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36 Results Found

  • Article
  • Open Access
8 Citations
4,756 Views
10 Pages

Molecular Diversity of Tidal Swamp Rice (Oryza sativa L.) in South Kalimantan, Indonesia

  • Dindin H. Mursyidin,
  • Purnomo Purnomo,
  • Issirep Sumardi and
  • Budi S. Daryono

9 April 2018

Tidal swamp rice has long been cultivated by the local people of the South Kalimantan, Indonesia. This germplasm possess some important traits for adapted to a wide range of abiotic and biotic stresses. In this study, a total of 16 cultivars of the t...

  • Article
  • Open Access
25 Citations
5,188 Views
15 Pages

15 January 2021

There is growing attention given to gene flow between crops and the wild relatives as global landscapes have been rapidly converted into agricultural farm fields over the past century. Crop-to-wild introgression may advance the extinction risks of ra...

  • Article
  • Open Access
2,184 Views
12 Pages

Hatchery-Imposed Selection Does Not Impact the Genetic Diversity of Australian Farmed Blue Mussels (Mytilus spp.)

  • Georgina Bramwell,
  • Emi S. Ab Rahim,
  • Aaron G. Schultz,
  • Antoine M. Dujon,
  • Kim Weston,
  • Brett A. Ingram,
  • Sam Jahangard,
  • Frédéric Thomas,
  • Beata Ujvari and
  • Craig D. H. Sherman

Australian blue mussels (Mytilus spp.) are an increasingly important sustainable product of the Australian aquaculture industry. Although important for commercial fisheries, aquaculture may have adverse environmental and ecological impacts. This stud...

  • Article
  • Open Access
1 Citations
1,525 Views
13 Pages

New Insights into Genetic Diversity and Differentiation of 11 Buffalo Populations Using Validated SNPs for Dairy Improvement

  • Alfredo Pauciullo,
  • Giustino Gaspa,
  • Carmine Versace,
  • Gianfranco Cosenza,
  • Nadia Piscopo,
  • Meichao Gu,
  • Angelo Coletta,
  • Tanveer Hussain,
  • Alireza Seidavi and
  • Yi Zhang
  • + 6 authors

30 March 2025

Background/Objectives: Buffalo populations exhibit distinct genetic variations influenced by domestication history, geographic distribution, and selection pressures. This study investigates the genetic structure and differentiation of 11 buffalo popu...

  • Review
  • Open Access
83 Citations
16,567 Views
26 Pages

24 December 2021

Hybridization, defined as breeding between two distinct taxonomic units, can have an important effect on the evolutionary patterns in cross-breeding taxa. Although interspecific hybridization has frequently been considered as a maladaptive process, w...

  • Article
  • Open Access
22 Citations
7,888 Views
22 Pages

16 August 2021

Genetic rescue can reduce the extinction risk of inbred populations, but it has the poorly understood risk of ‘genetic swamping’—the replacement of the distinctive variation of the target population. We applied population viability analysis (PVA) to...

  • Article
  • Open Access
11 Citations
3,215 Views
14 Pages

21 June 2022

The red swamp crayfish (Procambarus clarkii) is an important aquatic animal and has developed as a popular aquaculture species in China. In this study, a total of 72,839 SSR motifs were identified from transcriptional data, and 20 microsatellite mark...

  • Article
  • Open Access
13 Citations
3,703 Views
16 Pages

Population Ecology and Genetic Diversity of the Invasive Alien Species Procambarus clarkii in Lake Trasimeno (Italy)

  • Ambrosius Josef Martin Dörr,
  • Melissa Scoparo,
  • Irene Cardinali,
  • Gianandrea La Porta,
  • Barbara Caldaroni,
  • Gabriele Magara,
  • Matteo Pallottini,
  • Roberta Selvaggi,
  • Beniamino Cenci-Goga and
  • Antonia Concetta Elia
  • + 3 authors

18 October 2021

The deliberate or accidental introduction of invasive alien species (IAS) causes negative ecological and economic impacts altering ecosystem processes, imperiling native species and causing damage to human endeavors. A monthly monitoring program was...

