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25 Results Found

  • Review
  • Open Access
11 Citations
9,210 Views
24 Pages

Epigenetic mechanisms, including DNA and histone modifications, are pivotal for normal brain development and functions by modulating spatial and temporal gene expression. Dysregulation of the epigenetic machinery can serve as a causal role in numerou...

  • Article
  • Open Access
1,676 Views
17 Pages

12 September 2025

During tissue differentiation, gene expression patterns are committed to the epigenetic cellular memory machinery, including Polycomb and Trithorax groups (PcG and TrxG), which label chromatin with repressive or active histone marks. Histone marks re...

(This article belongs to the Section Biological Factors)
  • Review
  • Open Access
6 Citations
4,671 Views
24 Pages

A Green Light to Switch on Genes: Revisiting Trithorax on Plants

  • Diego Ornelas-Ayala,
  • Carlos Cortés-Quiñones,
  • José Olvera-Herrera,
  • Berenice García-Ponce and ,
  • Adriana Garay-Arroyo,
  • Elena R. Álvarez-Buylla and
  • Maria de la Paz Sanchez
  • + 2 authors+ 0 author

23 December 2022

The Trithorax Group (TrxG) is a highly conserved multiprotein activation complex, initially defined by its antagonistic activity with the PcG repressor complex. TrxG regulates transcriptional activation by the deposition of H3K4me3 and H3K36me3 marks...

(This article belongs to the Section Plant Development and Morphogenesis)
  • Review
  • Open Access
133 Citations
13,273 Views
23 Pages

Structure and Function of SET and MYND Domain-Containing Proteins

  • Nicholas Spellmon,
  • Joshua Holcomb,
  • Laura Trescott,
  • Nualpun Sirinupong and
  • Zhe Yang

8 January 2015

SET (Suppressor of variegation, Enhancer of Zeste, Trithorax) and MYND (Myeloid-Nervy-DEAF1) domain-containing proteins (SMYD) have been found to methylate a variety of histone and non-histone targets which contribute to their various roles in cell r...

(This article belongs to the Special Issue Protein Crystallography in Molecular Biology 2015)
  • Review
  • Open Access
8 Citations
6,198 Views
16 Pages

29 September 2021

Drosophila melanogaster has played a paramount role in epigenetics, the study of changes in gene function inherited through mitosis or meiosis that are not due to changes in the DNA sequence. By analyzing simple phenotypes, such as the bristle positi...

(This article belongs to the Special Issue Epigenetics in Insects)
  • Review
  • Open Access
4 Citations
3,274 Views
19 Pages

Polycomb Recruiters Inside and Outside of the Repressed Domains

  • Maksim Erokhin,
  • Vladic Mogila,
  • Dmitry Lomaev and
  • Darya Chetverina

The establishment and stable inheritance of individual patterns of gene expression in different cell types are required for the development of multicellular organisms. The important epigenetic regulators are the Polycomb group (PcG) and Trithorax gro...

(This article belongs to the Special Issue Molecular Genetics of Drosophila Development)
  • Review
  • Open Access
31 Citations
7,158 Views
26 Pages

25 March 2022

Epigenetic regulation of gene expression is crucial to the determination of cell fate in development and differentiation, and the Polycomb (PcG) and Trithorax (TrxG) groups of proteins, acting antagonistically as complexes, play a major role in this...

(This article belongs to the Special Issue 10th Anniversary of Cells—Advances in Cellular Immunology)
  • Article
  • Open Access
2 Citations
1,128 Views
18 Pages

Pan-Genomic Analysis and Functional Characterization of the ATXR Gene Family Highlights Its Role in Regulating Agronomic Traits in Rapeseed

  • Songze Wu,
  • Minghao Zhang,
  • Ruicheng Hu,
  • Di Niu and ,
  • Boyu Meng,
  • Haikun Yang,
  • Yuling Chen,
  • Yonghai Fan and
  • Kun Lu
  • + 4 authors+ 0 author

10 May 2026

Histone methyltransferases of the Trithorax-related (ATXR) family act as critical epigenetic regulators in plants. However, systematic characterization of this gene family remains limited in the economically important oilseed crop Brassica napus. In...

