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29 Results Found

  • Article
  • Open Access
8 Citations
2,809 Views
19 Pages

LncRNA NR_003508 Suppresses Mycobacterium tuberculosis-Induced Programmed Necrosis via Sponging miR-346-3p to Regulate RIPK1

  • Li Liu,
  • Zhirui Yu,
  • Qinmei Ma,
  • Jialin Yu,
  • Zhaoqian Gong,
  • Guangcun Deng and
  • Xiaoling Wu

Emerging evidence suggests that long non-coding RNAs (LncRNAs) are involved in Mtb-induced programmed necrosis. Among these LncRNAs, LncRNA NR_003508 is associated with LPS-induced acute respiratory distress syndrome. However, whether LncRNA NR_00350...

  • Article
  • Open Access
4 Citations
2,595 Views
16 Pages

The Long Non-Coding RNA MALAT1 Modulates NR4A1 Expression through a Downstream Regulatory Element in Specific Cancer Cell Types

  • Sara Wernig-Zorc,
  • Uwe Schwartz,
  • Paulina Martínez-Rodríguez,
  • Josefa Inalef,
  • Francisca Pavicic,
  • Pamela Ehrenfeld,
  • Gernot Längst and
  • Rodrigo Maldonado

Long non-coding RNAs (lncRNAs) have been shown to modulate gene expression and are involved in the initiation and progression of various cancer types. Despite the wealth of studies describing transcriptome changes upon lncRNA knockdown, there is limi...

  • Article
  • Open Access
1 Citations
2,701 Views
20 Pages

LncRNA NR120519 Blocks KRT17 to Promote Cell Proliferation and Migration in Hypopharyngeal Squamous Carcinoma

  • Zheng Zhou,
  • Gehou Zhang,
  • Tieqi Li,
  • Jingang Ai,
  • Wei Li,
  • Shiyu Zeng,
  • Maoyu Ye,
  • Qian Liu,
  • Jian Xiao and
  • Xiaowei Zhang
  • + 2 authors

18 January 2023

Background: Hypopharyngeal carcinoma is the worst type of head and neck squamous cell carcinoma. It is necessary to identify the key molecular targets related to the carcinogenesis and development of hypopharyngeal carcinoma. Methods: Differentially...

  • Article
  • Open Access
7 Citations
3,969 Views
27 Pages

TGF-β-Upregulated Lnc-Nr6a1 Acts as a Reservoir of miR-181 and Mediates Assembly of a Glycolytic Complex

  • Salvador Polo-Generelo,
  • Belén Torres,
  • José A. Guerrero-Martínez,
  • Emilio Camafeita,
  • Jesús Vázquez,
  • José C. Reyes and
  • José A. Pintor-Toro

15 September 2022

Long non-coding RNAs (lncRNAs) have emerged as key regulators in a wide range of biological processes. Here, we identified a mouse miRNA-host gene lncRNA (Lnc-Nr6a1) upregulated early during epithelial-to-mesenchymal transition (EMT). We show that wh...

  • Review
  • Open Access
1 Citations
4,169 Views
21 Pages

22 August 2024

Long non-coding RNAs (lncRNAs) play key roles in various epigenetic and post-transcriptional events in the cell, thereby significantly influencing cellular processes including gene expression, development and diseases such as cancer. Nuclear receptor...

  • Article
  • Open Access
4 Citations
2,777 Views
16 Pages

Background: Long noncoding RNAs (LncRNAs) play critical roles in many respiratory diseases. Acute respiratory distress syndrome (ARDS) is a destructive clinical syndrome of respiratory diseases. However, the potential mechanism of LncRNAs on ARDS rem...

