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Volume 14
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Biology, Volume 14, Issue 7 (July 2025) – 116 articles

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10 pages, 711 KiB  
Brief Report
High Variability in Human Sperm Membrane Potential over Time Can Limit Its Reliability as a Predictor in ART Outcomes
by Tomás J. Steeman, Carolina Baro Graf, Analia G. Novero, Mariano G. Buffone and Dario Krapf
Biology 2025, 14(7), 851; https://doi.org/10.3390/biology14070851 (registering DOI) - 12 Jul 2025
Abstract
Sperm membrane potential (Em) hyperpolarization during capacitation is a functional hallmark of fertilizing ability and has been proposed as a predictive biomarker for conventional in vitro fertilization (IVF) success. However, it is unclear whether Em remains stable across ejaculates over [...] Read more.
Sperm membrane potential (Em) hyperpolarization during capacitation is a functional hallmark of fertilizing ability and has been proposed as a predictive biomarker for conventional in vitro fertilization (IVF) success. However, it is unclear whether Em remains stable across ejaculates over time and can reliably guide assisted reproductive technology (ART) decisions in advance. Thus, we aimed to evaluate the temporal consistency of human sperm Em within individuals and assess its utility as a prognostic marker when measured days or weeks prior to IVF procedures. Em was assessed in capacitated and non-capacitated sperm from normospermic donors at three time points over 28 days, using a fluorometric assay. Capacitated values were compared to a −48.6 mV threshold previously associated with successful fertilization. Intra-donor Em variability and coefficients of variation (CV) were analyzed statistically. Our results showed that Em values exhibited significant intra-donor variability over time (p = 0.007), with approximately half of the donors crossing the −48.6 mV functional threshold across sessions. Capacitated sperm samples showed significantly greater variability than non-capacitated ones, with several donors exceeding a 30% CV cutoff. No consistent correlation was found between CV and mean Em values. While Em remains a promising functional marker when assessed on the day of IVF, its temporal variability undermines its reliability as a predictive tool for ART decisions made in advance. These findings underscore the importance of timing in functional sperm assessments and call for further studies to identify the physiological factors influencing Em stability. Full article
(This article belongs to the Section Cell Biology)
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12 pages, 3338 KiB  
Article
Natural CCD2 Variants and RNA Interference for Boosting Crocin Biosynthesis in Tomato
by Elena Moreno-Giménez, Eduardo Parreño, Lucía Morote, Alberto José López Jiménez, Cristian Martínez Fajardo, Silvia Presa, Ángela Rubio-Moraga, Antonio Granell, Oussama Ahrazem and Lourdes Gómez-Gómez
Biology 2025, 14(7), 850; https://doi.org/10.3390/biology14070850 (registering DOI) - 12 Jul 2025
Abstract
Crocin biosynthesis involves a complex network of enzymes with biosynthetic and modifier enzymes, and the manipulation of these pathways holds promise for improving human health through the broad exploitation of these bioactive metabolites. Crocins play a significant role in human nutrition and health, [...] Read more.
Crocin biosynthesis involves a complex network of enzymes with biosynthetic and modifier enzymes, and the manipulation of these pathways holds promise for improving human health through the broad exploitation of these bioactive metabolites. Crocins play a significant role in human nutrition and health, as they exhibit antioxidant and anti-inflammatory activity. Plants that naturally accumulate high levels of crocins are scarce, and the production of crocins is highly limited by the characteristics of the crops and their yield. The CCD2 enzyme, initially identified in saffron, is responsible for converting zeaxanthin into crocetin, which is further modified to crocins by aldehyde dehydrogenases and glucosyltransferase enzymes. Crops like tomato fruits, which naturally contain high levels of carotenoids, offer valuable genetic resources for expanding synthetic biology tools. In an effort to explore CCD2 enzymes with improved activity, two CCD2 alleles from saffron and Crocosmia were introduced into tomato, together with a UGT gene. Furthermore, in order to increase the zeaxanthin pool in the fruit, an RNA interference construct was introduced to limit the conversion of zeaxanthin to violaxanthin. The expression of saffron CCD2, CsCCDD2L, led to the creation of transgenic tomatoes with significantly high crocins levels, reaching concentrations of 4.7 mg/g dry weight. The Crocosmia allele, CroCCD2, also resulted in high crocins levels, reaching a concentration of 2.1 mg/g dry weight. These findings underscore the importance of enzyme variants in synthetic biology, as they enable the development of crops rich in beneficial apocarotenoids. Full article
(This article belongs to the Special Issue Plant Natural Products: Mechanisms of Action for Promoting Health)
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18 pages, 2348 KiB  
Article
Glucomannan Accumulation Induced by Exogenous Lanthanum in Amorphophallus konjac: Insights from a Comparative Transcriptome Analysis
by Xiaoxian Li, Zhouting Zeng, Siyi Zhu, Xirui Yang, Xiaobo Xuan and Zhenming Yu
Biology 2025, 14(7), 849; https://doi.org/10.3390/biology14070849 - 11 Jul 2025
Abstract
Konjac glucomannan (KGM), derived from Amorphophallus konjac, is increasingly utilized in food and pharmaceutical applications. However, inconsistent KGM production across cultivars jeopardizes its quality and market viability. Lanthanum (La) has been shown to promote KGM levels, but the underlying mechanism remains unclear. [...] Read more.
Konjac glucomannan (KGM), derived from Amorphophallus konjac, is increasingly utilized in food and pharmaceutical applications. However, inconsistent KGM production across cultivars jeopardizes its quality and market viability. Lanthanum (La) has been shown to promote KGM levels, but the underlying mechanism remains unclear. In this study, 20~80 mg L−1 La significantly stimulated KGM accumulation compared with the control group. We performed a transcriptome analysis and found 21,047 differentially expressed genes (DEGs), predominantly enriched in carbohydrate and glycan metabolism pathways. A total of 48 DEGs were linked to KGM biosynthesis, with 20 genes (SuSy, INV1/3/5/6, HK1/2, FPK2, GPI3, PGM3, UGP2, GMPP1/4, CslA3~7, CslH2, and MSR1.2) showing significant positive correlations with KGM content. Interestingly, three key terminal pathway genes (UGP1, UGP3, and CslD3) exhibited strong upregulation (log2 fold change > 3). Seven DEGs were validated with qRT-PCR, aligning with the transcriptomic results. Furthermore, 12 hormone-responsive DEGs, including 4 ethylene-related genes (CTR1, EBF1/2, EIN3, and MPK6), 6 auxin-related genes (AUX/IAA1-3, SAUR1-2, and TIR1), and 2 gibberellin-related genes (DELLA1-2), were closely linked to KGM levels. Additionally, the transcription factors bHLH and AP2/ERF showed to be closely related to the biosynthesis of KGM. These results lay the foundation for a model wherein La (Ш) modulates KGM accumulation by coordinately regulating biosynthetic and hormonal pathways via specific transcription factors. Full article
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24 pages, 4222 KiB  
Article
Transcriptome and Cellular Evidence of Depot-Specific Function in Beef Cattle Intramuscular, Subcutaneous, and Visceral Adipose Tissues
by Alexandra P. Tegeler, Hunter R. Ford, Jean Franco Fiallo-Diez, Tainara C. Michelotti, Bradley J. Johnson, Oscar J. Benitez, Dale R. Woerner and Clarissa Strieder-Barboza
Biology 2025, 14(7), 848; https://doi.org/10.3390/biology14070848 - 11 Jul 2025
Abstract
Deposition of intramuscular adipose tissue (IMAT) is the primary determinant for beef quality grade in the U.S. Accumulation of subcutaneous (SCAT) and visceral (VIAT) adipose tissue precedes that of IMAT and often leads to excessive adiposity in beef cattle. Approaches to increase marbling [...] Read more.
