Diversity

21 pages, 4879 KiB

Open AccessEditor’s ChoiceArticle

Roadside Car Surveys: Methodological Constraints and Solutions for Estimating Parrot Abundances across the World

by José L. Tella, Pedro Romero-Vidal, Francisco V. Dénes, Fernando Hiraldo, Bernardo Toledo, Federica Rossetto, Guillermo Blanco, Dailos Hernández-Brito, Erica Pacífico, José A. Díaz-Luque, Abraham Rojas, Alan Bermúdez-Cavero, Álvaro Luna, Jomar M. Barbosa and Martina Carrete

Diversity 2021, 13(7), 300; https://doi.org/10.3390/d13070300 - 1 Jul 2021

Cited by 15 | Viewed by 5847

Abstract

Parrots stand out among birds because of their poor conservation status and the lack of available information on their population sizes and trends. Estimating parrot abundance is complicated by the high mobility, gregariousness, patchy distributions, and rarity of many species. Roadside car surveys [...] Read more.

Parrots stand out among birds because of their poor conservation status and the lack of available information on their population sizes and trends. Estimating parrot abundance is complicated by the high mobility, gregariousness, patchy distributions, and rarity of many species. Roadside car surveys can be useful to cover large areas and increase the probability of detecting spatially aggregated species or those occurring at very low densities. However, such surveys may be biased due to their inability to handle differences in detectability among species and habitats. We conducted 98 roadside surveys, covering > 57,000 km across 20 countries and the main world biomes, recording ca. 120,000 parrots from 137 species. We found that larger and more gregarious species are more easily visually detected and at greater distances, with variations among biomes. However, raw estimates of relative parrot abundances (individuals/km) were strongly correlated (r = 0.86–0.93) with parrot densities (individuals/km²) estimated through distance sampling (DS) models, showing that variability in abundances among species (>40 orders of magnitude) overcomes any potential detectability bias. While both methods provide similar results, DS cannot be used to study parrot communities or monitor the population trends of all parrot species as it requires a minimum of encounters that are not reached for most species (64% in our case), mainly the rarest and more threatened. However, DS may be the most suitable choice for some species-specific studies of common species. We summarize the strengths and weaknesses of both methods to guide researchers in choosing the best–fitting option for their particular research hypotheses, characteristics of the species studied, and logistical constraints. Full article

(This article belongs to the Special Issue Ecology and Conservation of Parrots in Their Native and Non-Native Ranges)

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15 pages, 933 KiB

Open AccessFeature PaperEditor’s ChoiceReview

Of Necks, Trunks and Tails: Axial Skeletal Diversity among Vertebrates

by Moisés Mallo

Diversity 2021, 13(7), 289; https://doi.org/10.3390/d13070289 - 24 Jun 2021

Cited by 10 | Viewed by 6831

Abstract

The axial skeleton of all vertebrates is composed of individual units known as vertebrae. Each vertebra has individual anatomical attributes, yet they can be classified in five different groups, namely cervical, thoracic, lumbar, sacral and caudal, according to shared characteristics and their association [...] Read more.

The axial skeleton of all vertebrates is composed of individual units known as vertebrae. Each vertebra has individual anatomical attributes, yet they can be classified in five different groups, namely cervical, thoracic, lumbar, sacral and caudal, according to shared characteristics and their association with specific body areas. Variations in vertebral number, size, morphological features and their distribution amongst the different regions of the vertebral column are a major source of the anatomical diversity observed among vertebrates. In this review I will discuss the impact of those variations on the anatomy of different vertebrate species and provide insights into the genetic origin of some remarkable morphological traits that often serve to classify phylogenetic branches or individual species, like the long trunks of snakes or the long necks of giraffes. Full article

(This article belongs to the Special Issue Evolution, Development, and Diversification of Vertebrates)

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15 pages, 2683 KiB

Open AccessEditor’s ChoiceArticle

Spatial Distribution Patterns of Appendicularians in the Drake Passage: Potential Indicators of Water Masses?

by Marcin Kalarus and Anna Panasiuk

Diversity 2021, 13(7), 286; https://doi.org/10.3390/d13070286 - 23 Jun 2021

Cited by 5 | Viewed by 2726

Abstract

Appendicularians are one of the most common animals found within zooplankton assemblages. They play a very important role as filter feeders but are, unfortunately, inconsistently reported in the Antarctic literature. The present paper attempts to describe the zonal diversity of appendicularians and the [...] Read more.

Appendicularians are one of the most common animals found within zooplankton assemblages. They play a very important role as filter feeders but are, unfortunately, inconsistently reported in the Antarctic literature. The present paper attempts to describe the zonal diversity of appendicularians and the main environmental factors influencing their communities in the Drake Passage. Samples were collected during Antarctic summer in 2009–2010. A total of eight species of larvaceans were identified. Fritillaria borealis was the species found in the highest numbers in almost the entire studied area, and was observed at all sampling stations. The distributions of other taxa were limited to specific hydrological zones and hydrological conditions. F. fraudax and Oikopleura gaussica were typical of the areas between the Polar Front and the Subantarctic Front zones, and their distributions were significantly correlated with temperature and salinity, likely making them good indicator species. The F. fusiformis distribution was strictly related to South American waters. In summary, temperature was the strongest environmental factor influencing the larvacean community structure in the Drake Passage, and we also found that testing environmental factors on larvaceans as a whole group did not give entirely reliable results. Full article

(This article belongs to the Section Marine Diversity)

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19 pages, 2629 KiB

Open AccessEditor’s ChoiceArticle

Diversity of Testate Amoebae as an Indicator of the Conservation Status of Peatlands in Southwest Europe

by Rafael Carballeira and Xabier Pontevedra-Pombal

Diversity 2021, 13(6), 269; https://doi.org/10.3390/d13060269 - 15 Jun 2021

Cited by 15 | Viewed by 4459

Abstract

Testate amoebae are one of the most studied groups of microorganisms in Sphagnum peatland ecosystems and, therefore, one of the most reliable bioindicators of their ecological status. Peatland ecosystems are supported by a delicate biogeochemical balance that leads to the formation of peat, [...] Read more.