  • Article
  • Open Access
1 Citations
1,354 Views
13 Pages

Transcriptome-Wide Analysis of N6-Methyladenosine-Modified Long Noncoding RNAs in Particulate Matter-Induced Lung Injury

  • Yingying Zeng,
  • Guiping Zhu,
  • Wenjun Peng,
  • Hui Cai,
  • Chong Lu,
  • Ling Ye,
  • Meiling Jin and
  • Jian Wang

27 January 2025

Background: N6-methyladenosine (m6A) modification plays a crucial role in the regulation of diverse cellular processes influenced by environmental factors. Nevertheless, the involvement of m6A-modified long noncoding RNAs (lncRNAs) in the pathogenesi...

  • Review
  • Open Access
99 Citations
9,623 Views
19 Pages

The Roles and Mechanisms of lncRNAs in Liver Fibrosis

  • Zhi He,
  • Deying Yang,
  • Xiaolan Fan,
  • Mingwang Zhang,
  • Yan Li,
  • Xiaobin Gu and
  • Mingyao Yang

21 February 2020

Many studies have revealed that circulating long noncoding RNAs (lncRNAs) regulate gene and protein expression in the process of hepatic fibrosis. Liver fibrosis is a reversible wound healing response followed by excessive extracellular matrix accumu...

  • Article
  • Open Access
4 Citations
2,610 Views
17 Pages

3 August 2022

Brain microvascular endothelial cells (BMECs) linked by tight junctions play important roles in cerebral ischemia. Intercellular signaling via extracellular vesicles (EVs) is an underappreciated mode of cell–cell crosstalk. This study aims to e...

  • Article
  • Open Access
11 Citations
3,726 Views
20 Pages

15 December 2020

In highly metastatic tumors, vasculogenic mimicry (VM) involves the acquisition by tumor cells of endothelial-like traits. Poly-(ADP-ribose) polymerase (PARP) inhibitors are currently used against tumors displaying BRCA1/2-dependent deficient homolog...

  • Article
  • Open Access
12 Citations
3,433 Views
14 Pages

Transcriptome Sequencing to Identify Important Genes and lncRNAs Regulating Abdominal Fat Deposition in Ducks

  • Chunyan Yang,
  • Zhixiu Wang,
  • Qianqian Song,
  • Bingqiang Dong,
  • Yulin Bi,
  • Hao Bai,
  • Yong Jiang,
  • Guobin Chang and
  • Guohong Chen

13 May 2022

Abdominal fat deposition is an important trait in meat-producing ducks. F2 generations of 304 Cherry Valley and Runzhou Crested White ducks were studied to identify genes and lncRNAs affecting abdominal fat deposition. RNA sequencing was used to stud...

  • Article
  • Open Access
5 Citations
2,168 Views
21 Pages

27 August 2022

Root restriction is a physical and ecological cultivation mode which restricts plant roots into a limited container to regulate vegetative and reproduction growth by reshaping root architecture. However, little is known about related molecular mechan...

  • Article
  • Open Access
4 Citations
1,923 Views
15 Pages

Expression Profiling of Coding and Noncoding RNAs in the Endometrium of Patients with Endometriosis

  • Mi Ran Choi,
  • Hye Jin Chang,
  • Jeong-Hyeon Heo,
  • Sun Hyung Yum,
  • Eunae Jo,
  • Miran Kim and
  • Sang-Rae Lee

1 October 2024

The aim of this study was to identify differentially expressed lncRNAs (DElncRNAs) and mRNAs (DEmRNAs) in the endometrium of individuals with and without endometriosis (EMS) during the proliferative (P) and secretory (S) phases of the menstrual cycle...

  • Review
  • Open Access
13 Citations
2,756 Views
10 Pages

Emerging Evidence of Noncoding RNAs in Bleb Scarring after Glaucoma Filtration Surgery

  • Sabrina Yu,
  • Alex L. C. Tam,
  • Robert Campbell and
  • Neil Renwick

12 April 2022

Purpose: To conduct a narrative review of research articles on the potential anti- and pro-fibrotic mechanisms of noncoding RNAs following glaucoma filtration surgery. Methods: Keyword searches of PubMed, and Medline databases were conducted for arti...