Deposition of intramuscular adipose tissue (IMAT) is the primary determinant for beef quality grade in the U.S. Accumulation of subcutaneous (SCAT) and visceral (VIAT) adipose tissue precedes that of IMAT and often leads to excessive adiposity in beef cattle. Approaches to increase marbling while limiting subcutaneous and visceral adiposity are limited. Our objective is to define the depot-specific transcriptome profile and adipocyte function in IMAT, SCAT, and VIAT in beef steers. Transcriptomics revealed the upregulation of adipogenic and lipogenic genes in SCAT and VIAT vs. IMAT. Functional transcriptome analysis demonstrated the activation of pathways for lipid metabolic processes and biosynthesis in SCAT, accompanied by increased preadipocyte proliferation, adipocyte size, and insulin responses of SCAT in vitro. While IMAT had a greater abundance of preadipocytes, they proliferated at a lower rate and differentiated into adipocytes that were smaller and less responsive to insulin compared to SCAT. The upregulation of extracellular matrix genes in IMAT suggests that fat accumulation may be limited by the muscle microenvironment. The activation of inflammatory and immune response pathways, combined with a higher abundance of immune cells, highlighted VIAT as an immune-responsive depot. Our findings reveal transcriptional and cellular profiles underlying fat deposition in SCAT, VIAT, and IMAT in beef cattle. Full article
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40 pages, 1029 KiB  
Review
Biotechnological Potential of Extremophiles: Environmental Solutions, Challenges, and Advancements
by Fabrizia Sepe, Ezia Costanzo, Elena Ionata and Loredana Marcolongo
Biology 2025, 14(7), 847; https://doi.org/10.3390/biology14070847 - 11 Jul 2025
Abstract
Extremophiles are microorganisms capable of living on Earth in ecological niches characterized by peculiar conditions, including extreme temperatures and/or pH, high salt concentrations, and the presence of heavy metals. The development of unique structural and functional adaptation strategies has stimulated an increasing scientific [...] Read more.
Extremophiles are microorganisms capable of living on Earth in ecological niches characterized by peculiar conditions, including extreme temperatures and/or pH, high salt concentrations, and the presence of heavy metals. The development of unique structural and functional adaptation strategies has stimulated an increasing scientific interest since their discovery. The importance of extremophiles lies in their exploitability in significant bioprocesses with several biotechnological applications and their role as a fundamental source of numerous high-value-added biomolecules. This review aims to examine the diversity and specificities of extremophilic archaea and bacteria, with particular emphasis on their potential applications and development in biotechnology and biomedicine. The use of extremophiles and their extremozymes has allowed applications in several fields, such as bioremediation, sustainable agriculture, the recovery of bioactive molecules for use in bioenergy, biomedicine, and nanoparticle production. The comprehension and exploitation of the complex molecular mechanisms that enable life in extreme environments represent a challenge to mitigate current climate change problems and to invest in sustainable development towards a green transition. Full article
(This article belongs to the Special Issue Adaptation of Living Species to Environmental Stress)
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21 pages, 7490 KiB  
Article
Exploring the Biocultural Nexus of Gastrodia elata in Zhaotong: A Pathway to Ecological Conservation and Economic Growth
by Yanxiao Fan, Menghua Tian, Defen Hu and Yong Xiong
Biology 2025, 14(7), 846; https://doi.org/10.3390/biology14070846 - 11 Jul 2025
Abstract
Gastrodia elata, known as Tianma in Chinese, is a valuable medicinal and nutritional resource. The favorable climate of Zhaotong City, Yunnan Province, China, facilitates its growth and nurtures rich biocultural diversity associated with Tianma in the region. Local people not only cultivate [...] Read more.
Gastrodia elata, known as Tianma in Chinese, is a valuable medicinal and nutritional resource. The favorable climate of Zhaotong City, Yunnan Province, China, facilitates its growth and nurtures rich biocultural diversity associated with Tianma in the region. Local people not only cultivate Tianma as a traditional crop but have also developed a series of traditional knowledge related to its cultivation, processing, medicinal use, and culinary applications. In this study, field surveys employing ethnobotanical methods were conducted in Yiliang County, Zhaotong City, from August 2020 to May 2024, focusing on Tianma. A total of 114 key informants participated in semi-structured interviews. The survey documented 23 species (and forms) from seven families related to Tianma cultivation. Among them, there were five Gastrodia resource taxa, including one original species, and four forms. These 23 species served as either target cultivated species, symbiotic fungi (promoting early-stage Gastrodia germination), or fungus-cultivating wood. The Fagaceae family, with 10 species, was the most dominant, as its dense, starch-rich wood decomposes slowly, providing Armillaria with a long-term, stable nutrient substrate. The cultural importance (CI) statistics revealed that Castanea mollissima, G. elata, G. elata f. flavida, G. elata f. glauca, G. elata f. viridis, and Xuehong Tianma (unknown form) exhibited relatively high CI values, indicating their crucial cultural significance and substantial value within the local community. In local communities, traditionally processed dried Tianma tubers are mainly used to treat cardiovascular diseases and also serve as a culinary ingredient, with its young shoots and tubers incorporated into dishes such as cold salads and stewed chicken. To protect the essential ecological conditions for Tianma, the local government has implemented forest conservation measures. The sustainable development of the Tianma industry has alleviated poverty, protected biodiversity, and promoted local economic growth. As a distinctive plateau specialty of Zhaotong, Tianma exemplifies how biocultural diversity contributes to ecosystem services and human well-being. This study underscores the importance of biocultural diversity in ecological conservation and the promotion of human welfare. Full article
(This article belongs to the Special Issue Young Researchers in Conservation Biology and Biodiversity)
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22 pages, 2749 KiB  
Article
Genetic Diversity, Population Structure, and Historical Gene Flow Patterns of Nine Indigenous Greek Sheep Breeds
by Sofia Michailidou, Maria Kyritsi, Eleftherios Pavlou, Antiopi Tsoureki and Anagnostis Argiriou
Biology 2025, 14(7), 845; https://doi.org/10.3390/biology14070845 - 10 Jul 2025
Abstract
Ιn this study, we evaluated the genetic resources of nine Greek sheep breeds. The genotyping data of 292 animals were acquired from Illumina’s OvineSNP50 Genotyping BeadChip. The genetic diversity and inbreeding levels were evaluated using the observed and expected heterozygosity indices, the F [...] Read more.
Ιn this study, we evaluated the genetic resources of nine Greek sheep breeds. The genotyping data of 292 animals were acquired from Illumina’s OvineSNP50 Genotyping BeadChip. The genetic diversity and inbreeding levels were evaluated using the observed and expected heterozygosity indices, the FIS inbreeding coefficient, and runs of homozygosity (ROH). The genetic differentiation of breeds was assessed using the FST index, whereas their population structure was analyzed using admixture and principal components analysis (PCA). Historical recombination patterns and genetic drift were evaluated based on linkage disequilibrium, effective population sizes, and gene flow analysis to reveal migration patterns. PCA revealed distinct clusters mostly separating mountainous, insular, and lowland breeds. The FST value was the lowest between Serres and Karagouniko breeds (0.050). Admixture analysis revealed a genetic substructure for Serres and Kalarritiko breeds, while Chios, followed by Katsika, demonstrated the highest within-breed genetic uniformity. ROH analysis revealed low levels of inbreeding for all breeds. Genetic introgression from both Anatolia and Eastern Europe has been evidenced for Greek sheep breeds. The results also revealed that Greek sheep breeds maintain adequate levels of genetic diversity, without signs of excessive inbreeding, and can serve as valuable resources for the conservation of local biodiversity. Full article
(This article belongs to the Special Issue Genetic Variability within and between Populations)
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24 pages, 3795 KiB  
Article
Ecological Effects of Sargassum fusiforme Cultivation on Coastal Phytoplankton Community Structure and Water Quality: A Study Based on Microscopic Analysis
by Yurong Zhang, Rijin Jiang, Qingxi Han, Zimeng Li, Zhen Mao and Haifeng Jiao
Biology 2025, 14(7), 844; https://doi.org/10.3390/biology14070844 - 10 Jul 2025
Abstract
This study used microscopy-based quantitative enumeration to investigate the effects of large-scale Sargassum fusiforme cultivation on coastal water quality and phytoplankton communities. Data from April (cultivation period) and June (non-cultivation period) in 2018 and 2019 showed that cultivation increased pH and dissolved oxygen [...] Read more.
