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1,510 Results Found

  • Review
  • Open Access
9 Citations
7,331 Views
19 Pages

Transcription of the mitochondrial genome is essential for the maintenance of oxidative phosphorylation (OXPHOS) and other functions directly related to this unique genome. Considerable evidence suggests that mitochondrial transcription is dysregulat...

  • Article
  • Open Access
30 Citations
6,364 Views
19 Pages

TOMM40 RNA Transcription in Alzheimer’s Disease Brain and Its Implication in Mitochondrial Dysfunction

  • Eun-Gyung Lee,
  • Sunny Chen,
  • Lesley Leong,
  • Jessica Tulloch and
  • Chang-En Yu

6 June 2021

Increasing evidence suggests that the Translocase of Outer Mitochondria Membrane 40 (TOMM40) gene may contribute to the risk of Alzheimer’s disease (AD). Currently, there is no consensus as to whether TOMM40 expression is up- or down-regulated in AD...

  • Review
  • Open Access
1,041 Views
20 Pages

Transcription, Maturation and Degradation of Mitochondrial RNA: Implications for Innate Immune Response

  • Chaojun Yan,
  • Jianglong Yu,
  • Hao Lyu,
  • Shuai Xiao,
  • Dong Guo,
  • Qi Zhang,
  • Rui Zhang,
  • Jingfeng Tang,
  • Zhiyin Song and
  • Cefan Zhou

28 September 2025

Mitochondria are crucial for a wide range of cellular processes. One of the most important is innate immunity regulation. Apart from functioning as a signaling hub in immune reactions, mitochondrial nucleic acids can themselves act as damage-associat...

  • Review
  • Open Access
27 Citations
13,077 Views
29 Pages

28 January 2022

In response to exercise, the oxidative capacity of mitochondria within skeletal muscle increases through the coordinated expression of mitochondrial proteins in a process termed mitochondrial biogenesis. Controlling the expression of mitochondrial pr...

  • Article
  • Open Access
6 Citations
3,157 Views
11 Pages

15 January 2023

Coridius chinensis (Hemiptera: Dinidoridae) is a medicinal insect. Its mitochondrial gene arrangement is consistent with that of Drosophila melanogaster and Erthesina fullo, the two insects with well-studied mitochondrial transcription. To investigat...

  • Article
  • Open Access
1,849 Views
24 Pages

Profiling Reduced Expression of Contractile and Mitochondrial mRNAs in the Human Sinoatrial Node vs. Right Atrium and Predicting Their Suppressed Expression by Transcription Factors and/or microRNAs

  • Weixuan Chen,
  • Abimbola J. Aminu,
  • Zeyuan Yin,
  • Irem Karaesmen,
  • Andrew J. Atkinson,
  • Marcin Kuniewicz,
  • Mateusz Holda,
  • Jerzy Walocha,
  • Filip Perde and
  • Peter Molenaar
  • + 1 author

27 September 2024

(1) Background: The sinus node (SN) is the main pacemaker of the heart. It is characterized by pacemaker cells that lack mitochondria and contractile elements. We investigated the possibility that transcription factors (TFs) and microRNAs (miRs) pres...

  • Article
  • Open Access
6 Citations
2,396 Views
14 Pages

Mitochondrial transcription factor A (TFAM) is one of the widely studied but still incompletely understood mitochondrial protein, which plays a crucial role in the maintenance and transcription of mitochondrial DNA (mtDNA). The available experimental...

  • Review
  • Open Access
61 Citations
15,966 Views
23 Pages

Although the large majority of mitochondrial proteins are nuclear encoded, for their correct functioning mitochondria require the expression of 13 proteins, two rRNA, and 22 tRNA codified by mitochondrial DNA (mtDNA). Once transcribed, mitochondrial...

  • Article
  • Open Access
756 Views
23 Pages

24 September 2025

Mitochondria possess their own genome, which encodes subunits of the electron transport chain, rendering mitochondrial protein translation essential for cellular energy metabolism. Mitochondrial dysfunction affects nuclear transcription through the r...

