annalisa Azzola, Carlo Nike Bianchi, Lorenzo Merotto, Alessandro Nota, Francesco Tiralongo, Carla Morri and Alice Oprandi
Diversity 2024, 16(3), 159; https://doi.org/10.3390/d16030159 - 4 Mar 2024
Cited by 6 | Viewed by 2527
Abstract
Global warming is causing poleward expansion of species ranges. Temperate seas, in particular, are undergoing a process known as ‘tropicalisation’, i.e., the combination of sea-water warming and establishment of southern species. The Ligurian Sea is one of the coldest sectors of the Mediterranean [...] Read more.
Global warming is causing poleward expansion of species ranges. Temperate seas, in particular, are undergoing a process known as ‘tropicalisation’, i.e., the combination of sea-water warming and establishment of southern species. The Ligurian Sea is one of the coldest sectors of the Mediterranean and has thus been characterized by a dearth of warm-temperate species and a comparative abundance of cold-temperate species. This paper uses a time series of sea surface temperature (SST) and new records of thermophilic fish species to reconsider the biogeography of the Ligurian Sea. SST has risen by about 0.7 °C on average between 1948 and 2023, but two phases may be distinguished: a cool one (ended in the mid-1980s) and a warm one (still ongoing); the latter phase shows alternating periods of rapid warming and comparatively stationary temperature. The arrival of thermophilic species coincided with the periods of rapid warming; some of these species were established in the subsequent stationary periods. Heatwaves and climate-related diseases associated with the periods of rapid warming have caused mass mortalities of autochthonous species. Our knowledge on the biogeography of the Ligurian Sea was established during the cool phase; the present situation, however, calls for re-defining the chorological spectrum of the Ligurian Sea biota. Full article
(This article belongs to the Special Issue The Ligurian Sea and the National Biodiversity Future Centre (NBFC): Biodiversity Conservation in a Temperate Marine Environment under Threat)
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28 pages, 11826 KiB  
Article
Molecular Diversity of the Genus Plagiorchis Lühe, 1899 in Snail Hosts of Central Europe with Evidence of New Lineages
by Petra Kundid, Camila Pantoja, Kristýna Janovcová and Miroslava Soldánová
Diversity 2024, 16(3), 158; https://doi.org/10.3390/d16030158 - 1 Mar 2024
Cited by 1 | Viewed by 1892
Abstract
Cercariae of Plagiorchis spp. are frequently reported in European freshwater snails, but their true diversity is difficult to estimate due to subtle differences in morphology. We molecularly characterized 67 isolates of Plagiorchis cercariae collected from four lymnaeid snail hosts, Ampullaceana balthica, Ampullaceana [...] Read more.
Cercariae of Plagiorchis spp. are frequently reported in European freshwater snails, but their true diversity is difficult to estimate due to subtle differences in morphology. We molecularly characterized 67 isolates of Plagiorchis cercariae collected from four lymnaeid snail hosts, Ampullaceana balthica, Ampullaceana lagotis, Radix auricularia and Lymnaea stagnalis in freshwater ecosystems in the Czech Republic and Poland. Based on mitochondrial cox1 and nuclear 28S sequences, ten species or species-level lineages were identified, including the first molecular evidence of P. vespertilionis from snail hosts and two species-level lineages reported for the first time. Previously undescribed species and species-level lineages are characterized morphometrically. We confirm the overlapping spatial distribution of Plagiorchis spp. in their snail hosts from Central Europe with those from Western and sub-Arctic Europe. Our results increase the known diversity of Plagiorchis spp. in Europe to 25 species/lineages in snails, but further research is needed to establish links between life cycle stages and to assess the host specificity of these parasites. Full article
(This article belongs to the Special Issue Diversity and Phylogenetics of Parasites in Aquatic Animals)
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16 pages, 6603 KiB  
Article
Aspects of Breeding Performance of Scopoli’s Shearwater (Calonectris diomedea): The Case of the Largest Colony in Greece
by Georgios Karris, Stavros Xirouchakis, Konstantinos Poirazidis, Marios-Dimitrios Voulgaris, Anastasia Tsouroupi, Spyros Sfenthourakis and Sinos Giokas
Diversity 2024, 16(3), 150; https://doi.org/10.3390/d16030150 - 27 Feb 2024
Viewed by 2065
Abstract
Here we report, for the first time, aspects of the breeding performance of Scopoli’s Shearwater (Calonectris diomedea) in one of its largest colonies in Europe, i.e., in the Strofades island group. We describe the chronology of the main events in the [...] Read more.
Here we report, for the first time, aspects of the breeding performance of Scopoli’s Shearwater (Calonectris diomedea) in one of its largest colonies in Europe, i.e., in the Strofades island group. We describe the chronology of the main events in the breeding cycle of this species on Stamfani Island, the largest island of this island group, including the evaluation of breeding performance and the influence of ecological factors (nesting habitat, nest type, nest-entrance orientation, and occupation rate per nest) on breeding success. The Scopoli’s Shearwater colony of Stamfani Island exhibited a high degree of breeding synchrony and nest site tenacity. The data obtained by monitoring 472 nests during five consecutive years (2008–2012), showed a breeding success (fledging per occupied nest per year) of up to 66.6%. In addition, hatching success (chick hatched successfully per egg laid) was 76.9%, and fledging success (fledging young per chick hatched successfully) was 86.8%. We also observed annual variations in breeding performance during that period. These results seemed to be influenced positively by the breeding experience of the pair. Furthermore, the type of nest site and the nest-entrance orientation were found to have an effect on breeding success rates, whereas the nesting habitat did not, indicating low predation risk by rats. Full article
(This article belongs to the Special Issue Ecology, Diversity and Conservation of Seabirds)
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30 pages, 9713 KiB  
Review
A Review of the Paleobiology of Some Neogene Sharks and the Fossil Records of Extant Shark Species
by Olaf Höltke, Erin E. Maxwell and Michael W. Rasser
Diversity 2024, 16(3), 147; https://doi.org/10.3390/d16030147 - 26 Feb 2024
Viewed by 4859
Abstract
In recent years, new findings and new methods (stable isotopes of oxygen, zinc, and nitrogen; 2D and 3D modeling; and geometric morphometric analyses of the teeth) have enhanced our knowledge of the Neogene shark fauna and its paleobiology. Several papers deal with the [...] Read more.