This study used microscopy-based quantitative enumeration to investigate the effects of large-scale Sargassum fusiforme cultivation on coastal water quality and phytoplankton communities. Data from April (cultivation period) and June (non-cultivation period) in 2018 and 2019 showed that cultivation increased pH and dissolved oxygen (DO). It also reduced nitrate–nitrogen (NO3–N), nitrite–nitrogen (NO2–N), phosphate–phosphorus (PO4–P), total phosphorus (TP), and silicate–silicon (SiO3–Si) concentrations. These changes indicate improved coastal water quality from S. fusiforme cultivation. Nutrient levels rose again during the non-cultivation period. This suggests that water purification decreased without cultivation. Cultivation also lowered the dominance of Skeletonema costatum. This led to a more diverse and stable phytoplankton community. Microscopic observation is valuable for quantifying larger phytoplankton species, and plays an important role in ecological monitoring. These findings provide insights for sustainable aquaculture and ecological restoration. Full article
(This article belongs to the Special Issue Biology, Ecology and Management of Aquatic Macrophytes and Algae—2nd Edition)
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26 pages, 1985 KiB  
Review
Stomatal and Non-Stomatal Leaf Traits for Enhanced Water Use Efficiency in Rice
by Yvonne Fernando, Mark Adams, Markus Kuhlmann and Vito Butardo Jr
Biology 2025, 14(7), 843; https://doi.org/10.3390/biology14070843 - 10 Jul 2025
Abstract
Globally, rice cultivation consumes large amounts of fresh water, and urgent improvements in water use efficiency (WUE) are needed to ensure sustainable production, given increasing water scarcity. While stomatal traits have been a primary focus for enhancing WUE, complex interactions between stomatal and [...] Read more.
Globally, rice cultivation consumes large amounts of fresh water, and urgent improvements in water use efficiency (WUE) are needed to ensure sustainable production, given increasing water scarcity. While stomatal traits have been a primary focus for enhancing WUE, complex interactions between stomatal and non-stomatal leaf traits remain poorly understood. In this review, we present an analysis of stomatal and non-stomatal leaf traits influencing WUE in rice. The data suggests that optimising stomatal density and size will be insufficient to maximise WUE because non-stomatal traits such as mesophyll conductance, leaf anatomy, and biochemical composition significantly modulate the relationship between stomatal conductance and the photosynthetic rate. Integrating recent advances in high-throughput phenotyping, multi-omics technologies, and crop modelling, we suggest that combinations of seemingly contradictory traits can enhance WUE without compromising yield potential. We propose a multi-trait breeding framework that leverages both stomatal and non-stomatal adaptations to develop rice varieties with superior WUE and climate resilience. This integrated approach provides a roadmap for accelerating the development of water-efficient rice cultivars, with broad implications for improving WUE in other crops. Full article
(This article belongs to the Special Issue Multi-omics Approaches in Agricultural Crops to Unravel Responses to Environmental Stresses and Advance Sustainable Agriculture)
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23 pages, 1028 KiB  
Review
Molecular and Genetic Pathogenesis of Oral Cancer: A Basis for Customized Diagnosis and Treatment
by Leonor Barroso, Pedro Veiga, Joana Barbosa Melo, Isabel Marques Carreira and Ilda Patrícia Ribeiro
Biology 2025, 14(7), 842; https://doi.org/10.3390/biology14070842 - 10 Jul 2025
Abstract
Oral cancer, the most common form of head and neck cancer, is worldwide a serious public health problem. Most patients present a locally advanced disease, and face poor prognosis, even with multimodality treatment. They may also develop second primary tumors in the entirety [...] Read more.
Oral cancer, the most common form of head and neck cancer, is worldwide a serious public health problem. Most patients present a locally advanced disease, and face poor prognosis, even with multimodality treatment. They may also develop second primary tumors in the entirety of their upper aerodigestive tract. The most altered signaling pathways are the PI3K/AKT/mTOR, TP53, RB, and the WNT/β-catenin pathways. Genomic and molecular cytogenetic analyses have revealed frequent losses at 3p, 8p, 9p, and 18q, along with gains at 3q, 7p, 8q, and 11q, and several genes frequently affected have been identified, such as TP53, CCND1, CTTN, CDKN2A, EGFR, HRAS, PI3K, ADAM9, MGAM, SIRPB1, and FAT1, among others. Various epigenetic alterations were also found, such as the global hypomethylation and hypermethylation of CDKN2A, APC, MGMT, PTEN, CDH1, TFP12, SOX17, GATA4, ECAD, MGMT, and DAPK. Several microRNAs are upregulated in oral cancer, including miR-21, miR-24, miR-31, miR-184, miR-211, miR-221, and miR-222, while others are downregulated, such as miR-203, miR-100, miR-200, miR-133a, miR-133b, miR-138, and miR-375. The knowledge of this molecular pathogenesis has not yet been translated into clinical practice, apart from the use of cetuximab, an EGFR antibody. Oral tumors are also genetically heterogenous and affect several pathways, which means that, due to the continuous evolution of these genetic alterations, a single biopsy is not sufficient to fully evaluate the most adequate molecular targets when more drugs become available. Liquid biopsies, either resorting to circulating tumor cells, extracellular vesicles or cell-free nucleic acids, have the potential to bypass this problem, and have potential prognostic and staging value. We critically review the current knowledge on the molecular, genetic and epigenetic alterations in oral cancer, as well as the applications and challenges of liquid biopsies in its diagnosis, follow-up, and prognostic stratification. Full article
(This article belongs to the Section Cancer Biology)
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19 pages, 4056 KiB  
Article
Aerobiological Dynamics and Climatic Sensitivity of Airborne Pollen in Southeastern Türkiye: A Two-Year Assessment from Siirt
by Salih Akpınar
Biology 2025, 14(7), 841; https://doi.org/10.3390/biology14070841 - 10 Jul 2025
Abstract
This study investigates the composition, abundance, and seasonal variability of airborne pollen in Siirt, a transitional region between the Irano-Turanian and Mediterranean phytogeographical zones in southeastern Türkiye. The main objective was to assess pollen diversity and its relationship with meteorological parameters over a [...] Read more.
