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Biomolecules

Biomolecules is an international, peer-reviewed, open access journal on structures and functions of bioactive and biogenic substances, molecular mechanisms with biological and medical implications as well as biomaterials and their applications, published monthly online by MDPI.

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All Articles (13,793)

  • Article
  • Open Access

Myxobacteria are prolific producers of structurally diverse secondary metabolites and represent a valuable source of anticancer lead compounds. In this study, quinaldic acid (QA) was putatively annotated from a myxobacterial metabolite extract by LC–MS/MS spectral matching and evaluated for its antitumor activity against non-small cell lung cancer (NSCLC) cells. QA inhibited the viability of four tumor cell lines in a concentration-dependent manner, with A549 lung adenocarcinoma cells displaying the highest sensitivity, with an IC50 of 1.07 mM after 24 h of treatment. QA also significantly suppressed clonogenic growth in A549 cells. Network pharmacology analysis suggested that QA may regulate NSCLC-related targets and pathways involved in cell-cycle control, apoptosis, p53, JAK–STAT, and NF-κB signaling. Experimental validation showed that QA induced S-phase accumulation in A549 cells, increasing the S-phase population by 14.70 percentage points at 4 mM. This effect was accompanied by increased cyclin A1 expression and decreased cyclin B1 and CDK1 expression. QA also promoted apoptosis in a concentration-dependent manner, increasing the apoptotic population by 40.40 percentage points at 2 mM. Apoptosis was associated with elevated BAX and caspase-3 expression and reduced BCL-2 expression. These findings suggest that QA suppresses A549 cell growth by inducing S-Phase accumulation and apoptosis, supporting its potential as a myxobacteria-derived anticancer scaffold.

Biomolecules

23 October 2026

Identification of strain E51 and inhibitory activity of its metabolite crude extract. (A) Colony morphology; (B) morphology of the fruiting bodies of strain E51; (C) phylogenetic tree constructed based on 16S rRNA gene sequences; and (D) inhibitory activity of the crude extract from strain E51.
  • Article
  • Open Access

The Potential Roles of Omega Fatty Acids, Inflammation and Pre-miR-29c in Diabetic Nephropathy

  • Destan Kalaçay,
  • Hüseyin Kayadibi and
  • Aysun Hacışevki
  • + 6 authors

Diabetic nephropathy (DN) is associated with inflammatory dysregulation and altered lipid mediators. We investigated inflammatory markers, fatty acids, and plasma pre-miR-29c in controls and type 2 diabetes mellitus (T2DM) patients stratified by albuminuria severity. This cross-sectional study included 120 T2DM patients (albumin-to-creatinine ratio, ACR: <30, 30–300, and >300 mg/g; n = 40 each) and 40 controls. TNF-α, IL-6, and lipoxin A4 (LXA4) were measured by ELISA; EPA, DHA, AA, and DGLA by LC–MS/MS; and plasma pre-miR-29c by semi-quantitative endpoint RT-PCR. TNF-α was higher in all T2DM groups compared with controls. LXA4 was lower in the ACR <30 and >300 mg/g groups, while IL-6 showed no significant difference. Compared with controls, EPA was lower in both albuminuric groups, DHA was lower, and AA was higher in all T2DM groups, while DGLA remained unchanged. Plasma pre-miR-29c increased with albuminuria severity and correlated strongly with the ACR (ρ = 0.852; FDR-adjusted p < 0.001). In the final Firth model, log2-transformed pre-miR-29c was the only variable that remained statistically associated with DN (OR = 170.692, 95% CI: 22.319–23,827.669; p < 0.001); the wide confidence interval reflects near-complete separation. These exploratory findings suggest that pre-miR-29c may serve as a candidate marker of albuminuria severity, requiring confirmation by quantitative PCR with validated normalisation in longitudinal cohorts.

Biomolecules

23 October 2026

Relative plasma pre-miR-29c expression across study groups. Normo, T2DM with normoalbuminuria; Micro, T2DM with microalbuminuria; Macro, T2DM with macroalbuminuria. Boxes show the median and interquartile range, whiskers extend to 1.5 × IQR, and individual data points are overlaid (n = 40 per group). Expression is given as the pre-miR-29c/U6 band density ratio from semi-quantitative endpoint RT-PCR. Groups were compared using the Kruskal–Wallis test (H(3) = 135.38, p &lt; 0.001) followed by Dunn’s test with Bonferroni adjustment. n.s., not significant; *** p &lt; 0.001 versus control.
  • Article
  • Open Access

Vitamin D deficiency (VDD) is highly prevalent worldwide and has been associated with chronic inflammatory and cardiovascular diseases (CVD). However, its relationship with coordinated inflammatory and cardiometabolic networks remains unclear. We studied 1075 participants classified as VDD (25(OH)D < 25 nmol/L; n = 304) or in the ≥25 nmol/L group (n = 771) based on circulating 25(OH)D levels. Body composition and plasma levels of IL-17, IL-34, activin A, follistatin, and FSTL1 were assessed; the follistatin/FSTL1 ratio (FOFS) and C-reactive protein–triglyceride–glucose index (CTI) were calculated. Detectable IL-17 and IL-34 concentrations were available for 195 and 247 participants, respectively. VDD participants exhibited higher levels of inflammatory biomarkers and a higher prevalence of hypertension (HTN), hyperlipidemia (HLD), and CVD. Multivariable analysis revealed a particularly strong independent association between IL-17 and VDD (OR = 8.36, 95% CI: 3.72–18.80). Structural equation modeling (SEM) supported an interconnected inflammatory–cardiometabolic association network, characterized by a strong association between VDD and IL-17 (β = 0.689) and significant interrelationships among IL-17, IL-34, FOFS, CTI, and cardiometabolic comorbidities. These findings identify IL-17 as a prominent inflammatory correlate of VDD and suggest that FOFS may represent a link between inflammatory activation and cardiometabolic morbidity associated with VDD.