  • Article
  • Open Access
7 Citations
3,360 Views
20 Pages

lncRNA Sequencing Reveals Neurodegeneration-Associated FUS Mutations Alter Transcriptional Landscape of iPS Cells That Persists in Motor Neurons

  • Vincent E. Provasek,
  • Manohar Kodavati,
  • Wenting Guo,
  • Haibo Wang,
  • Istvan Boldogh,
  • Ludo Van Den Bosch,
  • Gavin Britz and
  • Muralidhar L. Hegde

16 October 2023

Fused-in sarcoma (FUS) gene mutations have been implicated in amyotrophic lateral sclerosis (ALS). This study aimed to investigate the impact of FUS mutations (R521H and P525L) on the transcriptome of induced pluripotent stem cells (iPSCs) and iPSC-d...

  • Article
  • Open Access
743 Views
22 Pages

Correlation of Coding and Non-Coding RNAs on the Fat Deposition of Yaks Under Different Feeding Systems

  • Lin Xiong,
  • Jie Pei,
  • Shaoke Guo,
  • Mengli Cao,
  • Zhiqiang Ding,
  • Yandong Kang,
  • Xiaoyun Wu and
  • Xian Guo

The yak is a classic grazing livestock species on the Qinghai–Tibet Plateau, and fat deposition is indispensable for its survival and metabolism. Coding and non-coding RNAs (ncRNAs) play an important role in regulating fat deposition in livesto...

  • Article
  • Open Access
2 Citations
1,893 Views
14 Pages

Full-Length Transcriptome Construction and Systematic Characterization of Virulence Factor-Associated Isoforms in Vairimorpha (Nosema) Ceranae

  • Sijia Guo,
  • He Zang,
  • Xiaoyu Liu,
  • Xin Jing,
  • Zhitan Liu,
  • Wende Zhang,
  • Mengyi Wang,
  • Yidi Zheng,
  • Zhengyuan Li and
  • Rui Guo
  • + 3 authors

23 August 2024

Vairimorpha (Nosema) ceranae is a single-cellular fungus that obligately infects the midgut epithelial cells of adult honeybees, causing bee microsporidiosis and jeopardizing bee health and production. This work aims to construct the full-length tran...

  • Article
  • Open Access
11 Citations
3,929 Views
15 Pages

Increasing numbers of miRNAs have been observed as oncogenes or tumor suppressors in colorectal cancer (CRC). It was recently reported that hsa-miR-106b-5p (miR-106b) promoted CRC cell migration and invasion. However, there were also studies showing...

  • Article
  • Open Access
13 Citations
3,659 Views
13 Pages

29 March 2021

Rhododendronsimsii is one of the top ten famous flowers in China. Due to its historical value and high aesthetic, it is widely popular among Chinese people. Various colors are important breeding objectives in Rhododendron L. The understanding of the...

  • Article
  • Open Access
1 Citations
1,374 Views
16 Pages

Lead Induces Mitochondrial Dysregulation in SH-SY5Y Neuroblastoma Cells via a lncRNA/circRNA–miRNA–mRNA Interdependent Networks

  • Yu Wang,
  • Xuefeng Shen,
  • Ruili Guan,
  • Zaihua Zhao,
  • Tao Wang,
  • Yang Zhou,
  • Xiaoming Chen,
  • Jianbin Zhang,
  • Wenjing Luo and
  • Kejun Du

Lead (Pb) exposure poses a significant public health concern due to its neurotoxic effects. While mitochondrial dysfunction is implicated in lead neurotoxicity, the precise molecular mechanisms, particularly the role of non-coding RNA-mediated compet...

  • Article
  • Open Access
8 Citations
3,432 Views
23 Pages

8 August 2020

Madhuca pasquieri (Dubard) Lam. is a tree on the International Union for Conservation of Nature Red List and a national key protected wild plant (II) of China, known for its seed oil and timber. However, lacking of genomic and transcriptome data for...