  • Review
  • Open Access
22 Citations
9,777 Views
20 Pages

29 January 2013

Transcriptional regulation of genes involved in fatty acid metabolism is considered the major long-term regulatory mechanism controlling lipid homeostasis. By means of this mechanism, transcription factors, nutrients, hormones and epigenetics control...

  • Article
  • Open Access
6 Citations
6,113 Views
17 Pages

Inhibitors of Rho/MRTF/SRF Transcription Pathway Regulate Mitochondrial Function

  • Pankaj Patyal,
  • Xiaomin Zhang,
  • Ambika Verma,
  • Gohar Azhar and
  • Jeanne Y. Wei

24 February 2024

RhoA-regulated gene transcription by serum response factor (SRF) and its transcriptional cofactor myocardin-related transcription factors (MRTFs) signaling pathway has emerged as a promising therapeutic target for pharmacological intervention in mult...

  • Article
  • Open Access
825 Views
22 Pages

Light-Induced Transcription in Zebrafish Targets Mitochondrial Function and Heme Metabolism

  • Alessandra Boiti,
  • Hanna T. Weber,
  • Yuhang Hong,
  • Rima Siauciunaite,
  • Sebastian G. Gornik,
  • Nicholas S. Foulkes and
  • Daniela Vallone

23 September 2025

In fish cells, light exposure elevates levels of reactive oxygen species (ROS) and stress-activated MAP kinase activity and thereby induces gene transcription. However, we lack a complete understanding of the function and evolution of this regulatory...

  • Review
  • Open Access
29 Citations
10,550 Views
15 Pages

Mitochondrial Transcription Factor A and Mitochondrial Genome as Molecular Targets for Cisplatin-Based Cancer Chemotherapy

  • Kimitoshi Kohno,
  • Ke-Yong Wang,
  • Mayu Takahashi,
  • Tomoko Kurita,
  • Yoichiro Yoshida,
  • Masakazu Hirakawa,
  • Yoshikazu Harada,
  • Akihiro Kuma,
  • Hiroto Izumi and
  • Shinji Matsumoto

20 August 2015

Mitochondria are important cellular organelles that function as control centers of the energy supply for highly proliferative cancer cells and regulate apoptosis after cancer chemotherapy. Cisplatin is one of the most important chemotherapeutic agent...

  • Review
  • Open Access
11 Citations
6,744 Views
14 Pages

14 February 2023

Human mitochondrial DNA (mtDNA) is a 16.9 kbp double-stranded, circular DNA, encoding subunits of the oxidative phosphorylation electron transfer chain and essential RNAs for mitochondrial protein translation. The minimal human mtDNA replisome is com...

  • Article
  • Open Access
5 Citations
3,741 Views
18 Pages

Cell Stress Induces Mislocalization of Transcription Factors with Mitochondrial Enrichment

  • Chiara Rossi,
  • Anna Fernàndez,
  • Pascual Torres,
  • Omar Ramirez-Nuñez,
  • Ana Belén Granado-Serrano,
  • Laia Fontdevila,
  • Mònica Povedano,
  • Reinald Pamplona,
  • Isidro Ferrer and
  • Manuel Portero-Otin

17 August 2021

Previous evidence links the formation of extranuclear inclusions of transcription factors, such as ERK, Jun, TDP-43, and REST, with oxidative, endoplasmic-reticulum, proteasomal, and osmotic stress. To further characterize its extranuclear location,...

  • Feature Paper
  • Review
  • Open Access
23 Citations
5,313 Views
13 Pages

15 August 2021

Mitochondria have a plethora of functions in eukaryotic cells, including cell signaling, programmed cell death, protein cofactor synthesis, and various aspects of metabolism. The organelles carry their own genomic DNA, which encodes transfer and ribo...

  • Article
  • Open Access
13 Citations
3,228 Views
16 Pages

20 September 2022

A limited number of antifungal drugs, the side-effect of clinical drugs and the emergence of resistance create an urgent need for new antifungal treatment agents. High-throughput drug screening and in-depth drug action mechanism analyzation are neede...

