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28 Results Found

  • Article
  • Open Access
11 Citations
4,646 Views
16 Pages

Expanding the Molecular Spectrum of ANKRD11 Gene Defects in 33 Patients with a Clinical Presentation of KBG Syndrome

  • Ilaria Bestetti,
  • Milena Crippa,
  • Alessandra Sironi,
  • Francesca Tumiatti,
  • Maura Masciadri,
  • Marie Falkenberg Smeland,
  • Swati Naik,
  • Oliver Murch,
  • Maria Teresa Bonati and
  • Alice Spano
  • + 17 authors

KBG syndrome (KBGS) is a neurodevelopmental disorder caused by the Ankyrin Repeat Domain 11 (ANKRD11) haploinsufficiency. Here, we report the molecular investigations performed on a cohort of 33 individuals with KBGS clinical suspicion. By using a mu...

  • Article
  • Open Access
1 Citations
1,447 Views
12 Pages

Chromosomal Deletion Involving ANKRD26 Leads to Expression of a Fusion Protein Responsible for ANKRD26-Related Thrombocytopenia

  • Gianluca Dell’Orso,
  • Tommaso Passarella,
  • Serena Cappato,
  • Enrico Cappelli,
  • Stefano Regis,
  • Massimo Maffei,
  • Matilde Balbi,
  • Silvia Ravera,
  • Daniela Di Martino and
  • Silvia Viaggi
  • + 15 authors

ANKRD26-related thrombocytopenia (ANKRD26-RT) is characterized by lifelong mild to moderate thrombocytopenia. Patients suffer from an increased susceptibility to acute or chronic myeloid leukemia, myelodysplastic syndrome, or chronic lymphocytic leuk...

  • Article
  • Open Access
11 Citations
4,472 Views
14 Pages

16 June 2019

Ankyrin repeats, the most common protein–protein interaction motifs in nature, are widely present in proteins of both eukaryotic and prokaryotic cells. Ankyrin repeat-containing proteins play diverse biological functions. Here, we identified th...

  • Article
  • Open Access
7 Citations
2,891 Views
16 Pages

CircANKRD12 Is Induced in Endothelial Cell Response to Oxidative Stress

  • Christine Voellenkle,
  • Paola Fuschi,
  • Martina Mutoli,
  • Matteo Carrara,
  • Paolo Righini,
  • Giovanni Nano,
  • Carlo Gaetano and
  • Fabio Martelli

9 November 2022

Redox imbalance of the endothelial cells (ECs) plays a causative role in a variety of cardiovascular diseases. In order to better understand the molecular mechanisms of the endothelial response to oxidative stress, the involvement of circular RNAs (c...

  • Article
  • Open Access
17 Citations
5,726 Views
25 Pages

Differences in the Loin Tenderness of Iberian Pigs Explained through Dissimilarities in Their Transcriptome Expression Profile

  • Miguel Ángel Fernández-Barroso,
  • Carmen Caraballo,
  • Luis Silió,
  • Carmen Rodríguez,
  • Yolanda Nuñez,
  • Fernando Sánchez-Esquiliche,
  • Gema Matos,
  • Juan María García-Casco and
  • María Muñoz

22 September 2020

Tenderness is one of the most important meat quality traits and it can be measured through shear force with the Warner–Bratzler test. In the current study, we use the RNA-seq technique to analyze the transcriptome of Longissimus dorsi (LD) musc...

  • Article
  • Open Access
21 Citations
5,464 Views
16 Pages

Integrated Genomic Analysis Identifies ANKRD36 Gene as a Novel and Common Biomarker of Disease Progression in Chronic Myeloid Leukemia

  • Zafar Iqbal,
  • Muhammad Absar,
  • Tanveer Akhtar,
  • Aamer Aleem,
  • Abid Jameel,
  • Sulman Basit,
  • Anhar Ullah,
  • Sibtain Afzal,
  • Khushnooda Ramzan and
  • Mahmood Rasool
  • + 13 authors

15 November 2021

Background: Chronic myeloid leukemia (CML) is initiated in bone marrow due to chromosomal translocation t(9;22) leading to fusion oncogene BCR-ABL. Targeting BCR-ABL by tyrosine kinase inhibitors (TKIs) has changed fatal CML into an almost curable di...