Testate amoebae are one of the most studied groups of microorganisms in Sphagnum peatland ecosystems and, therefore, one of the most reliable bioindicators of their ecological status. Peatland ecosystems are supported by a delicate biogeochemical balance that leads to the formation of peat, one of the main sinks of C, as a result of soil–atmosphere interaction, but currently they are one of the most threatened wetland types at their southern distribution limit. In the European continent, where climatic conditions limit peat formation, they have endured significant anthropic pressure for centuries, and the risk of loss of biodiversity linked to these ecosystems is critical. In addition, peatlands are poorly known ecosystems in the Iberian Peninsula compared with other wetlands; therefore, we have studied the chemical parameters of water and the diversity patterns of testate amoebae in the western Iberian Peninsula to better understand the current status of these ecosystems. The analysis of testate amoeba communities showed an inverse relationship between the diversity and conservation status of these peatlands, both in relation to chemical parameters (i.e., pH, electrical conductivity, phosphates) and to the proportion of anthropized area, with a marked geographical pattern in the degree of anthropogenic disturbance. Full article

(This article belongs to the Special Issue Ecology, Biogeography and Evolutionary Biology of Peatlands)

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18 pages, 3101 KiB

Open AccessEditor’s ChoiceArticle

Postojna-Planina Cave System in Slovenia, a Hotspot of Subterranean Biodiversity and a Cradle of Speleobiology

by Maja Zagmajster, Slavko Polak and Cene Fišer

Diversity 2021, 13(6), 271; https://doi.org/10.3390/d13060271 - 15 Jun 2021

Cited by 24 | Viewed by 5883

Abstract

The Postojna-Planina Cave System (PPCS) in central Slovenia is a globally exceptional site of subterranean biodiversity, comprised of many interconnected caves with cumulative passage length exceeding 34 km. Two rivers sink into the caves of the PPCS, called the Pivka and Rak, and [...] Read more.

The Postojna-Planina Cave System (PPCS) in central Slovenia is a globally exceptional site of subterranean biodiversity, comprised of many interconnected caves with cumulative passage length exceeding 34 km. Two rivers sink into the caves of the PPCS, called the Pivka and Rak, and join underground into Unica River, which emerges to the surface. The studies of fauna of PPCS began in the 19th century with the first scientific descriptions of specialized cave animals in the world, making it “the cradle of speleobiology”. Currently, the species list of PPCS contains 116 troglobiotic animal species belonging to eight phyla, confirming its status as the richest in the world. Of these, 47 species have been scientifically described from the PPCS, and more than 10 await formal taxonomic descriptions. We expect that further sampling, detailed analyses of less studied taxa, and the use of molecular methods may reveal more species. To keep the cave animals’ checklist in PPCS up-to-date, we have supplemented the printed checklist with an online interface. As the revised checklist is a necessary first step for further activities, we discuss the importance of PPCS in terms of future research and conservation. Full article

(This article belongs to the Special Issue Hotspots of Subterranean Biodiversity)

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15 pages, 3556 KiB

Open AccessEditor’s ChoiceArticle

Mediterranean Red Macro Algae Mats as Habitat for High Abundances of Serpulid Polychaetes

by Felix I. Rossbach, Edoardo Casoli, Milan Beck and Christian Wild

Diversity 2021, 13(6), 265; https://doi.org/10.3390/d13060265 - 11 Jun 2021

Cited by 11 | Viewed by 4061

Abstract

The Mediterranean Sea harbors more than 17,000 eukaryotic marine species, with several ecosystems recognized as biodiversity hotspots, such as Posidonia oceanica meadows. Recent research indicates that benthic mats formed by the fleshy red alga Phyllophora crispa are also associated with high species richness. [...] Read more.

The Mediterranean Sea harbors more than 17,000 eukaryotic marine species, with several ecosystems recognized as biodiversity hotspots, such as Posidonia oceanica meadows. Recent research indicates that benthic mats formed by the fleshy red alga Phyllophora crispa are also associated with high species richness. Among key groups found in these mats are sessile polychaetes, which live as epiphytes on the red algae thalli. Knowledge of abundance, species richness, and spatial variation of polychaetes associated with these habitats is still scarce. We carried out a comparative assessment focusing on serpulid polychaetes within samples from P. crispa mats and neighboring P. oceanica meadows at six different sampling sites around Giglio Island (Tyrrhenian Sea, Italy). A total of 17 serpulid taxa were identified. The abundance of serpulids (5665 individuals m⁻² of P. crispa mat) were similar to neighboring P. oceanica meadows (2304 individuals m⁻² leaves and 5890 individuals m⁻² shoots). The number of serpulid taxa was significantly higher in P. crispa mats (average 6.63 ± 1.32 taxa) compared to P. oceanica beds (average 1.56 ± 0.63 and 1.84 ± 1.04 taxa in leaves and shoots, respectively). Within habitat type, there were no significant differences in species richness between sites. The most abundant species found was Josephella marenzelleri (61% of individuals), while Vermiliopsis spp. and Bathyvermilia sp. were exclusively found in P. crispa samples. Our results highlight that P. crispa mats host an exceptional diversity and that these habitats should be included in conservation strategies. Further research should focus on the significance of other important taxonomic groups within these mats and evaluate the distribution of P. crispa in different regions of the Mediterranean Sea. Full article