  • Article
  • Open Access
44 Citations
7,534 Views
10 Pages

Early Exercise Affects Mitochondrial Transcription Factors Expression after Cerebral Ischemia in Rats

  • Qi Zhang,
  • Yi Wu,
  • Hongying Sha,
  • Pengyue Zhang,
  • Jie Jia,
  • Yongshan Hu and
  • Jianhong Zhu

6 February 2012

Increasing evidence shows that exercise training is neuroprotective after stroke, but the underlying mechanisms are unknown. To clarify this critical issue, the current study investigated the effects of early treadmill exercise on the expression of m...

  • Article
  • Open Access
8 Citations
2,924 Views
12 Pages

Role of Transcription Factor EB in Mitochondrial Dysfunction of Cisplatin-Induced Acute Kidney Injury

  • Shujun Wang,
  • Yanse Chen,
  • Hongluan Wu,
  • Xiaoyu Li,
  • Haiyan Xiao,
  • Qingjun Pan and
  • Hua-Feng Liu

3 February 2023

Cisplatin, a widely used anticancer agent, can cause nephrotoxicity, including both acute kidney injury (AKI) and chronic kidney diseases, by accumulating in renal tubular epithelial cells (TECs). Mitochondrial pathology plays an important role in th...

  • Review
  • Open Access
44 Citations
9,054 Views
31 Pages

9 February 2021

Substantial evidence indicates that mitochondrial impairment contributes to neuronal dysfunction and vulnerability in disease states, leading investigators to propose that the enhancement of mitochondrial function should be considered a strategy for...

  • Article
  • Open Access
8 Citations
4,084 Views
12 Pages

2 February 2021

In plants, mTERF proteins are primarily found in mitochondria and chloroplasts. Studies have identified several mTERF proteins that affect plant development, respond to abiotic stresses, and regulate organellar gene expression, but the functions and...

  • Article
  • Open Access
18 Citations
5,333 Views
15 Pages

Plasticity of Mitochondrial DNA Inheritance and Its Impact on Nuclear Gene Transcription in Yeast Hybrids

  • Sarah K. Hewitt,
  • Kobchai Duangrattanalert,
  • Tim Burgis,
  • Leo A.H. Zeef,
  • Samina Naseeb and
  • Daniela Delneri

Mitochondrial DNA (mtDNA) in yeast is biparentally inherited, but colonies rapidly lose one type of parental mtDNA, thus becoming homoplasmic. Therefore, hybrids between the yeast species possess two homologous nuclear genomes, but only one type of m...

  • Article
  • Open Access
15 Citations
3,378 Views
13 Pages

Mitochondrial transcription factor A (TFAM) regulates mitochondrial biogenesis, and it is a candidate target for sensitizing tumor during therapy. Previous studies identified that increased TFAM expression conferred tumor cells resistance to ionizing...

  • Communication
  • Open Access
1 Citations
2,319 Views
11 Pages

Assessing the Role of Post-Translational Modifications of Mitochondrial RNA Polymerase

  • Karlie R. Platz,
  • Emma J. Rudisel,
  • Katelynn V. Paluch,
  • Taylor R. Laurin and
  • Kristin E. Dittenhafer-Reed

7 November 2023

The mitochondrial proteome is subject to abundant post-translational modifications, including lysine acetylation and phosphorylation of serine, threonine, and tyrosine. The biological function of the majority of these protein modifications is unknown...

  • Article
  • Open Access
30 Citations
4,493 Views
22 Pages

14 January 2022

Age is one of the major risk factors for the development of chronic pathologies, including kidney diseases. Oxidative stress and mitochondrial dysfunction play a pathogenic role in aging kidney disease. Transcription factor NRF2, a master regulator o...

  • Review
  • Open Access
59 Citations
11,774 Views
25 Pages

19 December 2019

Mitochondria are peculiar organelles whose proper function depends on the crosstalk between two genomes, mitochondrial and nuclear. The human mitochondrial genome (mtDNA) encodes only 13 proteins; nevertheless, its proper expression is essential for...

