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22 Results Found

  • Article
  • Open Access
2 Citations
3,188 Views
14 Pages

Overexpression of the QKI Gene Promotes Differentiation of Goat Myoblasts into Myotubes

  • Sijia Chen,
  • Shu Niu,
  • Wannian Wang,
  • Xiang Zhao,
  • Yangyang Pan,
  • Liying Qiao,
  • Kaijie Yang,
  • Jianhua Liu and
  • Wenzhong Liu

17 February 2023

The QKI genes encode RNA-binding proteins regulating cell proliferation, differentiation, and apoptosis. The Goat QKI has six isoforms, but their roles in myogenesis are unclear. In this study, the six isoforms of the QKI gene were overexpressed in g...

(This article belongs to the Special Issue Featured Papers in the 'Animal Genetics and Genomics' Section)
  • Article
  • Open Access
1,144 Views
17 Pages

QKI Promotes Sheep Preadipocyte Differentiation by Reducing Cavin3 mRNA Stability

  • Zicheng Li,
  • Changsong Xu,
  • Bokang Shan,
  • Yuan Wang,
  • Wangyang Qin,
  • Lei Xia,
  • Liying Qiao,
  • Wenzhong Liu and
  • Yangyang Pan

6 August 2026

Adipogenic differentiation is essential for adipose tissue development, fat deposition, and metabolic regulation in livestock, but the role of RNA-binding proteins in sheep preadipocyte differentiation remains unclear. This study investigated whether...

(This article belongs to the Section Small Ruminants)
  • Feature Paper
  • Article
  • Open Access
9 Citations
5,290 Views
16 Pages

Targeting the RNA-Binding Protein QKI in Myeloid Cells Ameliorates Macrophage-Induced Renal Interstitial Fibrosis

  • Ruben G. de Bruin,
  • Gillian Vogel,
  • Jurrien Prins,
  • Jacques M. J. G. Duijs,
  • Roel Bijkerk,
  • Hendrik J. P. van der Zande,
  • Janine M. van Gils,
  • Hetty C. de Boer,
  • Ton J. Rabelink and
  • Stéphane Richard
  • + 2 authors

In the pathophysiologic setting of acute and chronic kidney injury, the excessive activation and recruitment of blood-borne monocytes prompts their differentiation into inflammatory macrophages, a process that leads to progressive glomerulosclerosis...

  • Review
  • Open Access
10 Citations
4,646 Views
13 Pages

Alternative Splicing: A Key Mediator of Diabetic Vasculopathy

  • Victoria A. Cornelius,
  • Jenna R. Fulton and
  • Andriana Margariti

27 August 2021

Cardiovascular disease is the leading cause of death amongst diabetic individuals. Atherosclerosis is the prominent driver of diabetic vascular complications, which is triggered by the detrimental effects of hyperglycemia and oxidative stress on the...

(This article belongs to the Special Issue Alternative Splicing in Human Physiology and Disease)
  • Article
  • Open Access
14 Citations
5,444 Views
12 Pages

26 February 2019

A set of tissue-specific splicing factors are thought to govern alternative splicing events during neural progenitor cell (NPC)-to-neuron transition by regulating neuron-specific exons. Here, we propose one such factor, RNA-binding protein Quaking 5...

(This article belongs to the Special Issue Pre-mRNA Splicing 2018)
  • Review
  • Open Access
19 Citations
4,174 Views
16 Pages

RNA-Binding Proteins: Emerging Therapeutics for Vascular Dysfunction

  • Victoria A. Cornelius,
  • Hojjat Naderi-Meshkin,
  • Sophia Kelaini and
  • Andriana Margariti

11 August 2022

Vascular diseases account for a significant number of deaths worldwide, with cardiovascular diseases remaining the leading cause of mortality. This ongoing, ever-increasing burden has made the need for an effective treatment strategy a global priorit...