This study investigates the composition, abundance, and seasonal variability of airborne pollen in Siirt, a transitional region between the Irano-Turanian and Mediterranean phytogeographical zones in southeastern Türkiye. The main objective was to assess pollen diversity and its relationship with meteorological parameters over a two-year period (2022–2023). Airborne pollen was collected using a Hirst-type volumetric pollen and spore trap; a total of 18,666 pollen grains/m3 belonging to 37 taxa were identified. Of these, 70.67% originated from woody taxa and 29.33% from herbaceous taxa. Peak concentrations occurred in April, with the lowest levels in December. The dominant taxa, all exceeding 1% of the total, were Pinaceae (31.00%); Cupressaceae/Taxaceae (27.79%); Poaceae (18.42%); Moraceae (4.23%); Amaranthaceae (2.42%); Urticaceae (2.13%); Quercus (1.55%); Fabaceae (1.29%); and Rumex (1.02%). Spearman’s correlation analysis revealed significant relationships between daily pollen concentrations and meteorological variables such as temperature, humidity, precipitation, and wind speed. These findings highlight that both climatic conditions and the surrounding vegetation, shaped by regional land cover, play a crucial role in determining pollen dynamics. In conclusion, this study provides the first aerobiological baseline for Siirt and contributes valuable data for allergy-risk forecasting and long-term ecological monitoring in southeastern Türkiye. Full article
(This article belongs to the Section Plant Science)
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17 pages, 3082 KiB  
Article
Full-Length Transcriptome Sequencing and hsp Gene Family Analysis Provide New Insights into the Stress Response Mechanisms of Mystus guttatus
by Lang Qin, Xueling Zhang, Yusen Li, Jun Shi, Yu Li, Yaoquan Han, Hui Luo, Dapeng Wang, Yong Lin and Hua Ye
Biology 2025, 14(7), 840; https://doi.org/10.3390/biology14070840 - 10 Jul 2025
Abstract
Mystus guttatus, a second-class protected species in China, has undergone severe population decline due to anthropogenic and environmental pressures, yet conservation efforts are hindered by limited genomic resources and a lack of mechanistic insights into its stress response systems. Here, the first [...] Read more.
Mystus guttatus, a second-class protected species in China, has undergone severe population decline due to anthropogenic and environmental pressures, yet conservation efforts are hindered by limited genomic resources and a lack of mechanistic insights into its stress response systems. Here, the first full-length transcriptome of M. guttatus was generated via SMRT sequencing. A total of 32,647 full-length transcripts were obtained, with an average length of 1783 bp. After structure and function annotation of full-length transcripts, 30,977 genes, 1670 transcription factors (TF), 918 alternative splicing (AS), and 11,830 simple sequence repeats (SSR) were identified. In order to further explore the stress resistance of M. guttatus, 93 genes belonging to the heat shock protein (HSP) family were identified and categorized into HSP70 and HSP90 subgroups. After phylogenetic analysis and selective stress analysis, it was discovered that the hsp family has suffered purifying selection and gene loss, potentially contributing to a decrease in the stress resilience and population of M. guttatus. Using protein interaction network and molecular docking tools, we observed the intricate interplay among HSPs and discovered HSP70-HOP-HSP90 interaction, which is an essential stress response mechanism. Our study sequenced the first full-length transcriptome of M. guttatus to enhance its genomic resources for its conservation and breeding and provide new insights into the future study of stress response mechanisms on M. guttatus. Full article
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12 pages, 6096 KiB  
Article
Conservation of the Threatened Arabian Wolf (Canis lupus arabs) in a Mountainous Habitat in Northwestern Saudi Arabia
by Abdulaziz S. Alatawi
Biology 2025, 14(7), 839; https://doi.org/10.3390/biology14070839 - 9 Jul 2025
Viewed by 107
Abstract
The expansion of human activities can degrade natural habitats, thereby increasing threats to wildlife conservation. The wild populations of many species have declined due to the modification of natural habitats by humans. The Arabian wolf (Canis lupus arabs) is a subspecies [...] Read more.
The expansion of human activities can degrade natural habitats, thereby increasing threats to wildlife conservation. The wild populations of many species have declined due to the modification of natural habitats by humans. The Arabian wolf (Canis lupus arabs) is a subspecies of the gray wolf that is of conservation concern across its distribution range. The Arabian wolf is understudied in certain habitats (e.g., mountainous areas), which limits understanding of its overall ecology. Given its vulnerable conservation status, this study aimed to collect relevant data and information on incidents and potential threats facing this predator in the rugged mountainous habitats of western Tabuk province, Saudi Arabia, and how the effects of these threats can be minimized. In these mountain habitats Arabian wolves encounter various severe threats that challenge relevant conservation efforts. Observations of such threats—some of which result in wolf mortality—represent serious challenges to the survival of wild Arabian wolves. Conflicts with humans and livestock represent considerable threats that must be appropriately managed. Additionally, the potential association between Arabian wolves and free-ranging dogs requires further investigation. Various conservation scenarios and mitigation approaches can be applied to help reduce negative impacts on Arabian wolf populations and maximize their likelihood of survival. Overall, ensuring the persistence of such a unique desert-adapted apex predator in this ecosystem must become a conservation priority. Full article
(This article belongs to the Special Issue Biology, Ecology, Management and Conservation of Canidae)
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23 pages, 1882 KiB  
Review
Epigenetic Drivers of Chemoresistance in Nucleobase and Nucleoside Analog Therapies
by John Kaszycki and Minji Kim
Biology 2025, 14(7), 838; https://doi.org/10.3390/biology14070838 - 9 Jul 2025
Viewed by 135
Abstract
Nucleobase and nucleoside analogs are critical components of antimetabolite chemotherapy treatments used to disrupt DNA replication and induce apoptosis in rapidly proliferating cancer cells. However, the development of resistance to these agents remains a major clinical challenge. This review explores the epigenetic mechanisms [...] Read more.
Nucleobase and nucleoside analogs are critical components of antimetabolite chemotherapy treatments used to disrupt DNA replication and induce apoptosis in rapidly proliferating cancer cells. However, the development of resistance to these agents remains a major clinical challenge. This review explores the epigenetic mechanisms that contribute to acquired chemoresistance, focusing on DNA methylation, histone modifications, and non-coding RNAs (ncRNAs). These epigenetic alterations regulate key processes such as DNA repair, drug metabolism, cell transport, and autophagy, enabling cancer cells to survive and resist therapeutic pressure. We highlight how dysregulation of DNA methyltransferases (DNMTs) and histone acetyltransferases (HATs) modulates expression of transporters (e.g., hENT1, ABCB1), DNA repair enzymes (e.g., Polβ, BRCA1/2), and autophagy-related genes (e.g., CSNK2A1, BNIP3). Furthermore, emerging roles for long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) in regulating nucleoside export and DNA damage response pathways underscore their relevance as therapeutic targets. The interplay of these epigenetic modifications drives resistance to agents such as gemcitabine and 5-fluorouracil across multiple tumor types. We also discuss recent progress in therapeutic interventions, including DNMT and HDAC inhibitors, RNA-based therapeutics, and CRISPR-based epigenome editing. Full article
(This article belongs to the Section Immunology)
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2 pages, 182 KiB  
Correction
Correction: Qi et al. Recent Progress in Rice–Xanthomonas oryzae Interactions. Biology 2025, 14, 471
by Yuting Qi, Qiong Rao, Chenglong Lu, Junyi Gong and Yuxuan Hou
Biology 2025, 14(7), 837; https://doi.org/10.3390/biology14070837 - 9 Jul 2025
Viewed by 39
Abstract
Errors in Table 1 [...] Full article
(This article belongs to the Special Issue Regulatory Mechanisms of Plant Stress Response)
29 pages, 8095 KiB  
Article
Revealing the Improving Effect and Molecular Mechanism of L-Clausenamide in Combating the Acute Lung Injury: Insights from Network Pharmacology, Molecular Docking, and In Vitro Validation
by Yu Fu, Nannan Wang, Jinhai Luo, Yanyi Huang, Baoning Liu, Charles S. Brennan, Baojun Xu and Jincan Luo
Biology 2025, 14(7), 836; https://doi.org/10.3390/biology14070836 - 9 Jul 2025
Viewed by 140
Abstract
Acute lung injury is a severe disease with a high mortality rate, which can result in increased oxidative stress and further mitochondrial damage and cell apoptosis. L-Clausenamide is an amide from the fruit wampee. This study combined network pharmacology, molecular docking, and [...] Read more.