  • Article
  • Open Access
9 Citations
2,563 Views
19 Pages

How Does Mitochondrial Protein-Coding Gene Expression in Fejervarya kawamurai (Anura: Dicroglossidae) Respond to Extreme Temperatures?

  • Jing-Yan Wang,
  • Li-Hua Zhang,
  • Yue-Huan Hong,
  • Ling-Na Cai,
  • Kenneth B. Storey,
  • Jia-Yong Zhang,
  • Shu-Sheng Zhang and
  • Dan-Na Yu

25 September 2023

Unusual climates can lead to extreme temperatures. Fejervarya kawamurai, one of the most prevalent anurans in the paddy fields of tropical and subtropical regions in Asia, is sensitive to climate change. The present study focuses primarily on a singl...

  • Review
  • Open Access
34 Citations
5,490 Views
16 Pages

29 October 2022

Neurons critically depend on mitochondria for ATP production and Ca2+ buffering. They are highly compartmentalized cells and therefore a finely tuned mitochondrial network constantly adapting to the local requirements is necessary. For neuronal maint...

  • Article
  • Open Access
316 Views
21 Pages

Role of Acetaldehyde and Dysregulated Mitophagic Lysosomal Processing in Chronic-Binge Ethanol-Induced Liver Injury

  • Devadoss J. Samuvel,
  • Emory Foerster,
  • Li Li,
  • Amir K. Richardson,
  • Patrick M. Wooster,
  • John J. Lemasters and
  • Zhi Zhong

29 November 2025

Chronic binge drinking is common among patients with alcohol-associated steatohepatitis. Therefore, we tested the hypothesis that chronic binge ethanol exposure disrupts mitophagic processing and stimulates release of mitochondrial damage-associated...

  • Article
  • Open Access
7 Citations
2,782 Views
18 Pages

Mitochondrial biogenesis is tightly regulated in response to extracellular and intracellular signals, thereby adapting yeast cells to changes in their environment. The Hap2/3/4/5 complex is a master transcriptional regulator of mitochondrial biogenes...

  • Article
  • Open Access
18 Citations
3,994 Views
19 Pages

Genome-Wide Identification and Characterization of the Mitochondrial Transcription Termination Factors (mTERFs) in Capsicum annuum L.

  • Bingqian Tang,
  • Lingling Xie,
  • Ting Yi,
  • Junheng Lv,
  • Huiping Yang,
  • Xiang Cheng,
  • Feng Liu and
  • Xuexiao Zou

31 December 2019

Mitochondrial transcription termination factors (mTERFs) regulate the expression of mitochondrial genes and are closely related to the function of the mitochondrion and chloroplast. In this study, the mTERF gene family in capsicum (Capsicum annuum L....

  • Communication
  • Open Access
5 Citations
2,892 Views
11 Pages

Mitochondrial Localization of the Yeast Forkhead Factor Hcm1

  • María José Rodríguez Colman,
  • Joaquim Ros and
  • Elisa Cabiscol

16 December 2020

Hcm1 is a member of the forkhead transcription factor family involved in segregation, spindle pole dynamics, and budding in Saccharomyces cerevisiae. Our group described the role of Hcm1 in mitochondrial biogenesis and stress resistance, and in the c...

  • Review
  • Open Access
20 Citations
6,750 Views
24 Pages

35 Years of TFAM Research: Old Protein, New Puzzles

  • Natalya Kozhukhar and
  • Mikhail F. Alexeyev

6 June 2023

Transcription Factor A Mitochondrial (TFAM), through its contributions to mtDNA maintenance and expression, is essential for cellular bioenergetics and, therefore, for the very survival of cells. Thirty-five years of research on TFAM structure and fu...

  • Article
  • Open Access
4 Citations
1,513 Views
16 Pages

14 September 2024

The mitochondrial genome (mitogenome) of Thysanoptera has extensive gene rearrangement, and some species have repeatable control regions. To investigate the characteristics of the gene expression, transcription and post-transcriptional processes in s...