  • Article
  • Open Access
3 Citations
2,412 Views
11 Pages

An Analysis of DNA Sequence Polymorphism in the Swamp Buffalo Toll-like Receptor (TLR2) Gene

  • Wootichai Kenchaiwong,
  • Pongphol Pongthaisong,
  • Srinuan Kananit,
  • Monchai Duangjinda and
  • Wuttigrai Boonkum

16 June 2023

Toll-like receptors (TLRs) are transmembrane proteins important for directing immune responses. Their primary role is to recognize pathogens based on single-nucleotide polymorphism (SNP) characteristics. TLR2 is categorized as a pattern recognition r...

  • Article
  • Open Access
20 Citations
4,066 Views
19 Pages

Empirical Evaluation and Prediction of Protein Requirements for Maintenance and Growth of 18–24 Months Old Thai Swamp Buffaloes

  • Siwaporn Paengkoum,
  • Pattaraporn Tatsapong,
  • Nittaya Taethaisong,
  • Thongpea Sorasak,
  • Rayudika Aprilia Patindra Purba and
  • Pramote Paengkoum

14 May 2021

In some geographical areas and in certain breeding situations, the interpretation of increased gain in the bovine is difficult to investigate. Due to their inherent genetic variations, their energy and protein needs vary as a function of inherent gen...

  • Article
  • Open Access
1 Citations
1,320 Views
19 Pages

Integrating Genomic Selection and Genome-Wide Association Study to Enhance Reproductive Traits in Thai Swamp Buffalo

  • Rawinan Lomngam,
  • Vibuntita Chankitisakul,
  • Monchai Duangjinda,
  • Wootichai Kenchaiwong,
  • Kecha Kuha,
  • Kritsanathon Sintala,
  • Kulphat Pothikanit and
  • Wuttigrai Boonkum

8 August 2025

Reproductive inefficiencies, such as delayed age at first calving (AFC) and a prolonged calving interval (CI), hinder the productivity of Thai swamp buffaloes. This study aimed to improve the genetic evaluation of these traits by integrating genomic...

  • Article
  • Open Access
2 Citations
2,088 Views
15 Pages

Construction of the Red Swamp Crayfish (Procambarus clarkii) Family Selection Population and Whole Genome Sequencing to Screen WIPFI Candidate Genes Related to Growth

  • Xing Tian,
  • Xiudan Yuan,
  • Zhigang He,
  • Weiguo Li,
  • Jinlong Li,
  • Yong He,
  • Shiming Deng,
  • Jiarong Guo,
  • Miaoquan Fang and
  • Dongwu Wang

31 January 2025

Background/Objectives: Procambarus clarkii is an important freshwater aquaculture species in China which has the characteristics of rich nutrition and delicious taste. However, the expansion of aquaculture scale, germplasm degradation, and other...

  • Article
  • Open Access
11 Citations
3,663 Views
19 Pages

Dissecting Taxonomic Variants within Ulmus spp. Complex in Natural Forests with the Aid of Microsatellite and Morphometric Markers

  • Sigitas Tamošaitis,
  • Girmantė Jurkšienė,
  • Raimundas Petrokas,
  • Jurata Buchovska,
  • Ilona Kavaliauskienė,
  • Darius Danusevičius and
  • Virgilijus Baliuckas

21 May 2021

Spontaneous hybrids between the native elms (genus Ulmus L.) have been observed in the forests of Europe. Gene conservation raises questions regarding the genetic background for the complex morphology and taxonomy of elms. Our objective was to dissec...