In recent years, new findings and new methods (stable isotopes of oxygen, zinc, and nitrogen; 2D and 3D modeling; and geometric morphometric analyses of the teeth) have enhanced our knowledge of the Neogene shark fauna and its paleobiology. Several papers deal with the large Otodus (Megaselachus) species, including the construction of a 3D model, as well as insights into its lifestyle and diet. In addition, the skeletal remains of Carcharias gustrowensis, Carcharodon hastalis, and Keasius parvus and a natural tooth set of Carcharodon hubbelli have been described in the last 13 years, and the dentition of the Neogene species Carcharoides catticus, Megachasma applegatei, and Parotodus benedenii has been reconstructed. Stable isotope analyses of the teeth from the Neogene species of Araloselachus, Carcharias, Carcharodon, Galeocerdo, Hemipristris, and Mitsukurina have given insights into the trophic positions of these genera during the Neogene, and shark teeth preserved near the skeletal remains of prey animals (mammals) and shark bite traces on these remains provide direct evidence of trophic interactions. The tooth shape, fossil locality, and paleoenvironment have been used to better understand the taxa Carcharhinus dicelmai, Megalolamna paradoxodon, Pachyscyllium dachiardii, and P. distans. Among extant species, Galeorhinus galeus can be traced back to the Eocene. Alopias superciliosus, Rhincodon typus, and possibly A. vulpinus can be traced back to the Oligocene. Species present by the Miocene include Alopias vulpinus, Carcharhinus amblyrhynchoides, C. amblyrhynchos, C. albimarginatus, C. amboinensis, C. brachyurus, C. brevipinna, C. falciformis, C. glaucus, C. leucas, C. limbatus, C. longimanus, C. macloti, C. obscurus, C. perezi, C. sealei, Centrophorus granulosus, Cetorhinus maximus, Dalatias licha, Deania calcea, Galeocerdo cuvier, Glyphis glyphis, Heptranchias perlo, Isurus paucus, Lamna nasus, Negaprion brevirostris, Odontaspis ferox, Pseudocarcharias kamoharai, Sphyrna media, S. mokarran, and possibly Carcharodon carcharias. First appearing in the Pliocene are Scymnodon ringens, Somniosus rostratus, and Zameus squamulosus. For some extant species (Carcharias taurus, Hexanchus griseus, Isurus oxyrinchus, Notorynchus cepedianus, and Sphyrna zygaena), it is not clear whether the assigned Neogene teeth represent the same species. The application of new methods to more fossil shark taxa, a detailed search for shark fossils, and better knowledge of the dentition of extant species (especially those with minute-sized teeth) will further enhance our knowledge of the evolution and paleobiology of sharks. Full article
(This article belongs to the Special Issue Shark Ecology)
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14 pages, 10842 KiB  
Article
GPS Tracking Reveals the White-Tailed Eagle Haliaeetus albicilla as an Ambassador for the Natura 2000 Network
by Remo Probst, Matthias Schmidt, Michael McGrady and Christian Pichler
Diversity 2024, 16(3), 145; https://doi.org/10.3390/d16030145 - 25 Feb 2024
Viewed by 2374
Abstract
The Natura 2000 network of protected areas is the backbone of species conservation in the European Union. We investigated whether Austrian-hatched white-tailed eagles (Haliaeetus albicilla) make particular use of this multinational network during their natal dispersal, and what habitats were of [...] Read more.
The Natura 2000 network of protected areas is the backbone of species conservation in the European Union. We investigated whether Austrian-hatched white-tailed eagles (Haliaeetus albicilla) make particular use of this multinational network during their natal dispersal, and what habitats were of importance to the eagles. We analyzed the utilization distribution of 907,466 GPS locations from 38 dispersing white-tailed eagles using a dynamic Brownian Bridge Movement Model. Eagles ranged over a huge area of central-eastern Europe. Natura 2000 sites overlapped with 67% of the resulting 50% isopleth; i.e., a high probability of utilization of Natura 2000 areas by white-tailed eagles was found. White-tailed eagles used wetlands, waterbodies, and deciduous forests adjacent to wet habitats disproportionately often. Coniferous forests and settlements were avoided. Anthropogenically caused mortalities hardly occurred within Natura 2000 sites. Our study suggests that the Natura 2000 network is a crucial tool for conserving the white-tailed eagle. This top predator is an ambassador for the Natura 2000 idea during all life stages, and should continue to be a conservation priority of the network. Full article
(This article belongs to the Special Issue Ecology and Conservation of the White-Tailed Eagle and Golden Eagle)
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24 pages, 13089 KiB  
Article
And Yet They Differ: Reconsiderations of Diversity within Dactylochelifer latreillii (Arachnida: Pseudoscorpiones)
by Christoph Muster, Jan Korba, Petr Bogusch, Petr Heneberg and František Šťáhlavský
Diversity 2024, 16(3), 137; https://doi.org/10.3390/d16030137 - 23 Feb 2024
Cited by 2 | Viewed by 1751
Abstract
Morphological stasis is a widespread characteristic of pseudoscorpions, suggesting that much cryptic diversity remains unexplored. Here, we revise the polytypic species Dactylochelifer latreillii in the framework of an integrative taxonomic approach, using DNA barcoding, multivariate ratio analysis, geometric morphometry of the male foretarsus, [...] Read more.
Morphological stasis is a widespread characteristic of pseudoscorpions, suggesting that much cryptic diversity remains unexplored. Here, we revise the polytypic species Dactylochelifer latreillii in the framework of an integrative taxonomic approach, using DNA barcoding, multivariate ratio analysis, geometric morphometry of the male foretarsus, and genitalic morphology. The pattern of mitochondrial variation suggests three species-level entities in central Europe, which widely overlap in morphospace, but differentiate in the structure of the female genitalia, and by their ecology. Dactylochelifer latreillii (Leach) is a halobiont species, occurring exclusively in coastal habitats and in Pannonian salt steppes, and D. l. septentrionalis Beier syn. nov. is a junior synonym of the nominate species. Dactylochelifer degeerii (C. L. Koch) stat. rev. is the oldest available name for an inland species that has long been mistaken for the nominotypical subspecies of D. latreillii. New habitat information suggests a preference for higher shrub vegetation. Dactylochelifer ninnii (Canestrinii) stat. rev. is a halophilic Mediterranean species that extends to the northern limits of the Pannonian basin. The distinctiveness of the Mediterranean “form” was recognized by early naturalists in the 19th century, but was ignored by later authorities in the field. Full article
(This article belongs to the Special Issue Evolutionary Patterns and Diversity of Arachnida)
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9 pages, 4624 KiB  
Communication
Millepora spp. as Substrates of Their Hydrozoan Counterparts Stylaster sp. in the Pacific Ocean
by Chloé Julie Loïs Fourreau, Daniela Pica, Emmeline A. Jamodiong, Guillermo Mironenko Castelló, Iori Mizukami and James Davis Reimer
Diversity 2024, 16(3), 142; https://doi.org/10.3390/d16030142 - 23 Feb 2024
Cited by 1 | Viewed by 2039
Abstract
The association between two hydrozoans, Stylaster sp. and Millepora spp., has been described as a case of pseudo-auto-epizoism, and has only been reported from the Caribbean region of the Atlantic Ocean. Here, we report on the occurrence of this association in the Pacific [...] Read more.
