Full-Length Transcriptome Profiling of Coridius chinensis Mitochondrial Genome Reveals the Transcription of Genes with Ancestral Arrangement in Insects
Abstract
:1. Introduction
2. Materials and Methods
2.1. Full-Length Transcriptome Sequencing
2.2. Data Assessment and Quality Control of RNA Raw Data
2.3. Mitogenome Sequencing
2.4. Mitochondrial Transcriptome Analysis
3. Results
3.1. The Annotation of C. chinensis Mitogenome
3.2. The Quantitative Transcription Map of C. chinensis Mitogenome
3.3. Detection of lncRNAs from Mitochondrial Control Region
3.4. The Proposed Model of Mitochondrial Transcription
3.5. Transcripts of tRNA and rRNA
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Gene | Coding Strand | Annotations Using DNA Sequencing | Annotations According to Transcripts | ||||||
---|---|---|---|---|---|---|---|---|---|
Position (J Strand as Reference) | Length/bp | Start Codon | Stop Codon | Position (J Strand as Reference) | Length/bp | Start Codon | Stop Codon | ||
trnI | J | 1-71 | 71 | 1-71 | 71 | ||||
trnQ | N | 142-73 | 70 | 142-73 | 70 | ||||
trnM | J | 155-224 | 70 | 155-224 | 70 | ||||
ND2 | J | 229-1206 | 978 | AUA | UAA | 229-1,204 | 976 | AUA | U |
trnW | J | 1205-1268 | 64 | 1205-1268 | 64 | ||||
trnC | N | 1329-1261 | 69 | 1329-1261 | 69 | ||||
trnY | N | 1402-1337 | 66 | 1402-1337 | 66 | ||||
COX1 | J | 1407-2942 | 1536 | UUG | UAA | 1407-2942 | 1536 | UUG | UAA |
trnL2 | J | 2949-3019 | 71 | 2949-3019 | 71 | ||||
COX2 | J | 3020-3698 | 679 | AUA | U | 3020-3698 | 679 | AUA | U |
trnK | J | 3699-3770 | 72 | 3699-3770 | 72 | ||||
trnD | J | 3775-3842 | 68 | 3775-3842 | 68 | ||||
ATP8 | J | 3844-4002 | 159 | UUG | UAA | 3844-4002 | 159 | UUG | UAA |
ATP6 | J | 3996-4679 | 684 | AUG | UAA | 3996-4665 | 670 | AUG | U |
COX3 | J | 4666-5454 | 789 | AUG | UAA | 4666-5453 | 788 | AUG | UA |
trnG | J | 5454-5518 | 65 | 5454-5518 | 65 | ||||
ND3 | J | 5516-5872 | 357 | AUA | UAA | 5519-5872 | 354 | AUA | UAA |
trnA | J | 5881-5949 | 69 | 5881-5949 | 69 | ||||
trnR | J | 5950-6017 | 68 | 5950-6017 | 68 | ||||
trnN | J | 6019-6084 | 66 | 6019-6084 | 66 | ||||
trnS1 | J | 6085-6153 | 69 | 6085-6153 | 69 | ||||
trnE | J | 6154-6218 | 65 | 6154-6218 | 65 | ||||
trnF | N | 6282-6217 | 66 | 6282-6217 | 66 | ||||
ND5 | N | 7990-6290 | 1701 | AUU | UAA | 7990-6290 | 1701 | AUU | UAA |
trnH | N | 8057-7992 | 66 | 8057-7992 | 66 | ||||
ND4 | N | 9384-8059 | 1326 | AUG | UAG | 9384-8059 | 1326 | AUG | UAG |
ND4L | N | 9665-9378 | 288 | UUG | UAA | 9665-9378 | 288 | UUG | UAA |
trnT | J | 9668-9732 | 65 | 9668-9732 | 65 | ||||
trnP | N | 9797-9734 | 64 | 9797-9734 | 64 | ||||
ND6 | J | 9801-10,280 | 480 | AUG | UAA | 9801-10,280 | 480 | AUG | UAA |
CYTB | J | 10,282-11,418 | 1137 | AUG | UAA | 10,282-11,418 | 1137 | AUG | UAA |
trnS2 | J | 11,421-11,489 | 69 | 11,421-11,489 | 69 | ||||
ND1 | N | 12,439-11,510 | 930 | AUG | UAA | 12,433-11,510 | 924 | AUG | UAA |
trnL1 | N | 12,500-12,434 | 67 | 12,500-12,434 | 67 | ||||
lrRNA | N | 13,774-12,501 | 1274 | 13,774-12,501 | 1274 | ||||
trnV | N | 13,841-13,775 | 67 | 13,841-13,775 | 67 | ||||
srRNA | N | 14,652-13,842 | 811 | 14,661-13,842 | 820 | ||||
CR | 14,653-16,214 | 1562 | 14,662-16,214 | 1553 |
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Xu, S.; Duan, Y.; Ma, L.; Song, F.; Tian, L.; Cai, W.; Li, H. Full-Length Transcriptome Profiling of Coridius chinensis Mitochondrial Genome Reveals the Transcription of Genes with Ancestral Arrangement in Insects. Genes 2023, 14, 225. https://doi.org/10.3390/genes14010225
Xu S, Duan Y, Ma L, Song F, Tian L, Cai W, Li H. Full-Length Transcriptome Profiling of Coridius chinensis Mitochondrial Genome Reveals the Transcription of Genes with Ancestral Arrangement in Insects. Genes. 2023; 14(1):225. https://doi.org/10.3390/genes14010225
Chicago/Turabian StyleXu, Shiwen, Yuange Duan, Ling Ma, Fan Song, Li Tian, Wanzhi Cai, and Hu Li. 2023. "Full-Length Transcriptome Profiling of Coridius chinensis Mitochondrial Genome Reveals the Transcription of Genes with Ancestral Arrangement in Insects" Genes 14, no. 1: 225. https://doi.org/10.3390/genes14010225
APA StyleXu, S., Duan, Y., Ma, L., Song, F., Tian, L., Cai, W., & Li, H. (2023). Full-Length Transcriptome Profiling of Coridius chinensis Mitochondrial Genome Reveals the Transcription of Genes with Ancestral Arrangement in Insects. Genes, 14(1), 225. https://doi.org/10.3390/genes14010225