  • Article
  • Open Access
4 Citations
3,357 Views
15 Pages

11 August 2021

Plant mitochondrial transcription is initiated from multiple promoters without an apparent motif, which precludes their identification in other species based on sequence comparisons. Even though coding regions take up only a small fraction of plant m...

  • Review
  • Open Access
91 Citations
11,775 Views
14 Pages

Organization of DNA in Mammalian Mitochondria

  • Géraldine Farge and
  • Maria Falkenberg

As with all organisms that must organize and condense their DNA to fit within the limited volume of a cell or a nucleus, mammalian mitochondrial DNA (mtDNA) is packaged into nucleoprotein structures called nucleoids. In this study, we first introduce...

  • Article
  • Open Access
7 Citations
2,711 Views
23 Pages

21 August 2024

Skin aging is associated with the increased production of mitochondrial reactive oxygen species (mtROS) due to mitochondrial dysfunction, and various phytonutrients and estrogens have been shown to improve skin health. Thus, the aim of the current st...

  • Article
  • Open Access
19 Citations
4,268 Views
25 Pages

3 February 2021

Plastid gene expression (PGE) is essential for chloroplast biogenesis and function and, hence, for plant development. However, many aspects of PGE remain obscure due to the complexity of the process. A hallmark of nuclear-organellar coordination of g...

  • Article
  • Open Access
1,405 Views
15 Pages

Mitochondrial Gene Expression of Three Different Dragonflies Under the Stress of Chlorpyrifos

  • Yuxin Chen,
  • Ziwen Yang,
  • Zhiqiang Guo,
  • Lemei Zhan,
  • Kenneth B. Storey,
  • Danna Yu and
  • Jiayong Zhang

16 January 2025

Chlorpyrifos (CPF) is an organophosphate insecticide that is extensively utilized globally due to its effectiveness against over 200 pest species. CPF exhibits its toxicity primarily through the inhibition of the acetylcholinesterase (AChE) enzyme, w...

  • Article
  • Open Access
7 Citations
4,219 Views
15 Pages

11 November 2022

DNA–Protein cross-links (DPCs) are cytotoxic DNA lesions with a protein covalently bound to the DNA. Although much has been learned about the formation, repair, and biological consequences of DPCs in the nucleus, little is known regarding mitoc...

  • Article
  • Open Access
11 Citations
3,513 Views
19 Pages

TAT-Conjugated NDUFS8 Can Be Transduced into Mitochondria in a Membrane-Potential-Independent Manner and Rescue Complex I Deficiency

  • Bo-Yu Lin,
  • Gui-Teng Zheng,
  • Kai-Wen Teng,
  • Juan-Yu Chang,
  • Chao-Chang Lee,
  • Pin-Chao Liao and
  • Mou-Chieh Kao

NADH dehydrogenase (ubiquinone) Fe-S protein 8 (NDUFS8) is a nuclear-encoded core subunit of human mitochondrial complex I. Defects in NDUFS8 are associated with Leigh syndrome and encephalomyopathy. Cell-penetrating peptide derived from the HIV-1 tr...

  • Article
  • Open Access
20 Citations
4,564 Views
22 Pages

7 October 2020

VDACs (voltage-dependent anion-selective channels) are pore-forming proteins of the outer mitochondrial membrane, whose permeability is primarily due to VDACs’ presence. In higher eukaryotes, three isoforms are raised during the evolution: they...

  • Review
  • Open Access
180 Citations
20,465 Views
28 Pages

FOXO3a from the Nucleus to the Mitochondria: A Round Trip in Cellular Stress Response

  • Candida Fasano,
  • Vittoria Disciglio,
  • Stefania Bertora,
  • Martina Lepore Signorile and
  • Cristiano Simone

19 September 2019

Cellular stress response is a universal mechanism that ensures the survival or negative selection of cells in challenging conditions. The transcription factor Forkhead box protein O3 (FOXO3a) is a core regulator of cellular homeostasis, stress respon...