(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
  • Article
  • Open Access
7 Citations
3,275 Views
12 Pages

5 January 2024

Histone post-translational modifications (PTMs) represent a key mechanism in the thermal adaptation of the honeybee Apis mellifera. In this study, a chromatin immunoprecipitation assay and qPCR were employed to explore the changes in the methylation...

  • Feature Paper
  • Review
  • Open Access
10 Citations
4,745 Views
28 Pages

Congenital Heart Diseases: Recent Insights into Epigenetic Mechanisms

  • José Manuel Rodríguez-Pérez,
  • Diego B. Ortega-Zhindón,
  • Clara Villamil-Castañeda,
  • Javier Santiago Lara-Ortiz and ,
  • Verónica Marusa Borgonio-Cuadra,
  • Jorge L. Cervantes-Salazar,
  • Juan Calderón-Colmenero,
  • Zeomara Nathali Escalante-Ruiz,
  • Eduardo Retama-Méndez and
  • Nonanzit Pérez-Hernández
  • + 6 authors+ 1 author

31 May 2025

Congenital Heart Diseases (CHDs) are a heterogeneous group of structural abnormalities affecting the heart and major arteries, which are present in at least 1% of births worldwide. Studies have linked CHD to both genetic and environmental factors. In...

(This article belongs to the Section Cells of the Cardiovascular System)
  • Article
  • Open Access
6 Citations
2,483 Views
12 Pages

Impacts of Hyperglycemia on Epigenetic Modifications in Human Gingival Fibroblasts and Gingiva in Diabetic Rats

  • Kento Kojima,
  • Nobuhisa Nakamura,
  • Airi Hayashi,
  • Shun Kondo and ,
  • Megumi Miyabe,
  • Takeshi Kikuchi,
  • Noritaka Sawada,
  • Tomokazu Saiki,
  • Tomomi Minato and
  • Keiko Naruse
  • + 8 authors+ 3 authors

12 October 2024

Periodontal disease is considered one of the diabetic complications with high morbidity and severity. Recent studies demonstrated the involvement of the epigenome on diabetic complications. Histone modifications change chromatin architecture and gene...

(This article belongs to the Section Molecular Endocrinology and Metabolism)
  • Review
  • Open Access
9 Citations
7,915 Views
9 Pages

30 August 2012

In this review, we focus on how inhibitors of Hsp90 can help prevent the resistance to anti-cancer drugs by synergistically increasing their cancer killing abilities and thereby allowing them to function at much lower concentrations than normally use...

(This article belongs to the Special Issue Hsp90 Inhibitors)
  • Article
  • Open Access
3 Citations
1,673 Views
21 Pages

GhASHH1.A and GhASHH2.A Improve Tolerance to High and Low Temperatures and Accelerate the Flowering Response to Temperature in Upland Cotton (Gossypium hirsutum)

  • Jisheng Ju,
  • Junning Yang,
  • Jiazhi Wei,
  • Wenmin Yuan and ,
  • Ying Li,
  • Dandan Li,
  • Pingjie Ling,
  • Qi Ma,
  • Caixiang Wang and
  • Junji Su
  • + 6 authors+ 1 author

21 October 2024

The trithorax group (TrxG) complex is an important protein in the regulation of plant histone methylation. The ABSENT, SMALL, OR HOMEOTIC DISCS 1 (ASH1) gene family, as important family members of the TrxG complex, has been shown to regulate toleranc...