  • Article
  • Open Access
3 Citations
3,356 Views
22 Pages

With the development of society, the incidence of dementia and type 2 diabetes (T2DM) in the elderly has been increasing. Although the correlation between T2DM and mild cognitive impairment (MCI) has been confirmed in the previous literature, the int...

  • Article
  • Open Access
5 Citations
1,799 Views
19 Pages

27 August 2024

The main goal of this study was to pinpoint functional candidate genes associated with multiple economically important traits in Nellore cattle. After quality control, 1830 genomic regions sourced from 52 scientific peer-reviewed publications were us...

  • Article
  • Open Access
9 Citations
4,217 Views
18 Pages

Integration of ATAC-Seq and RNA-Seq Analysis to Identify Key Genes in the Longissimus Dorsi Muscle Development of the Tianzhu White Yak

  • Jingsheng Li,
  • Zongchang Chen,
  • Yanbin Bai,
  • Yali Wei,
  • Dashan Guo,
  • Zhanxin Liu,
  • Yanmei Niu,
  • Bingang Shi,
  • Xiaolan Zhang and
  • Yuan Cai
  • + 6 authors

21 December 2023

During the postnatal stages, skeletal muscle development undergoes a series of meticulously regulated alterations in gene expression. However, limited studies have employed chromatin accessibility to unravel the underlying molecular mechanisms govern...

  • Article
  • Open Access
4 Citations
3,024 Views
12 Pages

Investigation of Therapeutic Response Markers for Acupuncture in Parkinson’s Disease: An Exploratory Pilot Study

  • Sang-Min Park,
  • Aeyung Kim,
  • Gunhyuk Park,
  • Ojin Kwon,
  • Sangsoo Park,
  • Horyong Yoo and
  • Jung-Hee Jang

17 September 2021

In this preliminary pilot study, we investigated the specific genes implicated in the therapeutic response to acupuncture in patients with Parkinson’s disease (PD). Transcriptome alterations following acupuncture in blood samples collected during our...

  • Article
  • Open Access
34 Citations
5,057 Views
19 Pages

RNA-Seq Analysis Identifies Differentially Expressed Genes in the Longissimus dorsi of Wagyu and Chinese Red Steppe Cattle

  • Guanghui Li,
  • Runjun Yang,
  • Xin Lu,
  • Yue Liu,
  • Wei He,
  • Yue Li,
  • Haibin Yu,
  • Lihong Qin,
  • Yang Cao and
  • Zhihui Zhao
  • + 1 author

26 December 2022

Meat quality has a close relationship with fat and connective tissue; therefore, screening and identifying functional genes related to lipid metabolism is essential for the production of high-grade beef. The transcriptomes of the Longissimus dorsi mu...

  • Case Report
  • Open Access
3 Citations
2,577 Views
9 Pages

A Novel Constitutional t(3;8)(p26;q21) and ANKRD26 and SRP72 Variants in a Child with Myelodysplastic Neoplasm: Clinical Implications

  • Viviane Lamim Lovatel,
  • Ana Paula Bueno,
  • Elaiza Almeida Antônio de Kós,
  • Laura Guimarães Corrêa Meyer,
  • Gerson Moura Ferreira,
  • Mayara de Fátima Kalonji,
  • Fabiana Vieira de Mello,
  • Cristiane Bedran Milito,
  • Elaine Sobral da Costa and
  • Eliana Abdelhay
  • + 3 authors

28 April 2023

Background: Childhood myelodysplastic neoplasm (cMDS) often raises concerns about an underlying germline predisposition, and its verification is necessary to guide therapeutic choice and allow family counseling. Here, we report a novel constitutional...

  • Article
  • Open Access
33 Citations
7,157 Views
23 Pages

Genetic Dissection of Hypertrophic Cardiomyopathy with Myocardial RNA-Seq

  • Jun Gao,
  • John Collyer,
  • Maochun Wang,
  • Fengping Sun and
  • Fuyi Xu

Hypertrophic cardiomyopathy (HCM) is an inherited disorder of the myocardium, and pathogenic mutations in the sarcomere genes myosin heavy chain 7 (MYH7) and myosin-binding protein C (MYBPC3) explain 60%–70% of observed clinical cases. The hete...

