Cells, Volume 11, Issue 21
2022 November-1 - 194 articles
Cover Story: To investigate cellular and molecular changes in hPSC-derived developing early retinal organoids, we generated SIX6-GFP and VSX2-tdTomato (or VSX2-h2b-mRuby3) dual fluorescent reporters. These 3D organoids expressed GFP at day 15 and tdTomato (or mRuby3) at day 25, respectively. This enabled us to explore transcriptional- and chromatin-related changes using RNA-seq and ATAC-seq, from pluripotency through to early retina specification. Correlating gene transcription with chromatin accessibility in early eye field development showed that retinal cells underwent a clear change in the chromatin landscape, as well as gene expression profiles. Pathway analysis revealed a stepwise loss of pluripotency, while optic vesicle and retina pathways became progressively more prevalent. Considering both datasets in parallel provided an informative glimpse into the molecular nature of eye development. View this paper - Issues are regarded as officially published after their release is announced to the table of contents alert mailing list .
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