  • Article
  • Open Access
15 Citations
5,758 Views
25 Pages

Mitochondrial Introgression, Color Pattern Variation, and Severe Demographic Bottlenecks in Three Species of Malagasy Poison Frogs, Genus Mantella

  • Angelica Crottini,
  • Pablo Orozco-terWengel,
  • Falitiana C. E. Rabemananjara,
  • J. Susanne Hauswaldt and
  • Miguel Vences

23 April 2019

Madagascar is a biodiversity hotspot particularly rich in amphibian diversity and only a few charismatic Malagasy amphibians have been investigated for their population-level differentiation. The Mantella madagascariensis group is composed of two rai...

  • Article
  • Open Access
8 Citations
3,192 Views
7 Pages

Copy Number Variations of Four Y-Linked Genes in Swamp Buffaloes

  • Ting Sun,
  • Quratulain Hanif,
  • Hong Chen,
  • Chuzhao Lei and
  • Ruihua Dang

22 December 2019

Copy number variation (CNV), a significant source of genetic diversity in the mammalian Y chromosome, is associated with the development of many complex phenotypes, such as spermatogenesis and male fertility. The contribution of Y-linked CNVs has bee...

  • Article
  • Open Access
7 Citations
3,125 Views
11 Pages

10 September 2021

The organic anion transporter (OAT) family is the subfamily of the solute carrier (SLC) superfamily, which plays a vital role in regulating essential nutrients in milk. However, little is known about the members’ identification, evolutionary basis, a...

  • Article
  • Open Access
7 Citations
2,926 Views
6 Pages

Mitogenome Diversity and Maternal Origins of Guangxi Buffalo Breeds

  • Ting Sun,
  • Guangyun Huang,
  • Junli Sun,
  • Zihao Wang,
  • Shaohua Teng,
  • Yanhong Cao,
  • Quratulain Hanif,
  • Ningbo Chen,
  • Chuzhao Lei and
  • Yuying Liao

25 March 2020

Guangxi Province, in the southwest of China, is one of the putative migratory corridors or domestication centers for swamp buffalo. In this study, we investigated the evolutionary status of two Guangxi native buffalo breeds (Fuzhong buffalo, n = 15;...

  • Review
  • Open Access
52 Citations
8,575 Views
20 Pages

22 March 2021

The buffalo was domesticated around 3000–6000 years ago and has substantial economic significance as a meat, dairy, and draught animal. The buffalo has remained underutilized in terms of the development of a well-annotated and assembled reference gen...

  • Feature Paper
  • Article
  • Open Access
4 Citations
2,559 Views
18 Pages

13 January 2021

The strongyloid nematodes belonging to the subfamily Phascolostrongylinae occur primarily in the large intestines of macropodid and vombatid marsupials. Current molecular evidence suggests that the two nematode species, Macropostrongyloides dissimili...

  • Article
  • Open Access
12 Citations
3,159 Views
15 Pages

Genetic Diversity Analysis of the Red Swamp Crayfish Procambarus clarkii in Three Cultured Populations Based on Microsatellite Markers

  • Jiaqing Liu,
  • Yunfei Sun,
  • Qianqian Chen,
  • Miaomiao Wang,
  • Qin Li,
  • Wenzong Zhou and
  • Yongxu Cheng

5 June 2023

With the increasing scale of crayfish breeding, the self-propagation and “catch large and keep small” breeding patterns have led to serious degradation of the fry, so the selection and breeding of high-quality fry is very important. Selec...

  • Article
  • Open Access
2 Citations
1,785 Views
13 Pages

Possible Shifts in the Genetic Diversity of Red-crowned Cranes (Grus japonensis) in Hokkaido, Japan: Indications of Continental Gene Flow

  • Wenjing Dong,
  • Kai Tomita,
  • Akira Sawada,
  • Makoto Hasebe,
  • Masako Inoue,
  • Kunikazu Momose,
  • Tatsuro Nakamura and
  • Hiroki Teraoka

30 May 2024

Red-crowned cranes (Grus japonensis) consist of two distinct groups: the continental population and the island population. The island population, localized in Hokkaido, Japan, exhibits very low genetic diversity due to its rapid recovery from the bri...