Acute lung injury is a severe disease with a high mortality rate, which can result in increased oxidative stress and further mitochondrial damage and cell apoptosis. L-Clausenamide is an amide from the fruit wampee. This study combined network pharmacology, molecular docking, and in vitro study to elucidate the effect of combating acute lung injury and the underlying mechanism of L-Clausenamide. Network pharmacology indicated that the 152 targets can treat acute lung injury through regulating oxidative stress. Based on PPI analysis and screening of the central target, AKT1 is the key target of the underlying mechanism. KEGG and GO enrichment analysis demonstrated that apoptosis is an important pathway for this curing effect. In the in vitro study, treatment with L-Clausenamide alleviates intracellular ROS accumulation, mitochondrial membrane potential loss, mitochondrial morphological distortion, ATP decrease, and the CASP3 activity. The SPR analysis was performed to validate the binding between AKT1 and L-Clausenamide. The Western blot result showed that L-Clausenamide increases the phosphorylation of Akt and decreases cleavage of CASP3. L-Clausenamide can alleviate lipopolysaccharide (LPS)-induced acute lung injury through targeting AKT1 and show an improvement in mitochondrial abnormality and inhibition against ROS-activated caspase-3-dependent apoptosis activation. Full article
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14 pages, 1182 KiB  
Article
Endocranial Morphology in Metopism
by Silviya Nikolova, Diana Toneva and Gennady Agre
Biology 2025, 14(7), 835; https://doi.org/10.3390/biology14070835 - 9 Jul 2025
Viewed by 56
Abstract
Comparative investigations on homogenous cranial series have demonstrated that metopism is linked to a specific configuration of the cranial vault; however, there are no comparative data concerning the endocranial morphology in this condition. This study aimed to compare the endocranial space in metopic [...] Read more.
Comparative investigations on homogenous cranial series have demonstrated that metopism is linked to a specific configuration of the cranial vault; however, there are no comparative data concerning the endocranial morphology in this condition. This study aimed to compare the endocranial space in metopic and control crania using morphometric analysis and machine learning algorithms. For this purpose, a series of 230 (184 control and 46 metopic) dry crania of contemporary adult Bulgarian males were scanned using an industrial µCT system. The 3D coordinates of 47 landmarks were collected on the endocranial surface. All possible measurements between the landmarks were calculated as Euclidean distances. The resultant 1081 measurements represented the initial dataset, which was reduced to smaller datasets applying different criteria. The derived datasets were used for learning a set of classification models by machine learning algorithms. The morphometric analysis showed that in the metopic crania some segments of the anterior and middle cranial fossae were significantly longer, and the landmark endobregma was significantly closer to the anterior and middle sections of the cranial base. The most accurate model, with a classification accuracy of 85%, was the Naive Bayes one learned on a dataset of 69 attributes assembled after an attribute selection procedure. Full article
(This article belongs to the Section Medical Biology)
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15 pages, 1792 KiB  
Article
The Enhancement of Immunity Gained from Feline Trivalent Vaccines in Mice Using Feline IL-15, IL-23 and Metabolic Regulatory Molecules
by Ruichen Gao, Wei Sun, Danning Zhang, Linhan Zhang, Dafang He, Mengxi Li, Yi Wei, Junjie Peng and Gang Wang
Biology 2025, 14(7), 834; https://doi.org/10.3390/biology14070834 - 9 Jul 2025
Viewed by 71
Abstract
The feline calicivirus, herpesvirus, and panleukopenia viruses are major infections that cause serious diseases in cats; however, current trivalent vaccines have limitations in immune efficacy and their duration of protection. This study assesses the immune-enhancing effects of novel adjuvants (feline IL-15, IL-23, and [...] Read more.
The feline calicivirus, herpesvirus, and panleukopenia viruses are major infections that cause serious diseases in cats; however, current trivalent vaccines have limitations in immune efficacy and their duration of protection. This study assesses the immune-enhancing effects of novel adjuvants (feline IL-15, IL-23, and metabolic modulators) on vaccine responses. Forty mice were randomly assigned to four groups: Group A (composite adjuvants), Group B (metabolic regulatory molecules and Mn adjuvant), Group C1 (Mn adjuvant), and Group C2 (a blank commercial vaccine). The results showed that Group A had significantly higher neutralizing antibody titers against calicivirus post-booster immunization, while both Groups A and B exhibited enhanced antibody responses against the herpesvirus and panleukopenia viruses. Notably, Group A displayed increased proportions of memory T cells, follicular B cells, and activated B cells. These findings suggest that the combination of feline IL-15, IL-23, and metabolic modulators are safe and effective immunoadjuvants for trivalent feline vaccines to promote immune cell differentiation and antibody production, thus representing a promising strategy to optimize vaccine efficacy. Full article
(This article belongs to the Special Issue Immune Response Regulation in Animals)
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13 pages, 3979 KiB  
Article
Comparative Histopathological and Morphometric Analysis of Lung Tissues in Stillborn Cubs of South China Tiger and Amur Tiger
by Le Zhang, Jincheng Yang, Fengping He, Yaohua Yuan, Zhaoyang Liu, Guangyao Geng, Kaixiong Lin, Qunxiu Liu, Dan Liu, Tianlong Liu and Yanchun Xu
Biology 2025, 14(7), 833; https://doi.org/10.3390/biology14070833 - 8 Jul 2025
Viewed by 116
Abstract
This study aimed to determine whether the fetuses experienced hypoxic distress or intra-partum death due to compromised oxygen supply by quantitatively analyzing the lung structures of deceased captive South China Tiger (Panthera tigris amoyensis, SCT) cubs. Furthermore, it investigated the etiology [...] Read more.
This study aimed to determine whether the fetuses experienced hypoxic distress or intra-partum death due to compromised oxygen supply by quantitatively analyzing the lung structures of deceased captive South China Tiger (Panthera tigris amoyensis, SCT) cubs. Furthermore, it investigated the etiology and mechanisms of asphyxia in the deceased cubs and explored potential factors contributing to the high mortality rate of SCT cubs. The research focused on three deceased SCT cubs, using three deceased neonatal Amur Tigers (P. t. altaica, AT) with no inbreeding background as controls. Histological analysis of the cubs’ lungs was conducted using hematoxylin–eosin (H&E) and special staining techniques. The possible causes of death in SCT cubs were evaluated by comparing pulmonary pathological changes and morphological parameters, including alveolar space (P(ASP)) values, mean alveolar linear intercept (Lm), and mean thickness of alveolar septa (Tas). Our research reveals that hypoxia is one of the most significant factors contributing to the mortality of tiger cubs. Additionally, we hypothesize that inbreeding depression may lead to abnormal lung development (e.g., thickening of lung tissue) in SCT cubs. This study lays the foundation for comprehensive investigations into the mortality of highly inbred SCT cubs. Full article
(This article belongs to the Section Zoology)
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19 pages, 612 KiB  
Article
Increased Temporal Variability of Gait in ASD: A Motion Capture and Machine Learning Analysis
by Katharine Goldthorp, Benn Henderson, Pratheepan Yogarajah, Bryan Gardiner, Thomas Martin McGinnity, Brad Nicholas and Dawn C. Wimpory
Biology 2025, 14(7), 832; https://doi.org/10.3390/biology14070832 - 8 Jul 2025
Viewed by 107
Abstract
Motor deficits, including atypical gait, are common in individuals with autism spectrum disorder (ASD), although the precise nature and cause of this co-occurrence is unclear. Because walking is a natural activity and gait timing is a metric that is relatively accessible to measurement, [...] Read more.