The association between two hydrozoans, Stylaster sp. and Millepora spp., has been described as a case of pseudo-auto-epizoism, and has only been reported from the Caribbean region of the Atlantic Ocean. Here, we report on the occurrence of this association in the Pacific Ocean on coral reefs around Iriomote-jima Island, Japan, suggesting the association to be more widespread than had previously been thought. Moreover, Stylaster sp. colonies were observed living healthily on bleached and dead branches of Millepora spp., indicating that this interaction is facultative. The interaction reported here differs from the relationship between the Caribbean Stylaster roseus and Millepora alcicornis by the connection points between the two partners, which is made evident by the whitening of the Millepora counterpart in Iriomote-jima Island, while being seamless in the Caribbean association. Further research is necessary to fully understand the nature of these relationships, comprehending under what conditions it occurs, and establishing which species are involved in the interactions. Full article
(This article belongs to the Special Issue 2024 Feature Papers by Diversity’s Editorial Board Members)
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50 pages, 37446 KiB  
Article
A Mitogenome-Based Phylogeny of Pilargidae (Phyllodocida, Polychaeta, Annelida) and Evaluation of the Position of Antonbruunia
by Sonja Huč, Avery S. Hiley, Marina F. McCowin and Greg W. Rouse
Diversity 2024, 16(3), 134; https://doi.org/10.3390/d16030134 - 21 Feb 2024
Viewed by 3209
Abstract
Pilargidae is a family of free-living and burrowing marine annelids. A lack of available molecular data for most of these species has precluded a molecular assessment of their phylogenetic relationships and has left uncertain the placement of Antonbruunia, which is hypothesized to [...] Read more.
Pilargidae is a family of free-living and burrowing marine annelids. A lack of available molecular data for most of these species has precluded a molecular assessment of their phylogenetic relationships and has left uncertain the placement of Antonbruunia, which is hypothesized to be either a member of Pilargidae or its sister clade, the monotypic family Antonbruunidae. In this study, we describe the new species Antonbruunia milenae sp. nov., found at 845 m of depth off the coast of San Diego, California, USA, and we address the phylogeny of these organisms using 15 novel mitogenomes and multiple Sanger-sequenced loci. Our results show that Antonbruunia falls within Pilargidae, making Antonbruunidae a junior synonym of Pilargidae. Glyphohesione was transferred from Pilarginae to Synelminae, the previously unassigned genera Otopsis and Antonbruunia were shown to belong within Synelminae, and Hermundura was assigned to Phyllodocida incertae sedis. Sigambra was found to be non-monophyletic. Four different mitogenome gene orders were found among Pilargidae. Changes between the gene orders and the ancestral state gene order of the family were inferred. Two species have introns within the COI gene. These efforts represent a significant expansion of the available molecular resources for pilargids, as well as the basis for a more stable taxonomy. Full article
(This article belongs to the Special Issue Diversity in 2023)
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14 pages, 960 KiB  
Review
Opportunities for Biodiversity Conservation via Urban Ecosystem Regeneration
by Gad Perry and Robert D. Cox
Diversity 2024, 16(3), 131; https://doi.org/10.3390/d16030131 - 20 Feb 2024
Cited by 3 | Viewed by 3459
Abstract
Conservation traditionally focuses on at-risk species and relatively intact ecosystems. As the human population and our global impact have risen, many more species and ecosystems are at risk and fewer intact ecosystems remain, with urbanization being a major contributing factor. Cities and their [...] Read more.
Conservation traditionally focuses on at-risk species and relatively intact ecosystems. As the human population and our global impact have risen, many more species and ecosystems are at risk and fewer intact ecosystems remain, with urbanization being a major contributing factor. Cities and their inhabitants are here to stay, and the prevalence of urbanization, often in the vicinity of areas of high conservation value, requires reconsideration of the conservation value of urban ecosystems and urban green spaces. Our aim is to explore the practical aspects of such actions. Urban ecosystem regeneration will require the incorporation of strategies for urban ecosystem regeneration into an overall conservation policy. The novel paradigm of urban ecosystem regeneration, advocated here, maximizes the capacity of urban spaces to support biodiversity while reducing undesirable outcomes and enhancing human wellbeing. The potential for cities to exacerbate biological invasion, climate change, and other ecosystem-degrading factors requires particular attention in devising a strategy for conservation in urban spaces, made essential by the predicted further spread of cities across the globe. Full article
(This article belongs to the Special Issue Diversity in 2024)
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14 pages, 2407 KiB  
Article
Mass Mortality Event of Mediterranean Mussels (Mytilus galloprovincialis) in the Middle Adriatic: Potential Implications of the Climate Crisis for Marine Ecosystems
by Luca Bracchetti, Martina Capriotti, Massimiliano Fazzini, Paolo Cocci and Francesco Alessandro Palermo
Diversity 2024, 16(3), 130; https://doi.org/10.3390/d16030130 - 20 Feb 2024
Cited by 3 | Viewed by 2151
Abstract
The effects of the climate crisis are affecting ecosystems at different scales and magnitudes. This paper focuses on a massive Mediterranean mussel die-off observed along the middle Italian Adriatic coast in the summer of 2022. We considered the possible environmental causes of this [...] Read more.
The effects of the climate crisis are affecting ecosystems at different scales and magnitudes. This paper focuses on a massive Mediterranean mussel die-off observed along the middle Italian Adriatic coast in the summer of 2022. We considered the possible environmental causes of this phenomenon and carried out a climatic analysis of the last decade. We performed field surveys in different locations along a 16 km coastal stretch from Martinsicuro (TE) in the south, to Grottammare (AP) in the north. The study area includes two marine Sites of Community Importance under the European Natura 2000 network. The die-off of the mussels was observed in practically all the natural mussel beds colonizing the study area. As sessile filter-feeding organisms inhabiting the intertidal zone, mussels are highly exposed to variations in environmental conditions such as temperature and nutrient load. We discuss the possible causes of this die-off, proposing that high temperature and the scarce availability of food acted simultaneously as stress factors, generating local unsustainable living conditions for this species. Full article
(This article belongs to the Topic Marine Ecology, Environmental Stress and Management)
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16 pages, 43442 KiB  
Article
Unrecognised Ant Megadiversity in the Australian Monsoonal Tropics III: The Meranoplus ajax Forel Complex
by Alan N. Andersen, François Brassard and Benjamin D. Hoffmann
Diversity 2024, 16(2), 126; https://doi.org/10.3390/d16020126 - 16 Feb 2024
Cited by 1 | Viewed by 1568
Abstract
Australia’s monsoonal (seasonal) tropics are a global centre of ant diversity, but are largely unrecognised as such because the vast majority of its species are undescribed. Here we document another case of undescribed hyper-diversity within a taxon that is formally recognised as a [...] Read more.