(This article belongs to the Special Issue Biodiversity Conservation in Mediterranean Sea)

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23 pages, 2109 KiB

Open AccessEditor’s ChoiceReview

Turbid Coral Reefs: Past, Present and Future—A Review

by Adi Zweifler (Zvifler), Michael O’Leary, Kyle Morgan and Nicola K. Browne

Diversity 2021, 13(6), 251; https://doi.org/10.3390/d13060251 - 7 Jun 2021

Cited by 84 | Viewed by 17331

Abstract

Increasing evidence suggests that coral reefs exposed to elevated turbidity may be more resilient to climate change impacts and serve as an important conservation hotspot. However, logistical difficulties in studying turbid environments have led to poor representation of these reef types within the [...] Read more.

Increasing evidence suggests that coral reefs exposed to elevated turbidity may be more resilient to climate change impacts and serve as an important conservation hotspot. However, logistical difficulties in studying turbid environments have led to poor representation of these reef types within the scientific literature, with studies using different methods and definitions to characterize turbid reefs. Here we review the geological origins and growth histories of turbid reefs from the Holocene (past), their current ecological and environmental states (present), and their potential responses and resilience to increasing local and global pressures (future). We classify turbid reefs using new descriptors based on their turbidity regime (persistent, fluctuating, transitional) and sources of sediment input (natural versus anthropogenic). Further, by comparing the composition, function and resilience of two of the most studied turbid reefs, Paluma Shoals Reef Complex, Australia (natural turbidity) and Singapore reefs (anthropogenic turbidity), we found them to be two distinct types of turbid reefs with different conservation status. As the geographic range of turbid reefs is expected to increase due to local and global stressors, improving our understanding of their responses to environmental change will be central to global coral reef conservation efforts. Full article

(This article belongs to the Special Issue Marginal Reef Systems: Resilience in A Rapidly Changing World)

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22 pages, 2600 KiB

Open AccessEditor’s ChoiceArticle

Seagrass and Oyster Reef Restoration in Living Shorelines: Effects of Habitat Configuration on Invertebrate Community Assembly

by Cassie M. Pinnell, Geana S. Ayala, Melissa V. Patten and Katharyn E. Boyer

Diversity 2021, 13(6), 246; https://doi.org/10.3390/d13060246 - 4 Jun 2021

Cited by 14 | Viewed by 5536

Abstract

Restoration projects provide a valuable opportunity to experimentally establish foundational habitats in different combinations to test relative effects on community assembly. We evaluated the development of macroinvertebrate communities in response to planting of eelgrass (Zostera marina) and construction of reefs intended [...] Read more.

Restoration projects provide a valuable opportunity to experimentally establish foundational habitats in different combinations to test relative effects on community assembly. We evaluated the development of macroinvertebrate communities in response to planting of eelgrass (Zostera marina) and construction of reefs intended to support the Olympia oyster (Ostrea lurida) in the San Francisco Estuary. Plots of each type, alone or interspersed, were established in 2012 in a pilot living shorelines project, and quarterly invertebrate monitoring was conducted for one year prior to restoration, and three years post-restoration using suction sampling and eelgrass shoot collection. Suction sampling revealed that within one year, oyster reefs supported unique invertebrate assemblages as compared to pre-restoration conditions and controls (unmanipulated mudflat). The eelgrass invertebrate assemblage also shifted, becoming intermediate between reefs and controls. Interspersing both types of habitat structure led eelgrass invertebrate communities to more closely resemble those of oyster reefs alone, though the eelgrass assemblage maintained some distinction (primarily by supporting gammarid and caprellid amphipods). Eelgrass shoot collection documented some additional taxa known to benefit eelgrass growth through consumption of epiphytic algae; however, even after three years, restored eelgrass did not establish an assemblage equivalent to natural beds, as the eelgrass sea hare (Phyllaplysia taylori) and eelgrass isopod (Pentidotea resecata) remained absent or very rare. We conclude that the restoration of two structurally complex habitat types within tens of meters maximized the variety of invertebrate assemblages supported, but that close interspersion dampened the separately contributed distinctiveness. In addition, management intervention may be needed to overcome the recruitment limitation of species with important roles in maintaining eelgrass habitat. Full article

(This article belongs to the Special Issue Biodiversity in Seagrass Ecosystems)

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18 pages, 2658 KiB

Open AccessEditor’s ChoiceArticle

Stygobiont Diversity in the San Marcos Artesian Well and Edwards Aquifer Groundwater Ecosystem, Texas, USA

by Benjamin T. Hutchins, J. Randy Gibson, Peter H. Diaz and Benjamin F. Schwartz

Diversity 2021, 13(6), 234; https://doi.org/10.3390/d13060234 - 26 May 2021

Cited by 18 | Viewed by 4503

Abstract

The Edwards Aquifer and related Edwards-Trinity Aquifer of Central Texas, USA, is a global hotspot of stygobiont biodiversity. We summarize 125 years of biological investigation at the San Marcos Artesian Well (SMAW), the best studied and most biodiverse groundwater site (55 stygobiont taxa: [...] Read more.