Motor deficits, including atypical gait, are common in individuals with autism spectrum disorder (ASD), although the precise nature and cause of this co-occurrence is unclear. Because walking is a natural activity and gait timing is a metric that is relatively accessible to measurement, we explored whether autistic gait could be described solely in terms of the timing of gait parameters. The aim was to establish whether temporal analysis, including machine learning models, could be used as a group classifier between ASD and typically developing (TD) individuals. Thus, we performed a high-resolution temporal analysis of gait on two age-matched groups of male participants: one group with high-functioning ASD and a comparison TD group (each N = 16, age range 7 to 35 years). The primary data were collected using a VICON® 3D motion analysis system. Significant increased temporal variability of all gait parameters tested was observed for the ASD group compared to the TD group (p < 0.001). Further machine learning analysis showed that the temporal variability of gait could be used as a group classifier for ASD. Of the twelve models tested, the best-fitting model type was random forest. The temporal analysis of gait with machine learning algorithms may be useful as a future ASD diagnostic aid. Full article
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43 pages, 25464 KiB  
Article
Exploring the Efficacy and Potential Mechanisms of Topical Periplaneta americana (L.) Extract in Treating Androgenetic Alopecia in a Mouse Model: A Systems Pharmacology and Skin Microbiome Analysis
by Tangfei Guan, Xin Yang, Canhui Hong, Peiyun Xiao, Yongshou Yang, Chenggui Zhang and Zhengchun He
Biology 2025, 14(7), 831; https://doi.org/10.3390/biology14070831 - 8 Jul 2025
Viewed by 97
Abstract
Androgenetic alopecia (AGA), the most prevalent form of hair loss worldwide, faces significant therapeutic challenges due to high costs and limited efficacy of current interventions, necessitating safer and more effective solutions. Periplaneta americana (L.)-derived PA-011, endowed with anti-inflammatory and antioxidant properties, has demonstrated [...] Read more.
Androgenetic alopecia (AGA), the most prevalent form of hair loss worldwide, faces significant therapeutic challenges due to high costs and limited efficacy of current interventions, necessitating safer and more effective solutions. Periplaneta americana (L.)-derived PA-011, endowed with anti-inflammatory and antioxidant properties, has demonstrated notable hair growth-promoting effects in AGA mouse models. This study employed LC-MS/MS, peptidomics, and network pharmacology to characterize PA-011’s chemical composition and predict its potential targets in AGA pathogenesis. Using Western blot and RT-qPCR, PA-011 intervention significantly inhibited inflammatory responses and oxidative stress levels in mouse skin tissues. Concurrently, PA-011 activated the proliferative potential of hair follicle stem cells, as demonstrated by upregulated expression of the cell proliferation marker Ki67, and activated the Wnt/β-catenin signaling pathway in DHT-induced AGA mice. Transcriptomic and metabolomic analyses revealed multi-target effects of PA-011, including modulation of PI3K-Akt/MAPK pathways, pentose phosphate metabolism, and amino acid biosynthesis. 16S rRNA sequencing and metagenomic analysis showed that AGA disrupts skin microbial homeostasis, while PA-011 intervention normalized the microbiota composition. Topical application of PA-011 promoted robust hair regrowth without detectable toxicity in safety assessments. This preclinical study establishes PA-011 as a promising candidate for AGA therapy, warranting further translational investigation. Full article
(This article belongs to the Section Medical Biology)
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31 pages, 9276 KiB  
Article
Annotation of the Extracellular Enveloped Form of Monkeypox Virus for the Design, Screening, Validation, and Simulation of a Chimeric Vaccine Construct
by Mohammad Asrar Izhari, Essa Ajmi Alodeani, Siraj B. Alharthi, Ahmad H. A. Almontasheri, Foton E. Alotaibi, Rakan E. Alotaibi, Wael A. Alghamdi, Osama Abdulaziz, Fahad Alghamdi, Ali Alisaac, Mansoor Alsahag and Ahmed R. A. Gosady
Biology 2025, 14(7), 830; https://doi.org/10.3390/biology14070830 - 8 Jul 2025
Viewed by 109
Abstract
Recent outbreaks caused by hMPXV, especially hMPXV lineages/sub-lineages, represent public health threats necessitating stringent prophylactic measures to ameliorate their colossal impact. The current study annotated the EEV form of hMPXV’s target proteins to formulate a reverse vaccinology-dependent hMPXV multiepitope vaccine. Epitope determination, followed [...] Read more.
Recent outbreaks caused by hMPXV, especially hMPXV lineages/sub-lineages, represent public health threats necessitating stringent prophylactic measures to ameliorate their colossal impact. The current study annotated the EEV form of hMPXV’s target proteins to formulate a reverse vaccinology-dependent hMPXV multiepitope vaccine. Epitope determination, followed by vaccine formulation, was undertaken. The promising formulation was validated for its potential to trigger immune responses immunoinformatically. The MPXV-1-Beta formulation was characterised as a promising candidate based on antigenicity score, physicochemical properties, solubility score, ProSA Z-score, and Ramachandran plot. Docking, normal mode analysis, and molecular dynamic simulation of MPXV-1-Beta with TLRs and MHCs authenticated rigid docking and its efficacy in enhancing immune receptor activation under physiological conditions. MPXV-1-Beta was discerned to trigger a sustained immune response (IR) with a broader average population coverage of 97.526, SD = 12.44. The proposed MPXV-1-Beta candidate showed significant potential. The findings of this study provide a preliminary framework for developing an efficacious hMPXV vaccine; however, extensive in vitro, in vivo, and clinical evaluations are required to substantiate the computational insights. Full article
(This article belongs to the Special Issue Artificial Intelligence Research for Complex Biological Systems)
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17 pages, 3094 KiB  
Article
Urolithin A Protects Ovarian Reserve Via Inhibiting PI3K/Akt Signaling and Preventing Chemotherapy-Induced Follicle Apoptosis
by Weiyong Wang, Ren Zhou, Yong Ruan and Shuhao Fan
Biology 2025, 14(7), 829; https://doi.org/10.3390/biology14070829 - 8 Jul 2025
Viewed by 182
Abstract
Urolithin A, which is a natural gut microbial metabolite, exerts multiple beneficial effects upon supplementation, including prolonging lifespan, mitigating diseases, restoring the quality of aged oocytes and alleviating drug toxicity. The study aims to investigate the ovarian protective role of Urolithin A using [...] Read more.