  • Review
  • Open Access
52 Citations
10,004 Views
34 Pages

Inflammation and oxidative stress are interlinked and interdependent processes involved in many chronic diseases, including neurodegeneration, diabetes, cardiovascular diseases, and cancer. Therefore, targeting inflammatory pathways may represent a p...

  • Review
  • Open Access
27 Citations
4,670 Views
16 Pages

21 January 2021

Present-day chloroplast and mitochondrial genomes contain only a few dozen genes involved in ATP synthesis, photosynthesis, and gene expression. The proteins encoded by these genes are only a small fraction of the many hundreds of proteins that act i...

  • Article
  • Open Access
16 Citations
4,363 Views
19 Pages

Metabolic Reprogramming in Response to Alterations of Mitochondrial DNA and Mitochondrial Dysfunction in Gastric Adenocarcinoma

  • Tzu-Ching Chang,
  • Hui-Ting Lee,
  • Siao-Cian Pan,
  • Shih-Han Cho,
  • Chieh Cheng,
  • Liang-Hung Ou,
  • Chia-I Lin,
  • Chen-Sung Lin and
  • Yau-Huei Wei

6 February 2022

We used gastric cancer cell line AGS and clinical samples to investigate the roles of mitochondrial DNA (mtDNA) alterations and mitochondrial respiratory dysfunction in gastric adenocarcinoma (GAC). A total of 131 clinical samples, including 17 norma...

  • Review
  • Open Access
16 Citations
12,958 Views
18 Pages

Mitochondrial DNA: Consensuses and Controversies

  • Inna Shokolenko and
  • Mikhail Alexeyev

10 June 2022

In the course of its short history, mitochondrial DNA (mtDNA) has made a long journey from obscurity to the forefront of research on major biological processes. mtDNA alterations have been found in all major disease groups, and their significance rem...

  • Article
  • Open Access
1 Citations
1,168 Views
18 Pages

Functional Attributes of Synovial Fluid from Osteoarthritic Knee Exacerbate Cellular Inflammation and Metabolic Stress, and Fosters Monocyte to Macrophage Differentiation

  • Vanshika Srivastava,
  • Abhay Harsulkar,
  • Shama Aphale,
  • Aare Märtson,
  • Sulev Kõks,
  • Priya Kulkarni and
  • Shantanu Deshpande

Background: Besides conventional norms that recognize synovial fluid (SF) as a joint lubricant, nutritional channel, and a diagnostic tool in knee osteoarthritis (kOA), based on the authors previous studies, this study aims to define functional role...

  • Review
  • Open Access
3 Citations
4,021 Views
16 Pages

The Regulation of the Disease-Causing Gene FXN

  • Yi Na Dong,
  • Elizabeth Mercado-Ayón,
  • Jennifer Coulman,
  • Liam Flatley,
  • Lucie Vanessa Ngaba,
  • Miniat W. Adeshina and
  • David R. Lynch

15 June 2024

Friedreich’s ataxia (FRDA) is a progressive neurodegenerative disease caused in almost all patients by expanded guanine–adenine–adenine (GAA) trinucleotide repeats within intron 1 of the FXN gene. This results in a relative deficien...

  • Article
  • Open Access
15 Citations
3,865 Views
14 Pages

Isolinderalactone Induces Cell Death via Mitochondrial Superoxide- and STAT3-Mediated Pathways in Human Ovarian Cancer Cells

  • Shakya Rajina,
  • Woo Jean Kim,
  • Jung-Hyun Shim,
  • Kyung-Soo Chun,
  • Sang Hoon Joo,
  • Hwa Kyoung Shin,
  • Seo-Yeon Lee and
  • Joon-Seok Choi

13 October 2020

The mortality rate of ovarian cancer (OC) worldwide increases with age. OC is an often fatal cancer with a curative rate of only 20–30%, as symptoms often appear after disease progression. Studies have reported that isolinderalactone (ILL), a f...

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