The Edwards Aquifer and related Edwards-Trinity Aquifer of Central Texas, USA, is a global hotspot of stygobiont biodiversity. We summarize 125 years of biological investigation at the San Marcos Artesian Well (SMAW), the best studied and most biodiverse groundwater site (55 stygobiont taxa: 39 described and 16 undescribed) within the Edwards Aquifer Groundwater Ecosystem. Cluster analysis and redundancy analysis (RDA) incorporating temporally derived, distance-based Moran’s Eigenvector Mapping (dbMem) illustrate temporal dynamics in community composition in 85 high-frequency samples from the SMAW. Although hydraulic variability related to precipitation and discharge partially explained changes in community composition at the SMAW, a large amount of temporal autocorrelation between samples remains unexplained. We summarize potential mechanisms by which hydraulic changes can affect community structure in deep, phreatic karst aquifers. We also compile information on 12 other Edwards and Edwards-Trinity Aquifer sites with 10 or more documented stygobionts and used distance-based RDA to assess the relative influences of distance and site type on three measures of β-diversity. Distance between sites was the most important predictor of total dissimilarity and replacement, although site type was also important. Species richness difference was not predicted by either distance or site type. Full article

(This article belongs to the Special Issue Hotspots of Subterranean Biodiversity)

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10 pages, 2435 KiB

Open AccessEditor’s ChoiceArticle

Multivariate Abundance Analysis of Multi-Host/Multi-Parasite Lungworms in a Sympatric Wild Ruminant Population

by Tessa Carrau, Carlos Martínez-Carrasco, María Magdalena Garijo, Francisco Alonso, Rocío Ruiz de Ybáñez and Paolo Tizzani

Diversity 2021, 13(6), 227; https://doi.org/10.3390/d13060227 - 23 May 2021

Cited by 4 | Viewed by 2893

Abstract

In the analysis of a multi-host/multi-parasite system and its associated risk factors, it is particularly interesting to understand the natural dynamics among pathogens, their hosts, and the environment in wildlife populations. This analysis is particularly feasible in a scenario where multiple overlapping host [...] Read more.

In the analysis of a multi-host/multi-parasite system and its associated risk factors, it is particularly interesting to understand the natural dynamics among pathogens, their hosts, and the environment in wildlife populations. This analysis is particularly feasible in a scenario where multiple overlapping host populations are present in high densities, along with a complex community of parasites. We aimed to describe and analyze the naturally occurring lungworm polyparasitism in a wild ruminant community in Southeast Spain. The respiratory tracts of 250 specimens belonging to four different species (red deer, mouflon, Iberian ibex, and fallow deer) were studied. Almost half (48.0%) of the animals were infected with bronchopulmonary nematodes. Seven different nematodes were identified of which two genera (Protostrongylus spp. and Dictyocaulus spp.) and three additional species (Cystocaulus ocreatus, Muellerius capillaris, and Neostrongylus linearis) were recorded in at least two ruminants, with the mouflon as the commonest host. Our study shows a significant effect of host species and sampling area, plus a marginal effect of age, on parasite multivariate abundance at the host population level. Mouflon and adults of all hosts appear to carry the highest parasite load on average. From a spatial perspective, the highest parasite abundance was detected at the central part of the park. Full article

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14 pages, 1660 KiB

Open AccessEditor’s ChoiceArticle

Unravelling the Symbiotic Microalgal Diversity in Buellia zoharyi (Lichenized Ascomycota) from the Iberian Peninsula and Balearic Islands Using DNA Metabarcoding

by Patricia Moya, Salvador Chiva, Arantzazu Molins, Isaac Garrido-Benavent and Eva Barreno

Diversity 2021, 13(6), 220; https://doi.org/10.3390/d13060220 - 21 May 2021

Cited by 12 | Viewed by 3702

Abstract

Buellia zoharyi is a crustose placodioid lichen, usually occurring on biocrusts of semiarid ecosystems in circum-Mediterranean/Macaronesian areas. In previous work, we found that this lichenized fungus was flexible in its phycobiont choice in the Canary Islands. Here we test whether geography and habitat [...] Read more.

Buellia zoharyi is a crustose placodioid lichen, usually occurring on biocrusts of semiarid ecosystems in circum-Mediterranean/Macaronesian areas. In previous work, we found that this lichenized fungus was flexible in its phycobiont choice in the Canary Islands. Here we test whether geography and habitat influence phycobiont diversity in populations of this lichen from the Iberian Peninsula and Balearic Islands using Sanger and high throughput sequencing (HTS). Additionally, three thallus section categories (central, middle and periphery) were analyzed to explore diversity of microalgal communities in each part. We found that B. zoharyi populations hosted at least three different Trebouxia spp., and this lichen can associate with distinct phycobiont strains in different habitats and geographic regions. This study also revealed that the Trebouxia composition of this lichen showed significant differences when comparing the Iberian Peninsula with the Balearics thalli. No support for differences in microalgal communities was found among thallus sections; however, several thalli showed different predominant Trebouxia spp. at each section. This result corroborate that thallus parts selected for DNA extraction in metabarcoding analyses are key to not bias the total phycobiont diversity detected. This study highlights that inclusion of HTS analysis is crucial to understand lichen symbiotic microalgal diversity. Full article

(This article belongs to the Special Issue Advances in HTS-Based Identification of Species and Ecological Interactions)

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17 pages, 15325 KiB

Open AccessEditor’s ChoiceArticle

Not the Cryptic Species: Diversity of Hipposideros gentilis (Chiroptera: Hipposideridae) in Indochina

by Alexander P. Yuzefovich, Ilya V. Artyushin and Sergei V. Kruskop

Diversity 2021, 13(5), 218; https://doi.org/10.3390/d13050218 - 19 May 2021

Cited by 10 | Viewed by 3895

Abstract

We present here the result of phylogenetic analysis for Vietnamese Hipposideros gentilis specimens using 7 nuclear genes and one mitochondrial gene. The complex distribution of divergent mitochondrial DNA lineages contradicts, at least in part, nuclear and morphological data. The most likely explanation [...] Read more.