(This article belongs to the Special Issue Advances in iPSC-Based Disease Modeling: From Two Dimensional Monolayers to Organoids)
  • Article
  • Open Access
24 Citations
3,482 Views
18 Pages

Androgen-Independent Prostate Cancer Is Sensitive to CDC42-PAK7 Kinase Inhibition

  • Hyunho Han,
  • Cheol Keun Park,
  • Young-Deuk Choi,
  • Nam Hoon Cho,
  • Jongsoo Lee and
  • Kang Su Cho

Prostate cancer is a common form of cancer in men, and androgen-deprivation therapy (ADT) is often used as a first-line treatment. However, some patients develop resistance to ADT, and their disease is called castration-resistant prostate cancer (CRP...

(This article belongs to the Special Issue 10th Anniversary of Biomedicines—Advances in Prostate Cancer: Science Discovery, Drug Resistance, Biomarkers, and Beyond)
  • Article
  • Open Access
17 Citations
3,314 Views
15 Pages

Comparison of MicroRNA Transcriptomes Reveals the Association between MiR-148a-3p Expression and Rumen Development in Goats

  • Tao Zhong,
  • Cheng Wang,
  • Jiangtao Hu,
  • Xiaoyong Chen,
  • Lili Niu,
  • Siyuan Zhan,
  • Linjie Wang,
  • Jiazhong Guo,
  • Jiaxue Cao and
  • Hongping Zhang
  • + 1 author

23 October 2020

The rumen is an important digestive organ of ruminants. From the fetal to adult stage, the morphology, structure and function of the rumen change significantly. However, the knowledge of the intrinsic genetic regulation of these changes is still limi...

(This article belongs to the Section Small Ruminants)
  • Review
  • Open Access
11 Citations
4,499 Views
16 Pages

4 December 2024

Alternative splicing allows a single gene to produce a variety of protein isoforms. Changes in splicing isoform usage characterize virtually every stage of the differentiation process and define the physiological differences between cardiomyocytes wi...

(This article belongs to the Section Molecular Pathology, Diagnostics, and Therapeutics)
  • Article
  • Open Access
4 Citations
3,131 Views
13 Pages

Transcriptomic Alterations in Spliceosome Components in Advanced Heart Failure: Status of Cardiac-Specific Alternative Splicing Factors

  • Isaac Giménez-Escamilla,
  • Lorena Pérez-Carrillo,
  • Irene González-Torrent,
  • Marta Delgado-Arija,
  • Carlota Benedicto,
  • Manuel Portolés,
  • Estefanía Tarazón and
  • Esther Roselló-Lletí

4 September 2024

Heart failure (HF) is associated with global changes in gene expression. Alternative mRNA splicing (AS) is a key regulatory mechanism underlying these changes. However, the whole status of molecules involved in the splicing process in human HF is unk...

(This article belongs to the Section Molecular Pathology, Diagnostics, and Therapeutics)
  • Article
  • Open Access
8 Citations
4,873 Views
14 Pages

First Identification of RNA-Binding Proteins That Regulate Alternative Exons in the Dystrophin Gene

  • Julie Miro,
  • Anne-Laure Bougé,
  • Eva Murauer,
  • Emmanuelle Beyne,
  • Dylan Da Cunha,
  • Mireille Claustres,
  • Michel Koenig and
  • Sylvie Tuffery-Giraud

21 October 2020

The Duchenne muscular dystrophy (DMD) gene has a complex expression pattern regulated by multiple tissue-specific promoters and by alternative splicing (AS) of the resulting transcripts. Here, we used an RNAi-based approach coupled with DMD-targeted...