(This article belongs to the Section Molecular Plant Sciences)
  • Article
  • Open Access
38 Citations
17,074 Views
32 Pages

Dynamics of H3K4me3 Chromatin Marks Prevails over H3K27me3 for Gene Regulation during Flower Morphogenesis in Arabidopsis thaliana

  • Julia Engelhorn,
  • Robert Blanvillain,
  • Christian Kröner,
  • Hugues Parrinello and ,
  • Marine Rohmer,
  • David Posé,
  • Felix Ott,
  • Markus Schmid and
  • Cristel C. Carles
  • + 4 authors+ 0 author

Plant life-long organogenesis involves sequential, time and tissue specific expression of developmental genes. This requires activities of Polycomb Group (PcG) and trithorax Group complexes (trxG), respectively responsible for repressive Histone 3 tr...

(This article belongs to the Special Issue Plant Epigenome Dynamics)
  • Review
  • Open Access
69 Citations
13,026 Views
46 Pages

Multifaceted Role of PRDM Proteins in Human Cancer

  • Amelia Casamassimi,
  • Monica Rienzo,
  • Erika Di Zazzo,
  • Anna Sorrentino and ,
  • Donatella Fiore,
  • Maria Chiara Proto,
  • Bruno Moncharmont,
  • Patrizia Gazzerro,
  • Maurizio Bifulco and
  • Ciro Abbondanza
  • + 5 authors+ 0 author

The PR/SET domain family (PRDM) comprise a family of genes whose protein products share a conserved N-terminal PR [PRDI-BF1 (positive regulatory domain I-binding factor 1) and RIZ1 (retinoblastoma protein-interacting zinc finger gene 1)] homologous d...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Review
  • Open Access
102 Citations
13,722 Views
14 Pages

18 January 2019

DNA methylation, catalyzed by DNA methyltransferases (DNMTs), is an epigenetic mark that needs to be faithfully replicated during mitosis in order to maintain cell phenotype during successive cell divisions. This epigenetic mark is located on the 5&p...

(This article belongs to the Special Issue Role of DNA Methyltransferases in the Epigenome)
  • Article
  • Open Access
1 Citations
1,478 Views
20 Pages

18 August 2025

The Complex Proteins Associated with Set1 (COMPASS)-like complex regulates developmental gene expression via histone 3 lysine 4 (H3K4) methylation and other transcriptional mechanisms. Several members of the lysine methyltransferase 2C and D (KMT2C/D...

(This article belongs to the Special Issue Drosophila: A Versatile Model in Biology and Medicine—2nd Edition)
  • Article
  • Open Access
10 Citations
11,443 Views
21 Pages

Steric Clash in the SET Domain of Histone Methyltransferase NSD1 as a Cause of Sotos Syndrome and Its Genetic Heterogeneity in a Brazilian Cohort

  • Kyungsoo Ha,
  • Priya Anand,
  • Jennifer A. Lee,
  • Julie R. Jones and ,
  • Chong Ae Kim,
  • Debora Romeo Bertola,
  • Jonathan D. J. Labonne,
  • Lawrence C. Layman,
  • Wolfgang Wenzel and
  • Hyung-Goo Kim
  • + 5 authors+ 0 author

9 November 2016

Most histone methyltransferases (HMTase) harbor a predicted Su(var)3–9, Enhancer-of-zeste, Trithorax (SET) domain, which transfers a methyl group to a lysine residue in their substrates. Mutations of the SET domains were reported to cause intellectua...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
4 Citations
4,478 Views
14 Pages

GAGA Regulates Border Cell Migration in Drosophila

  • Anna A. Ogienko,
  • Lyubov A. Yarinich,
  • Elena V. Fedorova,
  • Natalya V. Dorogova and ,
  • Sergey I. Bayborodin,
  • Elina M. Baricheva and
  • Alexey V. Pindyurin
  • + 2 authors+ 0 author

10 October 2020

Collective cell migration is a complex process that happens during normal development of many multicellular organisms, as well as during oncological transformations. In Drosophila oogenesis, a small set of follicle cells originally located at the ant...