  • Article
  • Open Access
9 Citations
3,745 Views
22 Pages

New Gene Markers of Exosomal Regulation Are Involved in Porcine Granulosa Cell Adhesion, Migration, and Proliferation

  • Jakub Kulus,
  • Wiesława Kranc,
  • Magdalena Kulus,
  • Dorota Bukowska,
  • Hanna Piotrowska-Kempisty,
  • Paul Mozdziak,
  • Bartosz Kempisty and
  • Paweł Antosik

Exosomal regulation is intimately involved in key cellular processes, such as migration, proliferation, and adhesion. By participating in the regulation of basic mechanisms, extracellular vesicles are important in intercellular signaling and the func...

  • Feature Paper
  • Article
  • Open Access
29 Citations
5,165 Views
18 Pages

29 March 2022

Tuberculosis (TB) is an infectious disease caused by Mycobacterium tuberculosis (M.tb.). Our integrative analysis aims to identify the transcriptional profiling and gene expression signature that distinguish individuals with active TB (ATB) disease,...

  • Article
  • Open Access
5 Citations
4,068 Views
13 Pages

Identification of Novel Genes Involved in Hyperglycemia in Mice

  • Wenke Jonas,
  • Oliver Kluth,
  • Anett Helms,
  • Sarah Voß,
  • Markus Jähnert,
  • Pascal Gottmann,
  • Thilo Speckmann,
  • Birgit Knebel,
  • Alexandra Chadt and
  • Hadi Al-Hasani
  • + 2 authors

Current attempts to prevent and manage type 2 diabetes have been moderately effective, and a better understanding of the molecular roots of this complex disease is important to develop more successful and precise treatment options. Recently, we initi...

  • Article
  • Open Access
1 Citations
1,397 Views
25 Pages

29 August 2025

Neuropathic pain (NP) is a debilitating chronic pain condition with complex molecular mechanisms and inadequate therapeutic solutions. This study aims to identify temporal transcriptomic changes in NP using multiple bioinformatics and machine learnin...

  • Article
  • Open Access
16 Citations
5,620 Views
15 Pages

Hyaluronic Acid Influence on Normal and Osteoarthritic Tissue-Engineered Cartilage

  • Shabnam Hemmati-Sadeghi,
  • Jochen Ringe,
  • Tilo Dehne,
  • Rainer Haag and
  • Michael Sittinger

The aim of this study is to identify gene expression profiles associated with hyaluronic acid (HA) treatment of normal and osteoarthritis (OA)-like tissue-engineered cartilage. 3D cartilage micromasses were treated with tumour necrosis factor-α...

  • Article
  • Open Access
6 Citations
3,799 Views
14 Pages

30 November 2021

Gynostemma pentaphyllum (GP), known as “southern ginseng”, can reduce the blood pressure and blood lipid levels. In this study, 300 layer chicks of one day old were divided randomly into three groups (control group (base diet), high addit...

  • Article
  • Open Access
5 Citations
2,781 Views
22 Pages

Loss of ANCO1 Expression Regulates Chromatin Accessibility and Drives Progression of Early-Stage Triple-Negative Breast Cancer

  • Meng Yuan,
  • Megan E. Barefoot,
  • Kendell Peterson,
  • Moray J. Campbell,
  • Jan K. Blancato,
  • Manjing Chen,
  • Marcel O. Schmidt,
  • Amber J. Kiliti,
  • Hong-Bin Fang and
  • Anton Wellstein
  • + 2 authors

Mutations in the gene ankyrin repeat domain containing 11 (ANKRD11/ANCO1) play a role in neurodegenerative disorders, and its loss of heterozygosity and low expression are seen in some cancers. Here, we show that low ANCO1 mRNA and protein expression...

  • Article
  • Open Access
7 Citations
3,955 Views
19 Pages

Transcriptome Sequencing Analysis Reveals Dynamic Changes in Major Biological Functions during the Early Development of Clearhead Icefish, Protosalanx chinensis

  • Xuemei Tang,
  • Shulun Jiang,
  • Henglin Wang,
  • Yanfeng Zhou,
  • Fei Peng,
  • Xizhao Zhang,
  • Yifan Zhou,
  • Shiyue Guo and
  • Yang You

21 May 2022

Early development, when many important developmental events occur, is a critical period for fish. However, research on the early development of clearhead icefish is very limited, especially in molecular research. In this study, we aimed to explore th...