  • Article
  • Open Access
656 Views
15 Pages

Development of a 5K Liquid-Phase Genome-Wide Breeding Chip for Xinglong Buffalo

  • Yuqing Jiao,
  • Junming Jiang,
  • Shiyuan Li,
  • Taoyu Chen,
  • Xinjun Qiu,
  • Ke Cui,
  • Boling Li,
  • Si Chen,
  • Qiaoling Chen and
  • Hongyan Gao
  • + 4 authors

15 September 2025

The Xinglong buffalo is a local swamp buffalo breed adapted to tropical regions in China. To facilitate the protection and utilization of valuable genetic resources, we first developed the breed-specific single nucleotide polymorphism (SNP) liquid-ph...

  • Article
  • Open Access
3 Citations
3,062 Views
11 Pages

28 June 2022

Big-head Schizothoracin (Aspiorhynchus laticeps) and Tarim Schizothoracin (Schizothorax biddulphi) are locally sympatric in the Tarim River Basin. Although another Schizothoracin (Schizothorax esocinus) in Tarim River basin has been speculated to be...

  • Article
  • Open Access
4 Citations
2,925 Views
13 Pages

Phylogenetic Diversity of the Red Swamp Crayfish Procambarus clarkii and Its Dispersal Pattern in Northern and Central Italy

  • Melissa Scoparo,
  • Irene Cardinali,
  • Gianandrea La Porta,
  • Barbara Caldaroni,
  • Gabriele Magara,
  • Ambrosius Josef Martin Dörr,
  • Antonia Concetta Elia and
  • Hovirag Lancioni

15 February 2023

The red swamp crayfish Procambarus clarkii is one of the most threatening freshwater species in the world. The aim of this study is to provide a better understanding of the phylogeography and the invasion routes of P. clarkii populations in the Itali...

  • Article
  • Open Access
586 Views
13 Pages

Distance Matters: Assessing the Influence of Spatial Separation on Reproductive Success of Costus spiralis (Costaceae) in a Vereda Palm Swamp

  • Jessyca Santana Santos,
  • Rafaela Cabral Marinho,
  • Clesnan Mendes-Rodrigues,
  • Monize Altomare and
  • Paulo Eugênio Oliveira

26 October 2025

Many plant species depend on pollen flow to maximize reproduction and maintain genetic variability. Pollinators mediate this process, but distance between individuals can influence its benefits. Proximity may cause inbreeding depression, while extrem...

  • Article
  • Open Access
4 Citations
4,892 Views
27 Pages

Small-sized ferruginous micronodules or pisolith nodules, frequently occurring in inland freshwater systems in moderate climate zones, are important indicators of groundwater level changes and early diagenetic processes, especially within the Pleisto...

  • Review
  • Open Access
4 Citations
3,121 Views
28 Pages

Geogas-Carried Metal Prospecting for Concealed Ore Deposits: A Review of Case Studies in China

  • Qiang Wang,
  • Xueqiu Wang,
  • Zhizhong Cheng,
  • Bimin Zhang,
  • Zezhong Du,
  • Taotao Yan,
  • Huixiang Yuan,
  • Xiaolei Li,
  • Yu Qiao and
  • Hanliang Liu

16 December 2023

Geogas-carried metal prospecting, an integral part of deep-penetrating geochemistry, is potentially effective in the geochemical exploration of concealed ore deposits. However, its principles and applicability remain controversial. This study summari...

  • Article
  • Open Access
1 Citations
2,416 Views
14 Pages

Diagnostics and Description of a New Subspecies of Calluna vulgaris (L.) Hull from Western Siberia

  • Olga Cherepanova,
  • Irina Petrova,
  • Stanislav Sannikov and
  • Yulia Mishchihina

The article presents the results of the study of fifty populations of common heather (Calluna vulgaris (L.) Hull) collected throughout its range. A phased comparative analysis (genetic, biochemical, anatomical, morphological, and ecological) was carr...