Australia’s monsoonal (seasonal) tropics are a global centre of ant diversity, but are largely unrecognised as such because the vast majority of its species are undescribed. Here we document another case of undescribed hyper-diversity within a taxon that is formally recognised as a single, widespread species, Meranoplus ajax Forel. We recognise 50 species among 125 specimens of M. ‘ajax’ that we CO1-barcoded, integrating CO1 clustering and divergence, morphological differentiation and geographic distribution. A large proportion (44%) of these species are represented by single records, indicating that very many additional species are yet to be collected in this extremely remote and sparsely populated region. Sampling has been concentrated in the Northern Territory, where 27 of the 50 species occur. If diversity in Western Australia and Queensland were similar to that in the Northern Territory, as appears likely, then the M. ajax complex would comprise >100 species. In 2000, when Australia’s monsoonal ant fauna was estimated to contain 1500 species, Meranoplus ajax was considered to represent a single species. Our previous analyses of a range of other taxa have shown that their diversity has been similarly under-appreciated in this estimate. Our findings suggest that the total number of ant species in monsoonal Australia is several thousand, which would make the region by far the world’s richest known. Full article
(This article belongs to the Special Issue 2024 Feature Papers by Diversity’s Editorial Board Members)
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12 pages, 2996 KiB  
Article
Habitat Impacts on the Golden Eagle’s Foraging Ecology and Nest Site Selection in Poland
by Marian Stój, Robert Kruszyk, Dorota Zawadzka and Grzegorz Zawadzki
Diversity 2024, 16(2), 123; https://doi.org/10.3390/d16020123 - 14 Feb 2024
Cited by 1 | Viewed by 2609
Abstract
The Golden Eagle Aquila chrysaetos (hereafter GE) is one of Europe’s largest avian top predators. The present study recognizes the habitat characteristics and food composition of the GE in Poland. The research was carried out in the Polish part of the Carpathian Mountains. [...] Read more.
The Golden Eagle Aquila chrysaetos (hereafter GE) is one of Europe’s largest avian top predators. The present study recognizes the habitat characteristics and food composition of the GE in Poland. The research was carried out in the Polish part of the Carpathian Mountains. The GEs built nests mainly on old coniferous trees and strongly preferred the Silver Fir Abies alba. On average, within a 5 km buffer around the nest, forests covered about 2/3 of the area, while open land with villages was at 31% and water was about 1%. Birds preferred areas with less forest cover than in the random points, but the nests were significantly further from the countryside than the distance measured for the drawn points distributed in the GEs’ range in Poland. Their diet during the breeding season was assessed by analyzing pellets and food remains. The proportion of birds was 55.7%, mammals was 43.4%, and reptiles was 0.9%. The ten most common prey species included the Domestic Pigeon Columba livia, the Ural Owl Strix uralensis, the Tawny Owl Strix aluco, the Buzzard Buteo buteo, the Roe Deer Capreolus capreolus, the Martens Martes sp., and the Red Fox Vulpes vulpes, which composed 70% of food items. Our results showed that the GE is a top predator, as evidenced by the high share of other predators—both mammal and bird species—in its diet, which constituted about 34% of identified preys. The diet of the studied GE population showed geographical variation, suggesting local adaptations to available prey species. The share of Roe Deer increased from west to east, indicating a higher availability in the less urbanized eastern part of the country. An analysis of general food categories showed that, as latitude increased, the share of captured birds among prey of the GEs declined, while the percentage of forest prey increased. Pigeons were prey of the GEs mainly in the western part of their range. The GEs often captured species with nocturnal activity—owls and martens, which were identified in most of the GEs’ territories. The proportion of mammals in the diet of the GE increased with an increase in the proportion of open areas, while the abundance of birds of prey and owls in the diet correlated with a higher proportion of forests. The greatest threat to Poland’s GE population is the reduction in semi-open areas with low human activity and low human population densities. Full article
(This article belongs to the Section Animal Diversity)
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15 pages, 3357 KiB  
Article
The Bee Communities of Young Living Lavender Farm, Mona, Utah, USA
by Joseph S. Wilson, Jacob G. Young and Lindsey Topham Wilson
Diversity 2024, 16(2), 119; https://doi.org/10.3390/d16020119 - 13 Feb 2024
Cited by 1 | Viewed by 7724
Abstract
It is now widely recognized that bees are among the most important pollinators worldwide, yet the bee faunas of many regions and habitats remain inadequately documented. The Great Basin Desert in North America is thought to host some of the richest bee communities [...] Read more.
It is now widely recognized that bees are among the most important pollinators worldwide, yet the bee faunas of many regions and habitats remain inadequately documented. The Great Basin Desert in North America is thought to host some of the richest bee communities in the world, as indicated by several studies documenting diverse bee faunas in the region’s natural habitats. However, limited attention has been given to the bee communities present on agricultural lands within the Great Basin Desert. Here, we describe a rich bee community housed at the Young Living Lavender Farm in Juab County, Utah, near the eastern edge of the Great Basin Desert. Our survey of bees on this farm identified 68 bee species across 22 genera. This represents 34% of the bee species known from the county, including 34 new county records. Among the numerous flower species cultivated at the farm, we found that lavender supported the richest bee community, with 32 species collected from cultivated lavender fields. While lavender is frequently recommended for homeowners to plant in support of pollinators, our study is among the first to provide a list of bee species that visit lavender in western North America. Furthermore, our results demonstrate that agricultural lands, particularly those implementing pollinator-friendly farming practices, can support rich bee communities in the Great Basin Desert. Full article
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21 pages, 4418 KiB  
Article
Effects of Non-Native Annual Plant Removal on Native Species in Mediterranean-Climate Shrub Communities
by Priscilla M. Ta, Emily Griffoul, Quinn Sorenson, Katharina T. Schmidt, Isaac Ostmann, Travis E. Huxman, Jennifer J. Long, Kathleen R. Balazs, Jutta C. Burger, Megan Lulow and Sarah Kimball
Diversity 2024, 16(2), 115; https://doi.org/10.3390/d16020115 - 9 Feb 2024
Viewed by 2280
Abstract
Removal of non-native plants is known to increase overall native cover within degraded communities that contain at least a small percentage of native plant cover. We investigated the mechanisms behind this pattern, asking whether removal of non-native annual species increases the density and [...] Read more.
