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  • Article
  • Open Access
32 Citations
5,781 Views
15 Pages

Cultivable Endophytic Bacteria in Seeds of Dongxiang Wild Rice and Their Role in Plant-Growth Promotion

  • Zhibin Zhang,
  • Tingting Liu,
  • Xiao Zhang,
  • Jing Xie,
  • Ya Wang,
  • Riming Yan,
  • Yumei Jiang and
  • Du Zhu

12 December 2021

Dongxiang wild rice (Oryza rufipogon Griff.) germplasm is a precious resource for the improvement of agronomic traits in rice. Rice seeds also harbor a diverse endophytic bacterial community, and their interactions with their hosts and each other can...

(This article belongs to the Section Microbial Diversity and Culture Collections)
  • Article
  • Open Access
2 Citations
3,486 Views
15 Pages

Mapping and Candidate Gene Prediction of qPL7-25: A Panicle Length QTL in Dongxiang Wild Rice

  • Sanfeng Li,
  • Yuchun Rao,
  • Penggen Duan,
  • Zhonghao Wang,
  • Ping Hu,
  • Ruoqian Yu,
  • Chenxi Luo,
  • Mengna Tang,
  • Caolin Lu and
  • Yijian Mao
  • + 1 author

Panicle length (PL) is an important trait closely related to rice yield. More than 200 quantitative trait loci (QTL) for PL have been identified, but only a few can be used for breeding. Dongxiang wild rice contains many excellent genes, and mining f...

(This article belongs to the Special Issue Germplasm Resources Exploration and Genetic Breeding of Crops)
  • Article
  • Open Access
5 Citations
2,282 Views
19 Pages

Combined Analysis of Transcriptome and Metabolome Reveals the Heat Stress Resistance of Dongxiang Wild Rice at Seedling Stage

  • Peng Zhang,
  • Haipeng Yu,
  • Zengying Huang,
  • Pengfei Yang,
  • Huijuan Li,
  • Guanrong Huang,
  • Lu Tang,
  • Zhengzheng Zhong,
  • Guocheng Hu and
  • Hanhua Tong
  • + 1 author

11 April 2025

Rice is sensitive to high temperatures at the seedling stage. In the present study, a combined analysis of transcriptome and metabolome was performed on a heat-resistant accession, DY80, from Dongxiang wild rice and a heat-sensitive variety, R974, un...

(This article belongs to the Section Crop Physiology and Crop Production)
  • Article
  • Open Access
633 Views
16 Pages

Identification and Validation of qSTS5, a QTL Associated with Salt Tolerance at Seedling Stage in Dongxiang Wild Rice

  • Yi-Jie Yan,
  • Yu-Jun Zhu,
  • Zhen-Hua Zhang,
  • Ling Wang,
  • Feng-Li Zhao,
  • Yu-Song Lyu,
  • Gao-Neng Shao,
  • Li-Hong Xie,
  • Gui-Ai Jiao and
  • Shao-Qing Tang
  • + 4 authors

29 April 2026

Soil salinization severely restricts rice growth and global grain production, posing a serious threat to food security. Dongxiang wild rice serves as an important genetic resource for improving salt tolerance in rice. In this study, a backcross inbre...

(This article belongs to the Section Plant Science)
  • Article
  • Open Access
9 Citations
3,546 Views
13 Pages

The DUF26 domain-containing protein is an extracellular structural protein, which plays an important role in signal transduction. Dongxiang wild rice (Oryza rufipogon Griff.) is the northern-most common wild rice in China. Using domain analysis, 85 D...

(This article belongs to the Special Issue Genetic Sight: Plant Traits during Postharvest)
  • Article
  • Open Access
4 Citations
2,944 Views
15 Pages

Genetic Diversity and Population Differentiation of Dongxiang Wild Rice (Oryza rufipogon Griff.) Based on SNP Markers

  • Yuanyuan Nie,
  • Guihua Hou,
  • Hui Xia,
  • Lei Wang,
  • Jianguo Lei,
  • Hong Chen,
  • Liang Chen and
  • Lijun Luo

2 December 2022

Dongxiang wild rice (DXWR) is one of the most valuable germplasm resources of rice. It is important to conserve the genetic diversity and uncover the population differentiation of DXWR. In this study, we analyzed the genetic diversity and population...