  • Article
  • Open Access
4 Citations
2,103 Views
12 Pages

22 May 2024

Neocaridina denticulata sinensis has emerged as a promising model organism for basic studies in Decapod. However, the current transcriptome information on this species is based on next-generation sequencing technologies, which are limited by a short...

  • Article
  • Open Access
1,060 Views
12 Pages

Comprehensive Transcriptome Sequencing and Analysis of Euspira gilva: Insights into Aquaculture and Conservation

  • Zhixing Su,
  • Jiayuan Xu,
  • Xiaokang Lv,
  • Xuefeng Song,
  • Yanming Sui,
  • Benjian Wang,
  • Xiaoshan Wang,
  • Bianbian Zhang,
  • Baojun Tang and
  • Liguo Yang

28 November 2024

Euspira gilva, a member of the family Naticidae, is predominantly found in intertidal soft mud, sandy soil, and sandy seabeds along the coast of China, where it is valued for its nutritional richness and significant economic value. This study present...

  • Article
  • Open Access
3 Citations
2,728 Views
16 Pages

29 November 2023

The Chinese soft-shelled turtle (Pelodiscus sinensis), an economically important aquatic species in China, displays considerable sexual dimorphism: the male P. sinensis is larger and, thus, more popular in the market. In this study, we obtained the f...

  • Article
  • Open Access
4 Citations
2,756 Views
15 Pages

The Promotion of Humoral Immune Responses in Humans via SOCS1-Mediated Th2-Bias Following SARS-CoV-2 Vaccination

  • Xiaoyu Liu,
  • Junyong Han,
  • Renjie Cui,
  • Meifang Peng,
  • Huaidong Song,
  • Rui Li and
  • Gang Chen

20 November 2023

The effectiveness of SARS-CoV-2 vaccines varies among individuals. During the COVID-19 global pandemic, SARS-CoV-2 infection showed significant Th1 characteristics, suggesting that the immune disorder and production of SARS-CoV-2 antibodies may be re...

  • Article
  • Open Access
2 Citations
2,191 Views
17 Pages

Construction of a Full-Length Transcriptome of Western Honeybee Midgut Tissue and Improved Genome Annotation

  • He Zang,
  • Sijia Guo,
  • Shunan Dong,
  • Yuxuan Song,
  • Kunze Li,
  • Xiaoxue Fan,
  • Jianfeng Qiu,
  • Yidi Zheng,
  • Haibin Jiang and
  • Rui Guo
  • + 3 authors

1 June 2024

Honeybees are an indispensable pollinator in nature with pivotal ecological, economic, and scientific value. However, a full-length transcriptome for Apis mellifera, assembled with the advanced third-generation nanopore sequencing technology, has yet...

  • Article
  • Open Access
5 Citations
2,861 Views
44 Pages

31 March 2025

Diabetic cardiomyopathy (DCM), a critical complication of type 2 diabetes mellitus (T2DM), is marked by metabolic dysfunction, oxidative stress, and chronic inflammation, ultimately progressing to heart failure. This study investigated the synergisti...

  • Article
  • Open Access
419 Views
15 Pages

22 December 2025

Objective: This study aims to investigate the functional role of lncRNA STX17-DT, which was previously found to be upregulated in peripheral blood mononuclear cells (PBMCs) of PBC patients, by examining its impact on gene expression and cellular beha...

  • Article
  • Open Access
2 Citations
2,486 Views
17 Pages

Full-Length Transcriptome Sequencing Analysis and Characterization of WRKY Transcription Factors Responsive to Cadmium Stress in Arabis paniculata

  • Tianjiao Chen,
  • Dan Zuo,
  • Jie Yu,
  • Yunyan Hou,
  • Hongcheng Wang,
  • Lei Gu,
  • Bin Zhu,
  • Huinan Wang and
  • Xuye Du

6 November 2023

Arabis paniculata is a newly discovered hyperaccumulator known for its ability to accumulate multiple metals. WRKY proteins play a significant role in plant responses to various stresses, including cadmium (Cd) stress. However, there is limited resea...