Removal of non-native plants is known to increase overall native cover within degraded communities that contain at least a small percentage of native plant cover. We investigated the mechanisms behind this pattern, asking whether removal of non-native annual species increases the density and species richness of the native community through increased seedling recruitment or through the growth of established native shrubs. We also investigated whether the effectiveness of non-native removal was influenced by region (coastal versus inland) and whether there was a threshold of native cover required for invasive removal to be effective. We established 13 study sites (7 coastal and 6 inland) located throughout the Nature Reserve of Orange County, CA, USA. Each degraded site contained four paired plots corresponding to a range of existing native plant cover: low 20–29%, medium-low 30–39%, medium-high 40–49%, and high cover 50–59% with one plot per pair subjected to non-native removal. We collected plant density, species richness, and established native shrub volume measurements to clarify the effectiveness of non-native removal. Non-native plant removal reduced non-native annual recruitment, increased that of native shrub seedlings, but had no impact on native forb recruitment. Non-native removal increased the number and reduced mortality of established native shrubs but did not influence shrub size. Native seedling density, species richness, and established native shrub number were highest inland, but coastal sites had larger adult shrubs. We found that non-native removal was most effective for increasing native density and species richness for degraded inland sites with less than 40% of existing native cover. The initial native cover did not affect established shrub volume or number. Our results confirm the importance of non-native plant removal in areas with medium-low or low native cover to increase native recruitment, species richness, adult shrub number, and to reduce established shrub mortality, especially during extreme drought. Full article
(This article belongs to the Section Biodiversity Conservation)
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19 pages, 9192 KiB  
Article
The Forest Refugium of the Bükk Mountains, Hungary—Vegetation Change and Human Impact from the Late Pleistocene
by Katalin Náfrádi and Pál Sümegi
Diversity 2024, 16(2), 109; https://doi.org/10.3390/d16020109 - 8 Feb 2024
Cited by 1 | Viewed by 1838
Abstract
The Rejtek I. Rock Shelter in the Bükk Mountains of the inner Western Carpathian region plays an important role in the Late Pleistocene and Holocene environmental historical analyses. The investigations of the cave sediment accumulated from the end of the Pleistocene and the [...] Read more.
The Rejtek I. Rock Shelter in the Bükk Mountains of the inner Western Carpathian region plays an important role in the Late Pleistocene and Holocene environmental historical analyses. The investigations of the cave sediment accumulated from the end of the Pleistocene and the recovered paleontological finds, together with the archaeological artefacts, provided an opportunity to develop stratigraphic classifications. In addition, by comparing archaeostratigraphic, lithostratigraphic and biostratigraphic data, it was possible to link environmental and prehistoric events. The importance of the site is shown by both the mollusc and floral cold- and warm-tolerant species that were present in the area during the Late Pleistocene. The early expansion of thermophilous species indicates the presence of a refuge already during the Late Pleistocene. Based on the documents of the excavation, the previous works, the sediment sequence, as well as the sediment samples and the filling material of the mollusc shells, together with the new chronology, we were able to clarify the relative order of the excavated layers and the description of the sediment types in the Rejtek I. Rock Shelter. Full article
(This article belongs to the Section Phylogeny and Evolution)
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52 pages, 18448 KiB  
Article
A Taxonomic Review of South African Indigenous Meliaceae Using Molecular Systematics and Anatomical Data
by Mariam Oyefunke Oyedeji Amusa, Ross Dylan Stewart, Michelle van der Bank and Ben-Erik van Wyk
Diversity 2024, 16(2), 113; https://doi.org/10.3390/d16020113 - 8 Feb 2024
Cited by 1 | Viewed by 3752
Abstract
The Meliaceae are broadly distributed worldwide, with about 50 genera and over 1400 species. There are 11 genera in South Africa, with 13 indigenous and three naturalized species. Considering the diversity of the indigenous species of this family in South Africa and the [...] Read more.
The Meliaceae are broadly distributed worldwide, with about 50 genera and over 1400 species. There are 11 genera in South Africa, with 13 indigenous and three naturalized species. Considering the diversity of the indigenous species of this family in South Africa and the lack of recent studies encompassing these species, a taxonomic revision of the South African indigenous species of Meliaceae is presented here. Phylogenetic analysis, anatomical data, herbarium collections, and online data sources were used in this study. The results confirm the monophyly of Melioideae and Swietenioideae. The incongruence of Turraea previously reported was resolved in this study. Most representative genera of South African Meliaceae were recovered monophyletic with strong support. However, multiple samplings of species and including more markers could provide a better understanding of the relationships among South African species of Meliaceae. The review of the taxonomy of the South African Meliaceae, and especially the study of diagnostic characters and hitherto recorded natural distributions, have value in providing an up-to-date inventory of the indigenous genera and species and an easy means of identifying the taxa. Anatomical characters may be of systematic value to explore higher-level relationships in the family. This study is a contribution to tropical botany and to a more comprehensive database for the Meliaceae. Full article
(This article belongs to the Special Issue 2024 Feature Papers by Diversity’s Editorial Board Members)
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18 pages, 10868 KiB  
Article
The Role of Vegetation in Elevational Diversity Patterns of Tenebrionid Beetles in Central Italy
by Simone Fattorini
Diversity 2024, 16(2), 110; https://doi.org/10.3390/d16020110 - 8 Feb 2024
Cited by 2 | Viewed by 1627
Abstract
Vegetation tends to vary in a systematic fashion along elevational gradients, leading to the possibility of recognizing distinct vegetational belts, which are frequently used to describe and interpret elevational variations in biodiversity. However, anthropogenic changes can create landscapes dominated by secondary grasslands in [...] Read more.
Vegetation tends to vary in a systematic fashion along elevational gradients, leading to the possibility of recognizing distinct vegetational belts, which are frequently used to describe and interpret elevational variations in biodiversity. However, anthropogenic changes can create landscapes dominated by secondary grasslands in areas formerly occupied by forests, thus altering the natural sequence of vegetation types. The present research illustrates how the distribution of tenebrionid beetles in central Italy is influenced by secondary vegetation. Classical schemes of vegetational belts were modified into a scheme of main vegetation types that include secondary vegetations. Tenebrionid species presence/absence in each vegetation type was then assessed. Species richness tended to decrease with elevation in both natural and secondary vegetations. Geophilous (ground-dwelling) species (which include many endemics) prevailed in natural and secondary grasslands, while xylophilous species (associated with trees) prevailed in the natural forests. Similarities in tenebrionid composition indicated the presence of two main groups: one associated with forests and the other with natural and secondary grasslands. Geophilous species prevailed among tenebrionids with Mediterranean distributions, whereas xylophilous species prevailed among species distributed mainly in Europe and the Palearctic. High values of richness, biogeographical complexity and proportion of endemics make secondary vegetations of high conservation concern. Full article
(This article belongs to the Special Issue Diversity in 2023)
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29 pages, 7045 KiB  
Article
The Trèmols Herbarium: A European Herbarium from the End of the 19th Century
by Laura Gavioli, Neus Nualart, Jordi López-Pujol and Neus Ibáñez
Diversity 2024, 16(2), 105; https://doi.org/10.3390/d16020105 - 6 Feb 2024
Viewed by 1873
Abstract
The herbarium Trèmols, preserved in the Botanical Institute of Barcelona (IBB), was created during the second half of the 19th century by the Catalan chemist and botanist Frederic Trèmols Borrell (Cadaqués 1831–1900). He was a member of important scientific institutions, including the Real [...] Read more.