(This article belongs to the Section Molecular Biology)
  • Article
  • Open Access
11 Citations
3,766 Views
14 Pages

Global Gene Expression Characterization of Circulating Tumor Cells in Metastasic Castration-Resistant Prostate Cancer Patients

  • Luis León-Mateos,
  • Alicia Abalo,
  • Helena Casas,
  • Urbano Anido,
  • Óscar Rapado-González,
  • María Vieito,
  • Mercedes Suárez-Cunqueiro,
  • Antonio Gómez-Tato,
  • Miguel Abal and
  • Laura Muinelo-Romay
  • + 1 author

Background: Current therapeutic options in the course of metastatic castration-resistant prostate cancers (mCRPC) reinforce the need for reliable tools to characterize the tumor in a dynamic way. Circulating tumor cells (CTCs) have emerged as a viabl...

(This article belongs to the Special Issue New Advances for the Application of Liquid Biopsies to Manage Cancer Patients)
  • Article
  • Open Access
20 Citations
4,646 Views
21 Pages

Different drug combinations including irinotecan remain some of the most important therapeutic modalities in treating colorectal cancer (CRC). However, chemotherapy often leads to the acquisition of cancer drug resistance. To bridge the gap between i...

(This article belongs to the Special Issue Omics Data Analysis and Integration in Complex Diseases)
  • Article
  • Open Access
16 Citations
3,875 Views
26 Pages

Novel Insights into circRNA Saga Coming from Spermatozoa and Epididymis of HFD Mice

  • Francesco Manfrevola,
  • Teresa Chioccarelli,
  • Vincenza Grazia Mele,
  • Veronica Porreca,
  • Monica Mattia,
  • Donatella Cimini,
  • Antonella D’Agostino,
  • Gilda Cobellis,
  • Silvia Fasano and
  • Riccardo Pierantoni
  • + 2 authors

Obesity is a pathophysiological disorder associated with adiposity accumulation, oxidative stress, and chronic inflammation state that is progressively increasing in younger population worldwide, negatively affecting male reproductive skills. An emer...

(This article belongs to the Special Issue Novel Insights into the Biology of Spermatozoa 2.0)
  • Article
  • Open Access
22 Citations
5,156 Views
12 Pages

Genome-Wide Assessment of Runs of Homozygosity by Whole-Genome Sequencing in Diverse Horse Breeds Worldwide

  • Chujie Chen,
  • Bo Zhu,
  • Xiangwei Tang,
  • Bin Chen,
  • Mei Liu,
  • Ning Gao,
  • Sheng Li and
  • Jingjing Gu

1 June 2023

In the genomes of diploid organisms, runs of homozygosity (ROH), consecutive segments of homozygosity, are extended. ROH can be applied to evaluate the inbreeding situation of individuals without pedigree data and to detect selective signatures via R...

(This article belongs to the Special Issue Equine Genetics and Genomics)
  • Article
  • Open Access
240 Views
27 Pages

HSP27 Provides Stress-Adaptive Proteostasis Buffering in Glioblastoma and Is Therapeutically Vulnerable

  • Yuexia Jiao,
  • Qi Liu,
  • Yuchun Zhang,
  • Xiuyuan Wang,
  • Xinjun Liang,
  • Shaozhong Wei and
  • Zijian Tang

30 September 2026

Glioblastoma, isocitrate dehydrogenase (IDH)-wildtype (GBM), remains one of the most aggressive primary brain tumors, and its proteostasis machinery represents a potential therapeutic target. Here we identify HSP27 as a key regulator-associated prote...

(This article belongs to the Topic Proteomics of Cells and Tissues in Atherosclerosis and Cancer)
  • Article
  • Open Access
9 Citations
2,782 Views
19 Pages

Plant miR8126-3p and miR8126-5p Decrease Lipid Accumulation through Modulation of Metabolic Genes in a Human Hepatocyte Model That Mimics Steatosis

  • Ester Díez-Sainz,
  • Paula Aranaz,
  • Ez-Zoubir Amri,
  • José I. Riezu-Boj,
  • Silvia Lorente-Cebrián and
  • Fermín I. Milagro

31 January 2024

Plant-based food interventions are promising therapeutic approaches for non-alcoholic fatty liver disease (NAFLD) treatment, and microRNAs (miRNAs) have emerged as functional bioactive components of dietary plants involved in cross-kingdom communicat...