Urolithin A, which is a natural gut microbial metabolite, exerts multiple beneficial effects upon supplementation, including prolonging lifespan, mitigating diseases, restoring the quality of aged oocytes and alleviating drug toxicity. The study aims to investigate the ovarian protective role of Urolithin A using a neonatal mouse ovarian in vitro culture and chemotherapy model, with a particular focus on its mechanisms for inhibiting primordial follicle activation and mitigating cyclophosphamide (CY) or 4-hydroperoxy (4-HC)-induced follicle apoptosis. The results showed that Urolithin A significantly decreased the number of growing follicles and downregulated the expression of oocyte growth-related genes (Gdf9 and Zp3) and protein (DDX4), as well as Ki-67 and BrdU-positive signals. Further studies revealed that Urolithin A significantly downregulated the levels of phosphorylated Akt and FOXO3a and decreased the percentage of oocytes with FOXO3a nuclear export. Molecular docking showed a strong binding ability between Urolithin A and its downregulated gene Pik3cg. Moreover, Urolithin A significantly decreased CY- and 4-HC-induced increases in cleaved Caspase-3- and PARP1-positive signals. Meanwhile, RNA-seq analysis indicated that Urolithin A significantly downregulated CY-induced expression of DNA damage-related genes (Trp73 and Trim29). In short, Urolithin A inhibits primordial follicle activation by reducing PI3K/Akt signaling reactivity. Furthermore, Urolithin A prevents CY-induced follicle apoptosis. The study provides valuable insights into Urolithin A treatment for chemotherapy-induced infertility. Full article
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20 pages, 5104 KiB  
Article
Effects of the Invasive Common Myna (Acridotheres tristis) on Nest Site Competition and Predation in Native Birds: A Before-After-Control-Impact Study
by Iris Fortoune Engel, Ido Izhaki and Motti Charter
Biology 2025, 14(7), 828; https://doi.org/10.3390/biology14070828 - 8 Jul 2025
Viewed by 245
Abstract
Despite concerns about invasive Common Mynas (Acridotheres tristis), few studies have experimentally demonstrated their impact on native birds. Using a Before-After-Control-Impact (BACI) design with 142 nest boxes, we assessed how Myna presence affected House Sparrows (Passer domesticus) and Great [...] Read more.
Despite concerns about invasive Common Mynas (Acridotheres tristis), few studies have experimentally demonstrated their impact on native birds. Using a Before-After-Control-Impact (BACI) design with 142 nest boxes, we assessed how Myna presence affected House Sparrows (Passer domesticus) and Great Tits (Parus major) before (2009–2010) and after (2020–2021) their arrival in 2015. Half the boxes had large entrances accessible to all three species; half had small entrances accessible only to Great Tits. In a 2022 field experiment, we manipulated nest box entrances and used cameras to study Myna predation and nest usurpation. Following the establishment of Myna, House Sparrow breeding declined by 68.1%. Great Tits increased use of small entrance boxes by 59.9% and decreased use of large entrance boxes by 45.4%. Although overall Great Tit breeding increased, fledging success declined in large entrance boxes, but not small entrance ones. In the 2022 experiment, 46% (n = 26) of Great Tit nests were predated; Common Mynas were responsible for 50% of these cases and subsequently bred in the usurped nests. This study experimentally demonstrates that House Sparrow breeding numbers decrease and that Great Tits change their nesting behavior after the appearance of the Common Myna. Additionally, this research found that Common Mynas impact native species by predating and usurping nests. Installing small-entrance boxes can help manage Great Tit populations. Further research should explore nest box designs for House Sparrows and their impacts on other cavity-nesting and non-cavity-nesting bird species. Full article
(This article belongs to the Section Conservation Biology and Biodiversity)
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18 pages, 3350 KiB  
Article
Distribution of Summer Zooplankton in the Waters off the Kuril Islands (Northwest Pacific) in Relationship with Environmental Conditions
by Valentina Kasyan
Biology 2025, 14(7), 827; https://doi.org/10.3390/biology14070827 - 8 Jul 2025
Viewed by 164
Abstract
This study covers a large area around the Kuril Islands, one of the longest island arcs in the world, crossing several climatic zones, which allows for observations of longitudinal shifts in planktonic species’ ranges following shifts in the boundaries between the climatic zones. [...] Read more.
This study covers a large area around the Kuril Islands, one of the longest island arcs in the world, crossing several climatic zones, which allows for observations of longitudinal shifts in planktonic species’ ranges following shifts in the boundaries between the climatic zones. We analyzed spatial and vertical changes in the zooplankton community structure and the associated environmental factors from Yuri Island to Onekotan Island both in Pacific and Sea of Okhotsk waters, which are influenced by cold and warm water masses. Species diversity in the Pacific waters was higher than in the Sea of Okhotsk waters, with a peak of diversity recorded from warm waters off the southern Kuril Islands associated with the Soya Current and the Kuroshio Extension. Zooplankton abundance and biomass above the thermocline were higher in the Pacific waters compared to the Sea of Okhotsk area, showing a tendency to increase with higher latitude and lower water temperatures and generally to decline with depth. The water temperature and salinity below the thermocline were the most important explanatory environmental variables responsible for zooplankton abundance variations. The distribution patterns of the large-sized copepods were strongly correlated with temperature and salinity, as well as with dissolved oxygen and chlorophyll a levels. In contrast, small-sized copepods were adapted to or thrived in the areas with elevated temperature and salinity values and a reduced chlorophyll a concentration. Full article
(This article belongs to the Special Issue Living Resources of the Deep Sea: Biological Profiles and Environmental Linkages)
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33 pages, 14137 KiB  
Article
Unraveling the Role of Spicules in Shaping Sponge Body Structure: Evidence from the Early Cambrian Shuijingtuo Formation
by Xinyi Ren, Yazhou Hu, Luke C. Strotz, Mei Luo, Caibin Zhang and Zhifei Zhang
Biology 2025, 14(7), 826; https://doi.org/10.3390/biology14070826 - 7 Jul 2025
Viewed by 144
Abstract
In most cases, sponge fossils are preserved as isolated spicules, with complete sponge body fossils largely confined to Konservat-Lagerstätten. Although the classification and diversity of sponges and their isolated spicules have been extensively studied, no systematic attempts have been made to define the [...] Read more.
In most cases, sponge fossils are preserved as isolated spicules, with complete sponge body fossils largely confined to Konservat-Lagerstätten. Although the classification and diversity of sponges and their isolated spicules have been extensively studied, no systematic attempts have been made to define the relationship between fossil spicules and the sponge body plan. By utilizing relatively well-preserved sponge fossils from the black shales of the Shuijingtuo Formation (South China) in conjunction with isolated spicules from the same locality, we assess spicule morphology to identify the potential functional roles of spicules and chart their arrangement within the sponge body. The elemental distribution and three-dimensional morphology of the examined sponge body fossil (likely a hexactinelid) are assessed using both micro-XRF and micro-CT. Tetractine, stauractine and pentactine spicules are the most abundant spicule types, both in the body fossil and in acid residues, with an additional spicule type (monaxons) also present. The larger pentactine spicules (five-ray spicules) frame the structure, whereas the smaller tetractines and stauractines (four-ray spicules), along with smaller pentactines, are arranged along the branches of the larger spicules. Based on the arrangement of the different spicules, it is proposed that each of the spicule types represents a discrete functional form: monaxons support the overall sponge body plan, pentactines construct the framework of the parietal gaps, and the smaller pentactines or tetractines stabilize the framework of the parietal gaps. These results provide a new understanding of sponge morphology, spicule function and the relationship between isolated fossil spicules and associated sponge body fossils. Full article
(This article belongs to the Section Evolutionary Biology)
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20 pages, 1654 KiB  
Article
Circulating Antimicrobial Peptides as Biomarkers of Inflammation and Airway Dysfunction After Marathon Running
by Marie-Therese Lingitz, Hannes Kühtreiber, Lisa Auer, Michael Mildner, Claus G. Krenn, Clemens Aigner, Bernhard Moser, Christine Bekos and Hendrik Jan Ankersmit
Biology 2025, 14(7), 825; https://doi.org/10.3390/biology14070825 - 7 Jul 2025
Viewed by 141
Abstract
Marathon running exerts physical stress and may lead to transient immune dysregulation, increasing susceptibility to airway inflammation and exercise-induced bronchoconstriction (EIB). This study investigated systemic levels of antimicrobial peptides in athletes and their association with EIB. Serum concentrations of angiogenin, human beta-defensin 2 [...] Read more.