Biomolecules

23 October 2026

Participant flow diagram and classification according to vitamin D status.
  • Article
  • Open Access

Astragalus polysaccharides (APS) have potential as functional feed additives, but their effects on physiological and intestinal responses in geese remain incompletely characterized. A total of 432 one-day-old Taihu goslings were assigned to diets containing 0, 100, or 200 mg/kg APS, with six replicates per treatment and 24 geese per replicate. Organ indices, serum biochemical and intestinal barrier-related parameters, and intestinal length were evaluated using six independent experimental replicates per treatment (n = 6), whereas intestinal histomorphology and cecal microbiota were assessed using four biological replicates per treatment (n = 4) at each sampling age. Samples were collected at 30, 60, and 90 d, with intestinal metabolites analyzed using four biological replicates per treatment (n = 4) and jejunal mucosal metabolic indicators evaluated using six experimental replicates per treatment (n = 6) at 90 d. Compared with the control, 200 mg/kg APS increased thymus index at 30 d, serum superoxide dismutase activity at 30 and 60 d (p = 0.038 and 0.020, respectively), and jejunal and ileal villus height at 30, 60, and 90 d. APS reduced serum diamine oxidase activity at 30 d (p = 0.001), and the 200 mg/kg group remained lower at 90 d. Cecal microbial community structure differed among treatments at 30 and 60 d (PERMANOVA p = 0.047 and 0.006, respectively), whereas Shannon diversity was unchanged. At 90 d, APS altered jejunal and cecal organic acid profiles with selected responses remaining significant after Benjamini–Hochberg false discovery rate correction (q < 0.05) and increased jejunal mucosal citric acid content at 200 mg/kg. APS affected selected physiological and intestinal outcomes, with additional changes in cecal microbial community structure and intestinal metabolism, while 200 mg/kg produced the clearest changes in serum superoxide dismutase activity and intestinal morphology.

Biomolecules

23 October 2026

Effects of APS on Intestinal Tissue Morphology of Taihu Geese. (A) Villus height, crypt depth, and villus height-to-crypt depth ratio in the jejunum at 30, 60, and 90 days. (B) Villus height, crypt depth, and villus height-to-crypt depth ratio in the ileum at 30, 60, and 90 days. Data are presented as mean ± SEM (n = 4 biological replicates per treatment). Pairwise comparisons were performed using Tukey’s honestly significant difference (HSD) test following one-way ANOVA at each sampling age. Asterisks indicate significant pairwise differences between the connected groups (* p &lt; 0.05, ** p &lt; 0.01, and *** p &lt; 0.001).

Featured Articles of Last Quarter

Three-dimensional structural representations of molecular biosystems central to neurodegenerative diseases: (a) amyloid-β peptide, associated with extracellular plaque formation in AD, and (b) α-Synuclein fibrils forming the core of Lewy bodies in PD and related synucleinopathies. The fibrillar conformations shown illustrate the β-sheet–rich architectures that promote aggregation, seeding, and neurotoxicity. Structures were obtained from the RCSB Protein Data Bank (https://www.rcsb.org/3d-view/1IYT/0 and https://www.rcsb.org/3d-view/2N0A/0, respectively, both accessed on 11 December 2025).
NTD-ganglioside-induced conformational change in the Spike trimer. The three subunits of the Spike trimer are colored cyan, yellow, and purple. Each NTD is located at the periphery of the trimer. Following the binding of one NTD to a lipid raft enriched in gangliosides, a conformational change propagates throughout the involved subunit (the one in cyan in this example) until it reaches the neighboring subunit (colored yellow). Areas of the NTD whose conformation has been modified after interaction with the raft are indicated in red. Note that the conformational rearrangements affect distant domains of the NTD, including the contact zone with the neighboring subunit. This triggers the unmasking of the RBD of the yellow subunit, now able to bind the ACE-2 receptor. Overall, this process is functionally reminiscent of interfacial activation [60]. Trimeric structures in the closed pre-fusion conformation were constructed with Swiss-PdbViewer [61] by homology with a reference model (pdb: 6VSB) [62]. ACE2 and the spike trimer in the open conformation were from pdb 7DK3 [37]. Protein structures were generated with Molegro Molecular Viewer 2.5 (MMV, http://molexus.io/molegro-molecular-viewer/ accessed on 3 March 2025).
Methyltransferases (writers) and methylases (erasers) regulate cellular m6A levels. Different readers recognize m6A methylations and direct RNAs to various pathways.

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Biomolecules - ISSN 2218-273X