(This article belongs to the Special Issue Cell Adhesion and Migration in Health and Diseases)
  • Article
  • Open Access
12 Citations
4,472 Views
24 Pages

Unique SMYD5 Structure Revealed by AlphaFold Correlates with Its Functional Divergence

  • Yingxue Zhang,
  • Eid Alshammari,
  • Jacob Sobota,
  • Alexander Yang and ,
  • Chunying Li and
  • Zhe Yang
  • + 1 author+ 0 author

SMYD5 belongs to a special class of protein lysine methyltransferases with an MYND (Myeloid-Nervy-DEAF1) domain inserted into a SET (Suppressor of variegation, Enhancer of Zeste, Trithorax) domain. Despite recent advances in its functional characteri...

  • Article
  • Open Access
10 Citations
4,764 Views
13 Pages

Drosophila O-GlcNAcase Mutants Reveal an Expanded Glycoproteome and Novel Growth and Longevity Phenotypes

  • Ilhan Akan,
  • Adnan Halim,
  • Sergey Y. Vakhrushev,
  • Henrik Clausen and
  • John A. Hanover

27 April 2021

The reversible posttranslational O-GlcNAc modification of serine or threonine residues of intracellular proteins is involved in many cellular events from signaling cascades to epigenetic and transcriptional regulation. O-GlcNAcylation is a conserved...

(This article belongs to the Special Issue Glycosylation and Deglycosylation in Animal Development)
  • Article
  • Open Access
45 Citations
6,356 Views
17 Pages

PR/SET Domain Family and Cancer: Novel Insights from The Cancer Genome Atlas

  • Anna Sorrentino,
  • Antonio Federico,
  • Monica Rienzo,
  • Patrizia Gazzerro and ,
  • Maurizio Bifulco,
  • Alfredo Ciccodicola,
  • Amelia Casamassimi and
  • Ciro Abbondanza
  • + 3 authors+ 0 author

19 October 2018

The PR/SET domain gene family (PRDM) encodes 19 different transcription factors that share a subtype of the SET domain [Su(var)3-9, enhancer-of-zeste and trithorax] known as the PRDF1-RIZ (PR) homology domain. This domain, with its potential methyltr...

(This article belongs to the Special Issue Transcriptional Regulation: Molecules, Involved Mechanisms and Misregulation)
  • Review
  • Open Access
23 Citations
8,069 Views
26 Pages

Targeting Epigenetic Changes Mediated by Members of the SMYD Family of Lysine Methyltransferases

  • Alyssa Padilla,
  • John F. Manganaro,
  • Lydia Huesgen,
  • Deborah A. Roess and ,
  • Mark A. Brown and
  • Debbie C. Crans
  • + 1 author+ 0 author

20 February 2023

A comprehensive understanding of the mechanisms involved in epigenetic changes in gene expression is essential to the clinical management of diseases linked to the SMYD family of lysine methyltransferases. The five known SMYD enzymes catalyze the tra...

(This article belongs to the Special Issue Exploring Bioactive Organic Compounds for Drug Discovery)
  • Article
  • Open Access
2 Citations
2,738 Views
15 Pages

19 August 2025

Female gametogenesis is orchestrated by dynamic epigenetic modifications. In mammals, SETDB1, a histone H3K9 methyltransferase, is required for proper meiotic progression and early embryonic development. In Drosophila, the ortholog of SETDB1 plays a...

  • Review
  • Open Access
1,107 Views
23 Pages

Epigenome Editing for Cannabinoid Yield: Targets, Tools, and Priorities in Cannabis sativa

  • S. M. Ahsan,
  • Sanjida Sultana Keya,
  • Md. Injamum-Ul-Hoque,
  • Nayan Chandra Howlader and ,
  • Md. Rakib Hasan,
  • Md Azizul Haque,
  • Hossain Uddin Shekhar,
  • Hyong Woo Choi and
  • Md. Mezanur Rahman
  • + 4 authors+ 0 author

Cannabinoid content can vary several-fold across Cannabis sativa L. cultivars that carry functional, closely related CBDA synthase (CBDAS) and THCA synthase (THCAS) alleles, a difference that coding-sequence variation among functional alleles does no...

(This article belongs to the Special Issue Plant Epigenetic Memory Under Abiotic Stress)