(This article belongs to the Special Issue Energy Metabolism and Obesity)
  • Article
  • Open Access
2 Citations
1,848 Views
21 Pages

Pancreatic ductal adenocarcinoma (PDAC) is one of the most lethal cancer types due to its late diagnosis, low survival rates, and high frequency of metastasis. Considering the molecular mechanism of PDAC development has not been fully elucidated, thi...

(This article belongs to the Special Issue The Significance of Transcription Factors, miRNAs, and lncRNAs in Anticancer Drug Development, 2nd Edition)
  • Article
  • Open Access
48 Citations
11,180 Views
15 Pages

CirComPara: A Multi‐Method Comparative Bioinformatics Pipeline to Detect and Study circRNAs from RNA‐seq Data

  • Enrico Gaffo,
  • Annagiulia Bonizzato,
  • Geertruy Te Kronnie and
  • Stefania Bortoluzzi

Circular RNAs (circRNAs) are generated by backsplicing of immature RNA forming covalently closed loops of intron/exon RNA molecules. Pervasiveness, evolutionary conservation, massive and regulated expression, and posttranscriptional regulator...

(This article belongs to the Special Issue Bioinformatics Softwares and Databases for Non-Coding RNA Research)
  • Article
  • Open Access
1,912 Views
18 Pages

Non-Coding RNA Biomarkers in Prostate Cancer: Evidence Mapping and In Silico Characterization

  • Lorena Albarracín-Navas,
  • Nicolás I. Lara-Salas,
  • Javier H. Alarcon-Roa,
  • Maylin Almonte-Becerril,
  • Enmanuel Guerrero and
  • Ángela L. Riffo-Campos

8 January 2026

Non-coding RNAs (ncRNAs) have emerged as promising biomarkers for prostate cancer (PCa), yet evidence remains dispersed across heterogeneous studies and their regulatory context is seldom analyzed in an integrated manner. This study systematically ma...

(This article belongs to the Special Issue Prostate Cancer: 4th Edition)
  • Article
  • Open Access
4 Citations
2,197 Views
20 Pages

Mutational Profile of Blood and Tumor Tissue and Biomarkers of Response to PD-1 Inhibitors in Patients with Cutaneous Squamous Cell Carcinoma

  • Mark J. Chang,
  • Daniel B. Stamos,
  • Cetin Urtis,
  • Nathan L. Bowers,
  • Lauren M. Schmalz,
  • Logan J. Deyo,
  • Martin F. Porebski,
  • Abdur Rahman Jabir,
  • Paul M. Bunch and
  • Mercedes Porosnicu
  • + 7 authors

31 March 2025

Background/Objectives: Cutaneous squamous cell carcinoma (cSCC) harbors one of the most mutated genomes. There are limited data on the genomic profile and its predictive potential for response to immunotherapy with PD-1 inhibitors in cSCC. Methods: T...

(This article belongs to the Section Cancer Biomarkers)
  • Article
  • Open Access
7 Citations
3,820 Views
17 Pages

The 3′ Non-Coding Sequence Negatively Regulates PD-L1 Expression, and Its Regulators Are Systematically Identified in Pan-Cancer

  • Zike Chen,
  • Hui Pi,
  • Wen Zheng,
  • Xiaohong Guo,
  • Conglin Shi,
  • Zhiyang Wang,
  • Jie Zhang,
  • Xuanhao Qu,
  • Lehan Liu and
  • Yihui Fan
  • + 5 authors

13 August 2023

The 3′-untranslated region (3′-UTR) of PD-L1 is significantly longer than the coding sequences (CDSs). However, its role and regulators have been little studied. We deleted whole 3′-UTR region by CRISPR-Cas9. Prognostic analysis was...

(This article belongs to the Section Molecular Genetics and Genomics)