  • Article
  • Open Access
3 Citations
2,551 Views
21 Pages

Comprehensive Atlas of Alternative Splicing Reveals NSRP1 Promoting Adipogenesis through CCDC18

  • Lei Liu,
  • Wei Wang,
  • Weiwei Liu,
  • Xingzheng Li,
  • Guoqiang Yi,
  • Adeyinka Abiola Adetula,
  • Haibo Huang and
  • Zhonglin Tang

Alternative splicing (AS) plays a crucial role in regulating gene expression, function, and diversity. However, limited reports exist on the identification and comparison of AS in Eastern and Western pigs. Here, we analyzed 243 transcriptome data fro...

  • Article
  • Open Access
6 Citations
2,378 Views
15 Pages

Comprehensive Gene Expression Profiling Analysis of Adipose Tissue in Male Individuals from Fat- and Thin-Tailed Sheep Breeds

  • Sana Farhadi,
  • Karim Hasanpur,
  • Jalil Shodja Ghias,
  • Valiollah Palangi,
  • Aristide Maggiolino and
  • Vincenzo Landi

10 November 2023

It has been shown that tail fat content varies significantly among sheep breeds and plays a significant role in meat quality. Recently, significant efforts have been made to understand the physiological, biochemical, and genomic regulation of fat dep...

  • Article
  • Open Access
4 Citations
3,154 Views
11 Pages

Previous genome-wide association studies did not show a consistent association between the BOLL gene (rs700651, 2q33.1) and intracranial aneurysm (IA) susceptibility. We aimed to perform an updated meta-analysis for the potential IA-susceptibility lo...

  • Article
  • Open Access
4 Citations
2,157 Views
21 Pages

Genome-Wide Association Studies and Candidate Genes for Egg Production Traits in Layers from an F2 Crossbred Population Produced Using Two Divergently Selected Chicken Breeds, Russian White and Cornish White

  • Natalia A. Volkova,
  • Michael N. Romanov,
  • Alan Yu. Dzhagaev,
  • Polina V. Larionova,
  • Ludmila A. Volkova,
  • Alexandra S. Abdelmanova,
  • Anastasia N. Vetokh,
  • Darren K. Griffin and
  • Natalia A. Zinovieva

15 May 2025

Background/Objectives: Finding single nucleotide polymorphisms (SNPs) and candidate genes that influence the expression of key traits is essential for genomic selection and helps improve the efficiency of poultry production. Here, we aimed to conduct...

  • Article
  • Open Access
7 Citations
2,673 Views
14 Pages

Integrated 4D Analysis of Intramuscular Fat Deposition: Quantitative Proteomic and Transcriptomic Studies in Wannanhua Pig Longissimus Dorsi Muscle

  • Xiaojin Li,
  • Fei Xie,
  • Ruidong Li,
  • Lei Li,
  • Man Ren,
  • Mengmeng Jin,
  • Ju Zhou,
  • Chonglong Wang and
  • Shenghe Li

4 January 2024

Wannanhua (WH) is a pig breed indigenous to Anhui Province, China. This breed has a high intramuscular fat (IMF) content, making it an ideal model for investigating lipid deposition mechanisms in pigs. IMF content is one of the main indicators of mea...

  • Article
  • Open Access
9 Citations
2,946 Views
21 Pages

Lost and Found: The Family of NF-κB Inhibitors Is Larger than Assumed in Salmonid Fish

  • Doret R. van Muilekom,
  • Bertrand Collet,
  • Henrike Rebl,
  • Kristina Zlatina,
  • Fabio Sarais,
  • Tom Goldammer and
  • Alexander Rebl

NF-κB signalling is largely controlled by the family of ‘inhibitors of NF-κB’ (IκB). The relevant databases indicate that the genome of rainbow trout contains multiple gene copies coding for iκbα (nfkbia), i&...

  • Article
  • Open Access
6 Citations
3,306 Views
16 Pages

High-Throughput Sequencing Reveals That Rotundine Inhibits Colorectal Cancer by Regulating Prognosis-Related Genes

  • Lingyu Huang,
  • Tongxiang Zou,
  • Wenken Liang,
  • Chune Mo,
  • Jianfen Wei,
  • Yecheng Deng and
  • Minglin Ou

20 March 2023

Background: Rotundine is an herbal medicine with anti-cancer effects. However, little is known about the anti-cancer effect of rotundine on colorectal cancer. Therefore, our study aimed to investigate the specific molecular mechanism of rotundine inh...