Marathon running exerts physical stress and may lead to transient immune dysregulation, increasing susceptibility to airway inflammation and exercise-induced bronchoconstriction (EIB). This study investigated systemic levels of antimicrobial peptides in athletes and their association with EIB. Serum concentrations of angiogenin, human beta-defensin 2 (hBD-2), major basic protein (MBP), S100A8, and S100A8/A9 were measured in 34 marathoners and 36 half-marathoners at baseline, immediately after a race, and seven days postrace using enzyme-linked immunosorbent assays and compared with 30 sedentary controls. Lung function was assessed by spirometry to identify bronchoconstriction. Levels of hBD-2 and S100A8/A9 were significantly elevated postrace in runners compared to baseline and controls, returning to baseline during recovery. During recovery, S100A8 levels remained slightly elevated in marathoners with EIB. Similarly, human beta-defensin 2 was modestly increased in runners who developed bronchoconstriction. Notably, S100A8 levels correlated negatively with lung function parameters, including forced expiratory volume and mid-expiratory flows. These findings suggest that endurance running induces systemic inflammatory responses and modulates innate immune peptides, particularly in individuals prone to bronchoconstriction. These peptides may serve as biomarkers of respiratory stress and help guide personalized strategies in endurance sports. Full article
(This article belongs to the Section Biochemistry and Molecular Biology)
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16 pages, 1041 KiB  
Article
Isolation and Characterization of Cultivable Microbes from the Gut of Zophobas atratus (Coleoptera: Tenebrionidae) Larvae Reared on Two Types of Artificial Diets
by Vladislava Baklanova, Alexander Kuprin, Ivan Baklanov and Vadim Kumeiko
Biology 2025, 14(7), 824; https://doi.org/10.3390/biology14070824 - 7 Jul 2025
Viewed by 205
Abstract
Gut microbes are important for saproxylophagous insects, but little is known about the specific types of microbes that we can grow in the lab and how their diet affects them. We characterized aerobic culturable microbes from the superworm Zophobas atratus larvae reared on [...] Read more.
Gut microbes are important for saproxylophagous insects, but little is known about the specific types of microbes that we can grow in the lab and how their diet affects them. We characterized aerobic culturable microbes from the superworm Zophobas atratus larvae reared on a standard diet (SD) and a fungal-based diet (FD) using the selective plating and 16S rRNA sequencing of isolates. Five functional groups were cultured: amino acid autotrophs, enterobacteria, yeasts, cellulolytic bacteria, and molds. A quantitative assessment revealed distinct diet-dependent patterns: SD-fed larvae showed the dominance of enterobacteria and amino acid autotrophs, while FD-fed larvae exhibited a higher abundance of enterobacteria and yeasts. Mold populations remained minimal under both diets. A phylogenetic analysis of bacterial isolates showed four core bacterial phyla (Pseudomonadota, Actinobacteria, Bacillota, and Bacteroidota) with diet-sensitive genus-level variations. Pseudomonadota dominated both diets, but certain genera were associated with different diets: Micrococcus and Brucella in the SD versus Citrobacter and Pseudomonas in the FD. Shared genera (Klebsiella, Enterobacter, and Bacillus) may represent a core culturable community. These findings demonstrate the influence of diet on culturable gut microbes while highlighting the need for complementary molecular approaches to study unculturable taxa. The isolated strains provide resources for investigating microbial functions in insect nutrition. Full article
(This article belongs to the Special Issue Feeding Biology and Nutrition in Insects)
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14 pages, 3516 KiB  
Article
pH-Sensitive TRPC5 Is Differentially Expressed in Various Common Skin Tumors
by Lara Hopmann, Judith Heider, Dennis Niebel, Katja Evert, Florian Zeman, Christoph M. Hammers, Tobias Ettl, Christoph Brochhausen and Stephan Schreml
Biology 2025, 14(7), 823; https://doi.org/10.3390/biology14070823 - 7 Jul 2025
Viewed by 182
Abstract
Transient receptor potential classical or cation channels (TRPCs) are integral to tumor biology, particularly in maintaining Ca2+ homeostasis within cancer cells. TRPC5, a pH-sensitive member of this family, may act as a signaling molecule in the altered microenvironment of solid tumors, which [...] Read more.
Transient receptor potential classical or cation channels (TRPCs) are integral to tumor biology, particularly in maintaining Ca2+ homeostasis within cancer cells. TRPC5, a pH-sensitive member of this family, may act as a signaling molecule in the altered microenvironment of solid tumors, which are characterized by an inverted pH-gradient—with decreased extracellular and increased intracellular pH—that promotes tumor progression. This study addresses a gap in the field, as there is currently limited research on TRPC5, particularly regarding its potential role as a tumor marker. While TRPCs are known to be involved in cancer biology, the specific role of TRPC5 in solid tumors, including its potential role as a diagnostic marker, remains largely unexplored. This study is the first to examine TRPC5 expression profiles in common skin cancers, including basal cell carcinoma (BCC), squamous cell carcinoma (SCC), malignant melanoma (MM), and nevus cell nevi (NCN). Our findings reveal that the frequency of TRPC5 expression in BCC is significantly lower compared to SCC and epidermal portions of NCN and MM. These results suggest that TRPC5 could serve as an immunohistochemical marker to distinguish SCC from BCC. Additionally, this study lays the groundwork for future research into the role of TRPC5 in tumor progression and metastasis, especially since BCCs, which rarely metastasize, are predominantly negative for TRPC5. Full article
(This article belongs to the Special Issue Ion Channels in Cancer Progression)
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16 pages, 8964 KiB  
Article
The Regulatory Role of EvfG Through Coordinated Control of Flagellar Biosynthesis and Energy Metabolism in Porcine Extraintestinal Pathogenic Escherichia coli (ExPEC)
by Bingbing Zong, Peiyi Wang, Wei Liu, Aihua Wu, Yong Xiao, Shulin Fu, Yinsheng Qiu, Yanyan Zhang and Wentong Liu
Biology 2025, 14(7), 822; https://doi.org/10.3390/biology14070822 - 7 Jul 2025
Viewed by 184
Abstract
In this study, we found that the deletion of the gene evfG in the type VI secretion system (T6SS) gene cluster significantly affected the motility of porcine extraintestinal pathogenic Escherichia coli (ExPEC) strain PCN033. Furthermore, the bacterial motility assay showed that ΔevfG [...] Read more.
In this study, we found that the deletion of the gene evfG in the type VI secretion system (T6SS) gene cluster significantly affected the motility of porcine extraintestinal pathogenic Escherichia coli (ExPEC) strain PCN033. Furthermore, the bacterial motility assay showed that ΔevfG mutants exhibited reduced motility compared to the parental strain. Transmission electron microscopy (TEM) showed a significant reduction in the number of flagella in the mutant ΔevfG when compared with PCN033. To further explore the reasons why the deletion of evfG affects the motility of PCN033, transcriptomic and metabolomic analyses were conducted. The omics analyses showed that 134 differentially accumulated metabolites and 2236 differentially expressed genes were identified between the mutant ΔevfG and the parental strain PCN033. The metabolome profile and functional annotation analyses indicated that the impaired motility of ΔevfG was connected to the downregulation of the expression levels of genes associated with the energy metabolism pathway and flagellar assembly. Our study provides a new insight into the diminished PCN033 motility induced by evfG deletion. Moreover, the candidate genes and metabolites regulated by the gene evfG in the T6SS, which was involved in the motility of PCN033, were reported in this study. Full article
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