We present here the result of phylogenetic analysis for Vietnamese Hipposideros gentilis specimens using 7 nuclear genes and one mitochondrial gene. The complex distribution of divergent mitochondrial DNA lineages contradicts, at least in part, nuclear and morphological data. The most likely explanation for this discordance is the historical hybridization between ancestral populations of H. gentilis and H. rotalis/H. khaokhouayensis. Our data supports the species status of H. gentilis, while only partially corroborating its previously proposed subspecies delimitation. We suggest the lowland forest populations from south Vietnam may correspond to their own subspecies. At the same time, the close phylogenetic relationship and morphological similarity of mountain forms from south and central Vietnam to the north Vietnamese populations make doubtful the subspecies status of H. gentilis sinensis. Full article

(This article belongs to the Special Issue Diversity Aspects in Bats: Genetics, Morphology, Community Structure)

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12 pages, 24161 KiB

Open AccessEditor’s ChoiceArticle

Diversity of Pod Shape in Pisum

by Thomas Henry Noel Ellis, Julie M. I. Hofer, Eleni Vikeli, Michael J. Ambrose, Paola Higuera-Poveda, Luzie U. Wingen and Noam Chayut

Diversity 2021, 13(5), 203; https://doi.org/10.3390/d13050203 - 12 May 2021

Cited by 7 | Viewed by 6502

Abstract

The seed-containing pod is the defining structure of plants in the legume family, yet pods exhibit a wide range of morphological variation. Within a species pod characters are likely to be correlated with reproductive strategy, and within cultivated forms will correspond to aspects [...] Read more.

The seed-containing pod is the defining structure of plants in the legume family, yet pods exhibit a wide range of morphological variation. Within a species pod characters are likely to be correlated with reproductive strategy, and within cultivated forms will correspond to aspects of yield determination and/or end use. Here variation in pod size, described as pod length: pod width ratio, has been analyzed in pea germplasm represented by 597 accessions. This pod size variation is discussed with respect to population structure and to known classical pod morphology mutants. Variability of the pod length: width ratio can be explained by allelic variation at two genetic loci that may correspond to organ-specific negative regulators of growth. Full article

(This article belongs to the Special Issue Legume Evolution and Diversity)

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18 pages, 3625 KiB

Open AccessEditor’s ChoiceArticle

Burrowing Parrots Cyanoliseus patagonus as Long-Distance Seed Dispersers of Keystone Algarrobos, Genus Prosopis, in the Monte Desert

by Guillermo Blanco, Pedro Romero-Vidal, Martina Carrete, Daniel Chamorro, Carolina Bravo, Fernando Hiraldo and José L. Tella

Diversity 2021, 13(5), 204; https://doi.org/10.3390/d13050204 - 12 May 2021

Cited by 7 | Viewed by 5092

Abstract

Understanding of ecosystem structure and functioning requires detailed knowledge about plant–animal interactions, especially when keystone species are involved. The recent consideration of parrots as legitimate seed dispersers has widened the range of mechanisms influencing the life cycle of many plant species. We examined [...] Read more.

Understanding of ecosystem structure and functioning requires detailed knowledge about plant–animal interactions, especially when keystone species are involved. The recent consideration of parrots as legitimate seed dispersers has widened the range of mechanisms influencing the life cycle of many plant species. We examined the interactions between the burrowing parrot Cyanoliseus patagonus and two dominant algarrobo trees (Prosopis alba and Prosopis nigra) in the Monte Desert, Argentina. We recorded the abundance and foraging behaviour of parrots; quantified the handling, consumption, wasting, and dispersal of ripe and unripe pods; and tested the viability of soft and hard ripe seeds wasted and transported by parrots. We found a high abundance of burrowing parrots. They predated on soft seeds from unripe pods while exclusively feeding upon pulp wrapping hard seeds from ripe pods. Frequent pod wasting beneath the plant or transport at a distance invariably implied the dispersal of multiple seeds in each event. Moreover, soft seeds retained viability after desiccation outside the mother plant, suggesting effective seed dispersal after partial pod predation due to a predator satiation effect. In about half of the foraging flocks, at least one parrot departed in flight with pods in its beak, with 10–34% of the flock components moving pods at distances averaging 238 m (P. alba) and 418 m (P. nigra). A snapshot sampling of faeces from livestock and wild mammals suggested a low frequency of seed dispersal by endozoochory and secondary dispersal by ants and dung beetles. The nomadic movements and long flights of burrowing parrots between breeding and foraging sites can lead to the dispersal of huge amounts of seeds across large areas that are sequentially exploited. Further research should evaluate the role of the burrowing parrot as a functionally unique species in the structure of the Monte Desert woods and the genetic structure of algarrobo species. Full article

(This article belongs to the Special Issue Ecology and Conservation of Parrots in Their Native and Non-Native Ranges)

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14 pages, 4509 KiB

Open AccessEditor’s ChoiceArticle

Reusing Old and Producing New Data Is Useful for Species Delimitation in the Taxonomically Controversial Iberian Endemic Pair Petrocoptis montsicciana/P. pardoi (Caryophyllaceae)

by Neus Nualart, Sonia Herrando-Moraira, Eduardo Cires, Moisès Guardiola, Emilio Laguna, David Pérez-Prieto, Llorenç Sáez and Jordi López-Pujol

Diversity 2021, 13(5), 205; https://doi.org/10.3390/d13050205 - 12 May 2021

Cited by 2 | Viewed by 3274

Abstract

Petrocoptis montsicciana and P. pardoi are two Iberian endemic taxa of Caryophyllaceae family with an unclear taxonomic delimitation, being variously treated as independent species, subspecies or even synonyms. In the present study, allozyme raw data obtained in the early 2000s have been reused [...] Read more.