The herbarium Trèmols, preserved in the Botanical Institute of Barcelona (IBB), was created during the second half of the 19th century by the Catalan chemist and botanist Frederic Trèmols Borrell (Cadaqués 1831–1900). He was a member of important scientific institutions, including the Real Acadèmia de Ciències i Arts de Barcelona, the Societat Botànica Barcelonesa, the Société Botanique de France, and the Société Helvétique pour l’Échange des Plantes. The value of this herbarium lies in the large volume of specimens that it preserves (12,953) and the high percentage (61.9%) of material of foreign origin that it contains. The Trèmols herbarium was completely digitised in 2019 as part of a wider study that is aimed to classify, digitise, document, review, and, finally, make the IBB historical herbaria available to the scientific community. Herein, we provide a general overview of the almost 13,000 specimens of this collection, which can give valuable insight into the flora that existed more than 100 years ago. Full article
(This article belongs to the Special Issue Herbaria: A Key Resource for Plant Diversity Exploration)
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55 pages, 12543 KiB  
Article
Marine Crabs of Guinea-Bissau, with Emphasis on the Deep Fauna, Supported by an Integrative Taxonomy
by Isabel Muñoz, José Enrique García-Raso, Pere Abelló and Jose A. Cuesta
Diversity 2024, 16(2), 93; https://doi.org/10.3390/d16020093 - 1 Feb 2024
Cited by 1 | Viewed by 3453
Abstract
The updated checklist of the marine crabs of Guinea-Bissau presented in this work is the result of consolidating decades of research, ongoing systematic revisions of the regional carcinofauna, and the inclusion of new records. DNA markers and morphological analyses for accurate identifications are [...] Read more.
The updated checklist of the marine crabs of Guinea-Bissau presented in this work is the result of consolidating decades of research, ongoing systematic revisions of the regional carcinofauna, and the inclusion of new records. DNA markers and morphological analyses for accurate identifications are integrated. Sixty-one species are mentioned in this list after reviewing specimens from scientific collections and literature. Of these 61 species listed, the presence of 51 species in Guinea-Bissau is confirmed, and 21 are reported for the first time in the area. A total of 98 sequences were obtained from 41 species (51 of 16S for 38 species and 47 of COI for 35 species), and 48 sequences (24 of 16S and 24 of COI) were the first ones obtained for 29 species. The maximum or minimum bathymetric range is expanded by 16 species, and for other six species, a color description is provided for the first time. Merocryptus obsoletus is synonymized as Merocryptus boletifer. The present study will be a useful baseline for gathering further ecological information about globally important marine taxa, not only in Guinea-Bissau but about African brachyurans in general. Full article
(This article belongs to the Section Marine Diversity)
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35 pages, 8363 KiB  
Article
The Mexican Balsam, Impatiens mexicana Rydb: A Redescription Based on Morphological and Phylogenetic Studies, with an Update of the Current Geographical Range of the Species
by René Monzalvo, Diana Lizbeth Escorcia-Guerrero, Mario Adolfo García-Montes, Agnieszka Rewicz, Tomasz Rewicz and Norma L. Manríquez-Morán
Diversity 2024, 16(2), 87; https://doi.org/10.3390/d16020087 - 31 Jan 2024
Cited by 1 | Viewed by 3191
Abstract
Impatiens mexicana is a native balsam restricted to the cloud forests of central and southwest Mexico, which is currently known to exist in four states (Zacatecas, Veracruz, Puebla, and Oaxaca), and is probably threatened by geographic restriction. Morphological and distributional information about this [...] Read more.
Impatiens mexicana is a native balsam restricted to the cloud forests of central and southwest Mexico, which is currently known to exist in four states (Zacatecas, Veracruz, Puebla, and Oaxaca), and is probably threatened by geographic restriction. Morphological and distributional information about this species is still scarce, with only a couple of investigations since its first description in 1910, which means the phylogenetic position of this species has yet to be placed. In order to contribute to knowledge of I. mexicana, morphological and molecular studies were carried out with material collected in the localities of Hidalgo, Veracruz, and Oaxaca, during expeditions from July to October 2021 and in 2022. The specimens selected were measured, photographed, and compared with morphological information from the six American balsams. At the same time, phylogenetic studies were carried out by using two regions of the cpDNA and one of the nrDNA. We report I. mexicana for the first time in Hidalgo state, and identify new registers in the Veracruz and Oaxaca localities, thus increasing the knowledge in its geographic distribution. We also redescribe the Mexican balsam by using new and complementary traits: we note that while the species is morphologically similar to I. capensis, it is distinguished by differences in flower color, the distribution of spot patterns on the upper petal, lower sepal, and lateral petals, and geographic information such as endemic geographic distribution in Mexico’s Tropical Montane Cloud Forest (TMCF). We also carried out phylogenetic analyses by using ITS and ITS + atpb-rbcL, which showed the Mexican balsam was independent from its Asian-American congeners. Interestingly, our genetic distance analyses reveal differences of 0.01–0.16% between I. mexicana and the other North American congeners that use ITS, atpb-rbcL and trnL-F, both independently and as concatenated genes: this low divergence most likely occurred because of the recent diversification of the group. However, both future redescriptions and phylogenetic studies in American species are imperative, as this will enable better discrimination. Full article
(This article belongs to the Special Issue Recent Advances and Future Perspectives for Balsaminaceae Research)
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12 pages, 3680 KiB  
Article
Co-Evolution of Iolana Blues with Their Host Plants and the Higher Phylogeny of Subtribe Scolitantidina (Lepidoptera, Lycaenidae)
by Vazrick Nazari, Sergio Montagud Alario, Loukia Spilani, Vlad Dincă, Alireza Naderi, Wolfgang ten Hagen and Roger Vila
Diversity 2024, 16(2), 89; https://doi.org/10.3390/d16020089 - 30 Jan 2024
Cited by 1 | Viewed by 1966
Abstract
We investigated the evolutionary relationships between the taxa in the butterfly genus Iolana Bethune-Baker, 1914 and others in the subtribe Scolitantidina using information from nine DNA markers (COI-COII, ND1, ITS2, 28S, CAD, EF-1α, wg, and H3). We show that the genus Iolana originated [...] Read more.