(This article belongs to the Special Issue Discovery and Utilization of Germplasm Resources in Rice)
  • Article
  • Open Access
9 Citations
2,872 Views
14 Pages

Combination of Genomics, Transcriptomics Identifies Candidate Loci Related to Cold Tolerance in Dongxiang Wild Rice

  • Dianwen Wang,
  • Yulong Xiao,
  • Hongping Chen,
  • Cheng Huang,
  • Ping Chen,
  • Dazhou Chen,
  • Wei Deng and
  • Jilin Wang

6 September 2022

Rice, a cold-sensitive crop, is a staple food for more than 50% of the world’s population. Low temperature severely compromises the growth of rice and challenges China’s food safety. Dongxiang wild rice (DXWR) is the most northerly common...

(This article belongs to the Special Issue Regulation of Crop Quality and Stress Responses)
  • Article
  • Open Access
1 Citations
1,688 Views
17 Pages

Identification of Submergence Tolerance Loci in Dongxiang Wild Rice (DXWR) by Genetic Linkage and Transcriptome Analyses

  • Jilin Wang,
  • Cheng Huang,
  • Lijuan Tang,
  • Hongping Chen,
  • Ping Chen,
  • Dazhou Chen and
  • Dianwen Wang

20 February 2025

The submergence tolerance of rice is a key factor in promoting rice direct seeding technology and resisting flood disasters. Dongxiang wild rice (DXWR) has strong submergence tolerance, but its genetic basis is still unclear. Here, we report quantita...

(This article belongs to the Special Issue Understanding the Genetics of Complex Traits in Plants: Association Analysis and Genomic Selection Methods)
  • Feature Paper
  • Article
  • Open Access
10 Citations
4,189 Views
18 Pages

4 January 2022

Phosphorus (P) deficiency tolerance in rice is a complex character controlled by polygenes. Through proteomics analysis, we could find more low P tolerance related proteins in unique P-deficiency tolerance germplasm Dongxiang wild rice (Oryza Rufipog...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
4 Citations
2,506 Views
16 Pages

2 October 2023

The improvement of grain yield, quality, and resistance can be achieved through the utilization of heterosis. The combination of cytoplasmic male sterility (CMS) and fertility restoration (Rf) gene(s) greatly facilitates the commercial development of...

(This article belongs to the Section Molecular Plant Sciences)
  • Article
  • Open Access
1 Citations
1,986 Views
19 Pages

10 October 2025

Dongxiang wild rice (DXWR, Oryza rufipogon Griff.), the northernmost known wild rice species, exhibits exceptional tolerance to combined low-temperature and anaerobic stress during seed germination, providing a unique model for understanding plant ad...

(This article belongs to the Special Issue Genetic and Genomic Strategies for Enhancing Seed Quality and Grain Nutrition in Cereal Crops)
  • Article
  • Open Access
6 Citations
3,188 Views
13 Pages

Genome-Wide Identification and Analysis of OsSPXs Revealed Its Genetic Influence on Cold Tolerance of Dongxiang Wild Rice (DXWR)

  • Cheng Huang,
  • Jilin Wang,
  • Dianwen Wang,
  • Jingjing Chang,
  • Hongping Chen,
  • Dazhou Chen,
  • Wei Deng and
  • Chunjie Tian

SPX-domain proteins (small proteins with only the SPX domain) have been proven to be involved in phosphate-related signal transduction and regulation pathways. Except for OsSPX1 research showing that it plays a role in the process of rice adaptation...

(This article belongs to the Collection Feature Papers in Molecular Plant Sciences)
  • Communication
  • Open Access
7 Citations
3,286 Views
9 Pages

QTL Mapping of Mesocotyl Elongation and Confirmation of a QTL in Dongxiang Common Wild Rice in China

  • Qian Huang,
  • Chunyan Ju,
  • Yibing Cheng,
  • Di Cui,
  • Bing Han,
  • Zhengwu Zhao,
  • Xiaoding Ma and
  • Longzhi Han

29 July 2022

Direct-seeded rice (DSR) cultivation is an effective and important way to resolve agricultural labor scarcity, water scarcity and high production cost issues. Mesocotyl elongation (ME) is the main driver of the rapid emergence of rice seedlings from...

(This article belongs to the Special Issue Discovery and Utilization of Germplasm Resources in Rice)
  • Article
  • Open Access
10 Citations
3,644 Views
12 Pages

Identification, Analysis, and Confirmation of Seed Storability-Related Loci in Dongxiang Wild Rice (Oryza rufipogon Griff.)