Petrocoptis montsicciana and P. pardoi are two Iberian endemic taxa of Caryophyllaceae family with an unclear taxonomic delimitation, being variously treated as independent species, subspecies or even synonyms. In the present study, allozyme raw data obtained in the early 2000s have been reused with improved tools to survey genetic structure, and complemented with modeling and niche comparative analyses to shed light on species delimitation. Genetic structure was investigated using four approaches: Bayesian clustering, Monmonier’s algorithm, Principal Coordinate Analysis (PCoA), and Analysis of Molecular Variance (AMOVA). Ecological niche differences have been assessed through Ecological Niche Modeling (ENM) using MaxEnt, and Principal Component Analysis using both occurrence records and background climate (PCA-env). Genetic analysis confirms the distinction between both taxa, and the scenario of a progenitor–derivative (P–D) is suggested. In agreement with genetic data, niche analysis shows clear differences between their climate regarding species occurrences and background spaces. Climate divergence could be explained, at least partially, by the abundance of rocks where species live although differences at the microclimate instead of the regional climate should be explored in future research. Given the genetic distinction between P. montsicciana and P. pardoi, both taxa should be regarded as separate ‘Management Units’ (MUs). Full article

(This article belongs to the Special Issue Conservation Genetics and Biogeography of Seed Plant Species)

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16 pages, 1089 KiB

Open AccessEditor’s ChoiceArticle

Mining Sorghum Biodiversity—Potential of Dual-Purpose Hybrids for Bio-Economy

by Adnan Kanbar, Noemi Flubacher, Jiří Hermuth, Klára Kosová, Thomas Horn and Peter Nick

Diversity 2021, 13(5), 192; https://doi.org/10.3390/d13050192 - 29 Apr 2021

Cited by 9 | Viewed by 3552

Abstract

Sweet, grain, and dual-purpose sorghums differ in a number of important traits, including biomass production, total solutes in the stem juice, and sugar accumulation across the stem. Ten dual-purpose hybrids, two sweet genotypes, and two grain landraces of sorghums were characterized under temperate [...] Read more.

Sweet, grain, and dual-purpose sorghums differ in a number of important traits, including biomass production, total solutes in the stem juice, and sugar accumulation across the stem. Ten dual-purpose hybrids, two sweet genotypes, and two grain landraces of sorghums were characterized under temperate environmental conditions to determine their potential for bioethanol production. Five sorghum hybrids (Ganymed, Hannibal, Tarzan, Merlin, and Zerberus) performed better with respect to cane yield, juice yield, potential sugar, and ethanol yields compared to sweet and grain genotypes. While the sweet genotype KIT1 produced the highest sugar concentration in the stem, the lowest concentration was produced by the grain landrace Razinieh. The study showed that plant height, leaf number, leaf weight, cane yield, and juice yield were positively correlated with the sugar yield in fresh stalk. Sugar accumulation was higher in the central internodes of all genotypes. Clustering analysis showed that sweet genotypes are located more closely to dual-purpose hybrids than grain landraces. We discuss the results with respect to the potential of dual-purpose sorghum hybrids for bio-economy in Germany. Full article

(This article belongs to the Special Issue Feature Papers in Plant Diversity)

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15 pages, 28896 KiB

Open AccessFeature PaperEditor’s ChoiceArticle

Karstic Landscapes Are Foci of Species Diversity in the World’s Third-Largest Vertebrate Genus Cyrtodactylus Gray, 1827 (Reptilia: Squamata; Gekkonidae)

by Lee Grismer, Perry L. Wood, Nikolay A. Poyarkov, Minh D. Le, Suranjan Karunarathna, Siriwadee Chomdej, Chatmongkon Suwannapoom, Shuo Qi, Shuo Liu, Jing Che, Evan S. H. Quah, Fred Kraus, Paul M. Oliver, Awal Riyanto, Olivier S. G. Pauwels and Jesse L. Grismer

Diversity 2021, 13(5), 183; https://doi.org/10.3390/d13050183 - 28 Apr 2021

Cited by 64 | Viewed by 6199

Abstract

Karstic landscapes are immense reservoirs of biodiversity and range-restricted endemism. Nowhere is this more evident than in the world’s third-largest vertebrate genus Cyrtodactylus (Gekkonidae) which contains well over 300 species. A stochastic character mapping analysis of 10 different habitat preferences across a phylogeny [...] Read more.