We investigated the evolutionary relationships between the taxa in the butterfly genus Iolana Bethune-Baker, 1914 and others in the subtribe Scolitantidina using information from nine DNA markers (COI-COII, ND1, ITS2, 28S, CAD, EF-1α, wg, and H3). We show that the genus Iolana originated about 10 mya in Central Asia and gradually expanded to the west to reach Europe about 5 mya. We then compared our inferred phylogeny with that of the Iolana larval host plants in the genus Colutea, reconstructed using three DNA markers (ITS, matK, and rpl32). Although the host plant phylogeny was weakly resolved, the close spatiotemporal correlation between Iolana butterflies and their larval hosts suggests that they may have co-evolved. Based on the molecular results and the morphology of male and female genitalia, we confirm nine species in the genus Iolana, which are distributed in allopatry from Europe and North Africa to Central Asia. We synonymize I. andreasi andreasi Sheljuzhko, 1919 (=I. andreasi khayyami Bernardi, 1964 syn. nov.) and I. iolas wullschlegeli Oberthür, 1914 (=I. iolas protogenes Fruhstorfer, 1917 syn. nov.). Full article
(This article belongs to the Special Issue Speciation, Phylogenetics and Taxonomy of Lepidoptera)
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12 pages, 878 KiB  
Article
Seasonal Variation in First Territory Settlement of Dispersing Golden Eagles: An Innate Behaviour?
by D. Philip Whitfield, Alan H. Fielding, David Anderson, Stuart Benn, Robin Reid, Ruth Tingay and Ewan D. Weston
Diversity 2024, 16(2), 82; https://doi.org/10.3390/d16020082 - 26 Jan 2024
Cited by 4 | Viewed by 1852
Abstract
Despite advancements through satellite telemetry, knowledge of the behaviour and ecology of large raptors during natal dispersal is still poor, even though this transience phase is important in understanding the population dynamics and conservation of these keystone species. After this phase, which can [...] Read more.
Despite advancements through satellite telemetry, knowledge of the behaviour and ecology of large raptors during natal dispersal is still poor, even though this transience phase is important in understanding the population dynamics and conservation of these keystone species. After this phase, which can take several years, the subsequent rapid transitional event on first territory settlement is less studied. It apparently occurs earlier without competition from existing territory occupants. The time of year when young large raptors settle on a territory has rarely been addressed empirically. Our study of seasonal timing of first settlement used data from 46 golden eagles GPS-tagged as nestlings in Scotland which were tracked to their first territory settlement, as adjudged by a robust algorithmic method. We show that when young golden eagles occupied their first territory, their settlements were uncommon in summer and most common in late winter/spring, but also occurred in autumn into early winter. The significant seasonal pattern was consistent, regardless of the probable prior occupancy status (vacant/occupied) of the settled territory (respectively, the likely absence or presence of defending territorial birds). This showed that seasonal territory settlement was unlikely to be related to any response from territory occupants. It infers further that seasonality in first territory settlement was underpinned by innate behaviours in dispersing eagles. Seasonal distribution of settlement dates was significantly different between sexes, with males more likely to settle in autumn, predominantly in prior vacant territories. We speculate on potential causative drivers behind our results and conclude that more research is clearly needed in this field of study. Full article
(This article belongs to the Special Issue Ecology and Conservation of the White-Tailed Eagle and Golden Eagle)
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22 pages, 7332 KiB  
Article
Reintroduction of the Extinct-in-the-Wild Spix’s Macaw (Cyanopsitta spixii) in the Caatinga Forest Domain of Brazil
by Cromwell Purchase, Camile Lugarini, Candice Purchase, Ariane Ferreira, Ugo Eichler Vercillo, Mark L. Stafford and Thomas H. White, Jr.
Diversity 2024, 16(2), 80; https://doi.org/10.3390/d16020080 - 26 Jan 2024
Cited by 4 | Viewed by 9711
Abstract
We describe efforts to reintroduce the extinct-in-the-wild Spix’s Macaw (Cyanopsitta spixii) within its historical range in eastern Brazil. Twenty captive-reared Spix’s Macaws were released, along with 15 Blue-Winged Macaws (Primolius maracana), as heterospecific flocks in two events during the [...] Read more.
We describe efforts to reintroduce the extinct-in-the-wild Spix’s Macaw (Cyanopsitta spixii) within its historical range in eastern Brazil. Twenty captive-reared Spix’s Macaws were released, along with 15 Blue-Winged Macaws (Primolius maracana), as heterospecific flocks in two events during the dry and rainy seasons of 2022. We monitored the release groups through daily observation and telemetry tracking from early June 2022 to early June 2023. We documented an overall first-year survival of 58.3% (CI: 37.8–78.7%), with 65% of Spix’s Macaws establishing a stable area of activity within 5 km of the release site, excluding any temporary long-distance forays. Eighty-five percent of released Spix’s Macaws exhibited flock cohesion, including interactions with and integration into wild Blue-Winged Macaw groups at the release site. Several released Spix’s Macaws formed pair-bonds with conspecifics and engaged in nest cavity exploration, breeding behavior, and territorial defense of nest sites, with three females also laying and incubating eggs. One nesting pair successfully hatched and reared chicks in an artificial nest cavity. These releases employed a novel reintroduction strategy using a surrogate species model, the sympatric Blue-Winged Macaw, to “mentor” and facilitate post-release adaptation by the target species and increase the total number of individuals in the release cohort. Lastly, participatory monitoring by local citizens is considered a way to engage and involve local communities in species and habitat conservation and potentially create new employment opportunities in the region. Full article
(This article belongs to the Special Issue Restoring and Conserving Biodiversity: A Global Perspective)
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15 pages, 5071 KiB  
Article
Assessment of Sessile Benthic Communities in Jeju Island, Republic of Korea, Using Autonomous Reef Monitoring Structures (ARMS)
by Kyeong-Tae Lee, Taihun Kim, Gun-Hoo Park, Chulhong Oh, Heung-Sik Park, Do-Hyung Kang, Hyun-Sil Kang and Hyun-Sung Yang
Diversity 2024, 16(2), 83; https://doi.org/10.3390/d16020083 - 26 Jan 2024
Cited by 2 | Viewed by 1920
Abstract
Assessing the effectiveness of artificial structures as a monitoring tool for benthic diversity in temperate reefs is crucial to determining their relevance in reef conservation and management. In this study, we utilized Autonomous Reef Monitoring Structures (ARMS) to evaluate sessile benthic communities that [...] Read more.