  • Minmin Zhao,
  • Biaolin Hu,
  • Yuanwei Fan,
  • Gumu Ding,
  • Wanling Yang,
  • Yong Chen,
  • Yanhong Chen,
  • Jiankun Xie and
  • Fantao Zhang

19 November 2021

Dongxiang wild rice (Oryza rufipogon Griff.) (DXWR) has strong seed storability and identifying its elite gene resources may facilitate genetic improvements in rice seed storability. In this study, we developed two backcross inbred lines (BILs) popul...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
11 Citations
2,886 Views
17 Pages

25 September 2023

Cold and salt stresses are major environmental factors that constrain rice production. Understanding their mechanisms is important to enhance cold and salt stress tolerance in rice. MicroRNAs (miRNAs) are a class of non-coding RNAs with only 21&ndash...

(This article belongs to the Special Issue Power Up Plant Genetic Research with Genomic Data 2.0)
  • Article
  • Open Access
9 Citations
3,513 Views
14 Pages

Genome-Wide Analysis of microRNAs and Their Target Genes in Dongxiang Wild Rice (Oryza rufipogon Griff.) Responding to Salt Stress

  • Yong Chen,
  • Wanling Yang,
  • Rifang Gao,
  • Yaling Chen,
  • Yi Zhou,
  • Jiankun Xie and
  • Fantao Zhang

17 February 2023

Rice (Oryza sativa) is a staple food for more than half of the world’s population, and its production is critical for global food security. Moreover, rice yield decreases when exposed to abiotic stresses, such as salinity, which is one of the m...

(This article belongs to the Special Issue Abiotic Stresses in Plants: From Molecules to Environment)
  • Article
  • Open Access
16 Citations
4,577 Views
11 Pages

24 March 2021

Three new helvolic acid derivatives (named sarocladilactone A (1), sarocladilactone B (2) and sarocladic acid A (3a)), together with five known compounds (6,16-diacetoxy-25-hy- droxy-3,7-dioxy-29-nordammara-1,17(20)-dien-21-oic acid (3b), helvolic ac...

(This article belongs to the Section Natural Products Chemistry)
  • Article
  • Open Access
18 Citations
6,678 Views
18 Pages

A Wild Rice Rhizobacterium Burkholderia cepacia BRDJ Enhances Nitrogen Use Efficiency in Rice

  • Zheng Li,
  • Ahmed R. Henawy,
  • Asmaa A. Halema,
  • Qiuling Fan,
  • Deqiang Duanmu and
  • Renliang Huang

15 September 2022

Rice domestication has dramatically improved its agronomic traits, albeit with unavoidable significantly reduced genetic diversity. Dongxiang common wild rice, the wild rice species distributed in northernmost China, exhibits excellent resistance aga...

(This article belongs to the Special Issue Nitrogen with Plant Growth and Development)
  • Article
  • Open Access
9 Citations
3,711 Views
12 Pages

22 April 2022

Dongxiang wild rice (DXWR) (O. rufipogon Griff.), which has the northernmost worldwide distribution of a wild rice species, is a valuable genetic resource with respect to improving stress tolerance in cultivated rice (Oryza sativa L.). In the three-l...

(This article belongs to the Topic Plant Domestication and Crop Evolution)
  • Article
  • Open Access
2 Citations
2,934 Views
14 Pages

RNA-Seq Transcriptome Analysis and Evolution of OsEBS, a Gene Involved in Enhanced Spikelet Number per Panicle in Rice

  • Fuan Niu,
  • Mingyu Liu,
  • Shiqing Dong,
  • Xianxin Dong,
  • Ying Wang,
  • Can Cheng,
  • Huangwei Chu,
  • Zejun Hu,
  • Fuying Ma and
  • Xiaojin Luo
  • + 13 authors

Spikelet number per panicle (SNP) is one of the most important yield components in rice. Rice ENHANCING BIOMASS AND SPIKELET NUMBER (OsEBS), a gene involved in improved SNP and yield, has been cloned from an accession of Dongxiang wild rice. However,...

(This article belongs to the Special Issue Discovery of Gene Functions in Crops by Genome Editing and Genomics)
  • Article
  • Open Access
877 Views
13 Pages

14 January 2026

Endophytic FoRo54 was isolated from the roots of Oryza rufipogon (Dongxiang wild rice) collected in China. Based on morphological characteristics and phylogenetic analysis of the 16S rRNA gene sequence, strain FoRo54 was identified as closely related...

(This article belongs to the Section Bioorganic Chemistry)
  • Article
  • Open Access
1 Citations
1,139 Views
20 Pages

The endophytic Streptomyces sp. PRh3 (PRh3), isolated from Dongxiang wild rice (DXWR), exhibited impaired biosynthetic capacity in the laboratory. To address this defect, rifampicin-based ribosome engineering was first applied to PRh3 to generate PRh...

(This article belongs to the Special Issue Microbial Biotechnological Application for Metabolite Bioprocesses)