Karstic landscapes are immense reservoirs of biodiversity and range-restricted endemism. Nowhere is this more evident than in the world’s third-largest vertebrate genus Cyrtodactylus (Gekkonidae) which contains well over 300 species. A stochastic character mapping analysis of 10 different habitat preferences across a phylogeny containing 344 described and undescribed species recovered a karst habitat preference occurring in 25.0% of the species, whereas that of the other eight specific habitat preferences occurred in only 0.2–11.0% of the species. The tenth category—general habitat preference—occurred in 38.7% of the species and was the ancestral habitat preference for Cyrtodactylus and the ultimate origin of all other habitat preferences. This study echoes the results of a previous study illustrating that karstic landscapes are generators of species diversity within Cyrtodactylus and not simply “imperiled arks of biodiversity” serving as refugia for relics. Unfortunately, the immense financial returns of mineral extraction to developing nations largely outweighs concerns for biodiversity conservation, leaving approximately 99% of karstic landscapes with no legal protection. This study continues to underscore the urgent need for their appropriate management and conservation. Additionally, this analysis supports the monophyly of the recently proposed 31 species groups and adds one additional species group. Full article

(This article belongs to the Special Issue Evolutionary Ecology of Lizards)

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9 pages, 250 KiB

Open AccessEditor’s ChoiceReview

Progress on Research Regarding Ecology and Biodiversity of Coastal Fisheries and Nektonic Species and Their Habitats within Coastal Landscapes

by Mark S. Peterson and Michael J. Andres

Diversity 2021, 13(4), 168; https://doi.org/10.3390/d13040168 - 15 Apr 2021

Cited by 4 | Viewed by 3797

Abstract

This paper aims to highlight the new research and significant advances in our understanding of links between coastal habitat quality/quantity/diversity and the diversity of fisheries species and other mobile aquatic species (hereafter nekton) that use them within coastal landscapes. This topic is quite [...] Read more.

This paper aims to highlight the new research and significant advances in our understanding of links between coastal habitat quality/quantity/diversity and the diversity of fisheries species and other mobile aquatic species (hereafter nekton) that use them within coastal landscapes. This topic is quite diverse owing to the myriad of habitat types found in coastal marine waters and the variety of life history strategies fisheries species and nekton use in these environments. Thus, we focus our review on five selective but relevant topics, habitat templates, essential fish habitat, habitat mosaics/habitat connectivity, transitory/ephemeral habitat, and the emerging/maturing approaches to the study of fish-habitat systems as a roadmap to its development. We have highlighted selected important contributions in the progress made on each topic to better identify and quantify landscape scale interactions between living biota and structured habitats set within a dynamic landscape. Full article

(This article belongs to the Special Issue Ecology and Biodiversity of Coastal Marine Fisheries Species and Their Habitats)

11 pages, 9770 KiB

Open AccessEditor’s ChoiceArticle

Differing Life-History Strategies of Two Mycoheterotrophic Orchid Species Associated with Leaf Litter- and Wood-Decaying Fungi

by Yuki Ogura-Tsujita, Kenshi Tetsuka, Shuichiro Tagane, Miho Kubota, Shuichiro Anan, Yumi Yamashita, Koichi Tone and Tomohisa Yukawa

Diversity 2021, 13(4), 161; https://doi.org/10.3390/d13040161 - 8 Apr 2021

Cited by 8 | Viewed by 4162

Abstract

Mycoheterotrophic orchids depend completely on mycorrhizal fungi for their supply of carbon. The life-history traits of mycoheterotrophic plants (MHPs) can differ according to the characteristics of the associated mycorrhizal fungi. We compared the life-history strategies of two mycoheterotrophic orchids associated with wood- and [...] Read more.

Mycoheterotrophic orchids depend completely on mycorrhizal fungi for their supply of carbon. The life-history traits of mycoheterotrophic plants (MHPs) can differ according to the characteristics of the associated mycorrhizal fungi. We compared the life-history strategies of two mycoheterotrophic orchids associated with wood- and leaf litter-decaying fungi over a maximum of six years of field monitoring. Seventy percent of the aboveground stems of Erythrorchis altissima, associated with wood-decaying fungi, disappeared from the host wood within two years after tagging, likely due to nutrient depletion. In contrast, Gastrodia confusa, associated with leaf litter-decaying fungi, occurred continuously (18 to 108 fruiting stalks) every year within a small-scale plot (12 × 45 m) for six years through seed and clonal propagation. Our results support the idea that mycoheterotrophic orchids associated with wood-decaying fungi disappear from their habitats due to nutrient depletion after their host wood has mostly decayed, while mycoheterotrophic orchids associated with leaf litter-decaying fungi can survive in small-scale habitats where substantial leaf fall regularly occurs to sustain the associated fungi. Our study provides basic information about a unique life-history strategy in MHPs associated with saprotrophic fungi and an understanding of the variation in life-history strategies among MHPs. Full article

(This article belongs to the Special Issue The Ecology and Diversity of Orchids)

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11 pages, 1874 KiB

Open AccessEditor’s ChoiceArticle

Habitat Partitioning and Overlap by Large Lacertid Lizards in Southern Europe

by Daniel Escoriza and Félix Amat

Diversity 2021, 13(4), 155; https://doi.org/10.3390/d13040155 - 4 Apr 2021

Cited by 9 | Viewed by 4156

Abstract

South-western Europe has a rich diversity of lacertid lizards. In this study, we evaluated the occupancy patterns and niche segregation of five species of lacertids, focusing on large-bodied species (i.e., adults having >75 mm snout-vent length) that occur in south-western Europe (Italian to [...] Read more.