Assessing the effectiveness of artificial structures as a monitoring tool for benthic diversity in temperate reefs is crucial to determining their relevance in reef conservation and management. In this study, we utilized Autonomous Reef Monitoring Structures (ARMS) to evaluate sessile benthic communities that colonized ARMS units after 12 and 34 months of immersion within distinct habitats (coral-dominated and macroalgae-dominated habitats) in Jeju Island, Korea. We used two methods: image analysis of the ARMS plates and DNA metabarcoding of the ARMS units. We found significant differences in the sessile benthic community between the plate faces, installation periods, and habitats. DNA metabarcoding also revealed differences in sessile benthic diversity among habitats. Additionally, we identified the Lithophyllum genus within the crustose coralline algae community, whose dominance might trigger a transition to coral-dominated habitats in Jeju Island. We recommend integrating ARMS image analysis with DNA metabarcoding to enhance and complement studies focusing on benthic diversity. By utilizing ARMS, this study provides valuable information for understanding sessile benthic communities and biodiversity, contributing to an enhanced understanding of the responses of ecological communities to climate change. Full article
(This article belongs to the Special Issue Dynamics of Marine Communities)
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15 pages, 33597 KiB  
Article
Roadkill Patterns on Workdays, Weekends and Long Weekends: Anticipating the Implications of a Four-Day Work Week
by Linas Balčiauskas, Andrius Kučas and Laima Balčiauskienė
Diversity 2024, 16(2), 84; https://doi.org/10.3390/d16020084 - 26 Jan 2024
Cited by 1 | Viewed by 2149
Abstract
Understanding the spatial and temporal patterns of animal road mortality is important for planning protective measures and raising driver awareness. In our study of Lithuania, spanning from 2002 to 2022, we examined these patterns based on road types and categorized them by working [...] Read more.
Understanding the spatial and temporal patterns of animal road mortality is important for planning protective measures and raising driver awareness. In our study of Lithuania, spanning from 2002 to 2022, we examined these patterns based on road types and categorized them by working days, weekends, and long weekends, predicting the potential impact of transitioning to a four-day working week. We found that road type explains 22–50% of the variability in roadkill numbers for moose, red deer, wild boar, and roe deer. The highest occurrences were on main roads, while regional roads had the fewest incidents. The overall number of roadkills, especially those involving ungulates, was highest on weekends, followed by workdays, with the least on long weekends. However, these variations lacked statistical significance, and their effect size was small. We also observed a trend of increased roadkill numbers on the day before, the first day, notably on All Saints Day, or the last day of long weekends. In this context, with the introduction of a four-day work week, we are only expecting the highest roadkill numbers to move from Friday to Thursday. Full article
(This article belongs to the Special Issue Human-Wildlife Conflicts)
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12 pages, 1646 KiB  
Article
Diet Composition Explains Interannual Fluctuations in Reproductive Performance in a Lowland Golden Eagle Population
by Gunnar Sein and Ülo Väli
Diversity 2024, 16(1), 69; https://doi.org/10.3390/d16010069 - 20 Jan 2024
Cited by 1 | Viewed by 2114
Abstract
Food supply stands out as one of the most critical drivers of population demographics by limiting reproductive rates. In this study, we assessed fluctuations in diet composition and monitored various reproductive parameters over a nine-year period in a Golden Eagle population in an [...] Read more.
Food supply stands out as one of the most critical drivers of population demographics by limiting reproductive rates. In this study, we assessed fluctuations in diet composition and monitored various reproductive parameters over a nine-year period in a Golden Eagle population in an Eastern European peatland. The identification of 2439 prey specimens from 84 species revealed that the studied eagles primarily preyed upon birds (constituting 78.3% of prey numbers and 67.2% of prey biomass) and less on mammals (21.6% and 32.8%, respectively). Grouse emerged as the most important prey group (31% and 27%), followed by waterfowl (17%) and hares (8% and 14%). The most significant prey species, both in terms of numbers and weight, were the Black Grouse, Mountain Hare, Common Crane, and Capercaillie. The share of the Black Grouse decreased, while those of the White-fronted Goose, Roe Deer, and hares increased. The food niche, as measured by the Levins’ index, was broad (6.6), and it expanded during the study. On average, 58.3% of Golden Eagle pairs initiated breeding annually, with 69.1% successfully completing it, and 0.41 young per occupied territory were produced annually; there was pronounced interannual variation in reproductive performance. These fluctuations were associated with the shares of White-fronted Goose, Capercaillie, Mountain Hare and Roe Deer in the diet, suggesting that these species may be gaining increasing importance for the Golden Eagle, particularly following the decline of the Black Grouse. Full article
(This article belongs to the Special Issue Ecology and Conservation of the White-Tailed Eagle and Golden Eagle)
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22 pages, 5054 KiB  
Article
The Baget Karstic System and the Interstitial Environment of Lachein, a Hotspot of Subterranean Biodiversity in the Pyrenees (France)
by Franck Bréhier, Danielle Defaye, Arnaud Faille and Anne Bedos
Diversity 2024, 16(1), 62; https://doi.org/10.3390/d16010062 - 18 Jan 2024
Cited by 1 | Viewed by 1517
Abstract
Located in Lestelas-Balaguères massif, central northern Pyrenees, France, the Baget catchment covers 13.25 km2 and is highly karstified: so far, more than 80 caves have been recorded. The main outlet of the system, the exsurgence de Las Hountas, has an average flow [...] Read more.
Located in Lestelas-Balaguères massif, central northern Pyrenees, France, the Baget catchment covers 13.25 km2 and is highly karstified: so far, more than 80 caves have been recorded. The main outlet of the system, the exsurgence de Las Hountas, has an average flow of 550 L/s. Downstream, it is connected with the hyporheic of the Lachein stream. The Baget system, formed by both the karstic system and the hyporheic, has been intensively investigated by cave biologists and is known to be a hotspot for subterranean biodiversity. The synthesis provided here lists no less than 17 troglobionts and 40 stygobionts, with 3 single site endemics, making the Baget system the richest subterranean hotspot in the Pyrenees. This is notably due to the diversity of subterranean habitats and to the comprehensive knowledge of the stygofauna, likely unmatched at the European scale. Considering the significant speleological findings of the last 15 years that have not been yet biologically investigated, we can expect new discoveries, especially for the troglofauna. Full article
(This article belongs to the Special Issue Hotspots of Subterranean Biodiversity—2nd Volume)
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