  • Article
  • Open Access
28 Citations
6,733 Views
17 Pages

Inferring Invasion History of Red Swamp Crayfish (Procambarus clarkii) in China from Mitochondrial Control Region and Nuclear Intron Sequences

  • Yanhe Li,
  • Xianwu Guo,
  • Liping Chen,
  • Xiaohui Bai,
  • Xinlan Wei,
  • Xiaoyun Zhou,
  • Songqian Huang and
  • Weimin Wang

29 June 2015

Identifying the dispersal pathways of an invasive species is useful for adopting the appropriate strategies to prevent and control its spread. However, these processes are exceedingly complex. So, it is necessary to apply new technology and collect r...

  • Article
  • Open Access
1 Citations
1,578 Views
16 Pages

Mitochondrial Genomes of Distant Fish Hybrids Reveal Maternal Inheritance Patterns and Phylogenetic Relationships

  • Shixi Chen,
  • Fardous Mohammad Safiul Azam,
  • Li Ao,
  • Chanchun Lin,
  • Jiahao Wang,
  • Rui Li and
  • Yuanchao Zou

24 July 2025

As distant hybridization has profound implications for evolutionary biology, aquaculture, and biodiversity conservation, this study aims to elucidate patterns of maternal inheritance, genetic divergence, and phylogenetic relationships by synthesizing...

  • Article
  • Open Access
5 Citations
2,728 Views
14 Pages

16 February 2023

As one of the main fossil fuels globally, coal can be enriched with a variety of critical metal elements in specific geological conditions. This paper investigates the mineral compositions and concentrations of major and minor element oxides and trac...

  • Article
  • Open Access
12 Citations
7,155 Views
15 Pages

Evolution of the Degenerated Y-Chromosome of the Swamp Guppy, Micropoecilia picta

  • Indrajit Nanda,
  • Susanne Schories,
  • Ivan Simeonov,
  • Mateus Contar Adolfi,
  • Kang Du,
  • Claus Steinlein,
  • Manfred Alsheimer,
  • Thomas Haaf and
  • Manfred Schartl

25 March 2022

The conspicuous colour sexual dimorphism of guppies has made them paradigmatic study objects for sex-linked traits and sex chromosome evolution. Both the X- and Y-chromosomes of the common guppy (Poecilia reticulata) are genetically active and homomo...

  • Article
  • Open Access
322 Views
22 Pages

21 November 2025

Coal-free zones, particularly scouring zones, reduce recoverable reserves and increase water inrush risk in coal mining. Existing sedimentological, geophysical, and geostatistical methods are often constrained by coring conditions, lithological inter...

  • Article
  • Open Access
185 Views
23 Pages

The Lower-Middle Jurassic Xishanyao Formation in the Nileke Sag of the Yili Basin contains substantial reserves of coal and coalbed methane (CBM). Elucidating its depositional evolution and the controlling factors of coal accumulation within a sequen...

  • Article
  • Open Access
10 Citations
4,787 Views
15 Pages

Molecular Epidemiology of SARS-CoV-2 in Diverse Environmental Samples Globally

  • Ariful Islam,
  • Md. Abu Sayeed,
  • Md. Abul Kalam,
  • Jinnat Ferdous,
  • Md. Kaisar Rahman,
  • Josefina Abedin,
  • Shariful Islam,
  • Shahanaj Shano,
  • Otun Saha and
  • Mohammad Mahmudul Hassan
  • + 1 author

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has swamped the global environment greatly in the current pandemic. Wastewater-based epidemiology (WBE) effectively forecasts the surge of COVID-19 cases in humans in a particular regio...

  • Feature Paper
  • Article
  • Open Access
7 Citations
4,204 Views
26 Pages

5 May 2022

Coastal areas are particularly vulnerable to flooding from heavy rainfall, sea storm surge, or a combination of the two. Recent studies project higher intensity and frequency of heavy rains, and progressive sea level rise continuing over the next dec...