South-western Europe has a rich diversity of lacertid lizards. In this study, we evaluated the occupancy patterns and niche segregation of five species of lacertids, focusing on large-bodied species (i.e., adults having >75 mm snout-vent length) that occur in south-western Europe (Italian to the Iberian Peninsula). We characterized the niches occupied by these species based on climate and vegetation cover properties. We expected some commonality among phylogenetically related species, but also patterns of habitat segregation mitigating competition between ecologically equivalent species. We used multivariate ordination and probabilistic methods to describe the occupancy patterns and evaluated niche evolution through phylogenetic analyses. Our results showed climate niche partitioning, but with a wide overlap in transitional zones, where segregation is maintained by species-specific responses to the vegetation cover. The analyses also showed that phylogenetically related species tend to share large parts of their habitat niches. The occurrence of independent evolutionary lineages contributed to the regional species richness favored by a long history of niche divergence. Full article

(This article belongs to the Special Issue Evolutionary Ecology of Lizards)

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24 pages, 4376 KiB

Open AccessEditor’s ChoiceArticle

Conservation Genetics of Four Critically Endangered Greek Endemic Plants: A Preliminary Assessment

by Konstantinos Kougioumoutzis, Panayiota Kotsakiozi, Efthalia Stathi, Panayiotis Trigas and Aristeidis Parmakelis

Diversity 2021, 13(4), 152; https://doi.org/10.3390/d13040152 - 31 Mar 2021

Cited by 13 | Viewed by 5135

Abstract

The Mediterranean basin constitutes one of the largest global biodiversity hotspots, hosting more than 11,000 endemic plants, and it is recognised as an area with a high proportion of threatened taxa. Nevertheless, only a tiny fraction of the threatened Mediterranean endemics have their [...] Read more.

The Mediterranean basin constitutes one of the largest global biodiversity hotspots, hosting more than 11,000 endemic plants, and it is recognised as an area with a high proportion of threatened taxa. Nevertheless, only a tiny fraction of the threatened Mediterranean endemics have their genetic diversity assessed, and we are unaware if and how climate change might impact their conservation status. This is even more pronounced in Eastern Mediterranean countries with a rich endemic flora, such as Greece, which hosts a large portion of the plant taxa assessed at the European level under the IUCN criteria. Using inter simple sequence repeats (ISSR) markers and species distribution models, we analysed the genetic diversity and investigated the impacts of climate change on four critically endangered and extremely narrow and rare Greek island endemic plants, namely Aethionema retsina, Allium iatrouinum, Convolvulus argyrothamnos, and Saponaria jagelii. All four species are facing intense anthropogenic threats and display moderate genetic diversity (uHe: 0.254–0.322), while climate change is expected to have a profound impact on their range size during the coming decades. A combination of in- and ex-situ measures, such as population reinforcement and seed bank conservation, are urgently needed in order to preserve these highly threatened and rare Greek endemics. Full article

(This article belongs to the Special Issue Conservation Genetics and Biogeography of Seed Plant Species)

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16 pages, 1961 KiB

Open AccessEditor’s ChoiceReview

The Evolutionary History, Diversity, and Ecology of Willows (Salix L.) in the European Alps

by Natascha D. Wagner, Li He and Elvira Hörandl

Diversity 2021, 13(4), 146; https://doi.org/10.3390/d13040146 - 30 Mar 2021

Cited by 27 | Viewed by 7669

Abstract

The genus Salix (willows), with 33 species, represents the most diverse genus of woody plants in the European Alps. Many species dominate subalpine and alpine types of vegetation. Despite a long history of research on willows, the evolutionary and ecological factors for this [...] Read more.

The genus Salix (willows), with 33 species, represents the most diverse genus of woody plants in the European Alps. Many species dominate subalpine and alpine types of vegetation. Despite a long history of research on willows, the evolutionary and ecological factors for this species richness are poorly known. Here we will review recent progress in research on phylogenetic relationships, evolution, ecology, and speciation in alpine willows. Phylogenomic reconstructions suggest multiple colonization of the Alps, probably from the late Miocene onward, and reject hypotheses of a single radiation. Relatives occur in the Arctic and in temperate Eurasia. Most species are widespread in the European mountain systems or in the European lowlands. Within the Alps, species differ ecologically according to different elevational zones and habitat preferences. Homoploid hybridization is a frequent process in willows and happens mostly after climatic fluctuations and secondary contact. Breakdown of the ecological crossing barriers of species is followed by introgressive hybridization. Polyploidy is an important speciation mechanism, as 40% of species are polyploid, including the four endemic species of the Alps. Phylogenomic data suggest an allopolyploid origin for all taxa analyzed so far. Further studies are needed to specifically analyze biogeographical history, character evolution, and genome evolution of polyploids. Full article

(This article belongs to the Special Issue Diversity, Ecology and Conservation of Alpine Plants)

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6 pages, 2261 KiB

Open AccessEditor’s ChoiceInteresting Images

Unexplored Refugia with High Cover of Scleractinian Leptoseris spp. and Hydrocorals Stylaster flabelliformis at Lower Mesophotic Depths (75–100 m) on Lava Flows at Reunion Island (Southwestern Indian Ocean)

by Ludovic Hoarau, Héloïse Rouzé, Émilie Boissin, Nicole Gravier-Bonnet, Patrick Plantard, Camille Loisil, Lionel Bigot, Pascale Chabanet, Priscille Labarrère, Lucie Penin, Mehdi Adjeroud and Thierry Mulochau

Diversity 2021, 13(4), 141; https://doi.org/10.3390/d13040141 - 25 Mar 2021

Cited by 16 | Viewed by 7826

Abstract

Despite increased attention over the last decade on Mesophotic Coral Ecosystems (MCEs) [...] Full article

(This article belongs to the Special Issue Biodiversity of Mesophotic Ecosystems)

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19 pages, 2370 KiB

Open AccessEditor’s ChoiceReview

Eciton Army Ants—Umbrella Species for Conservation in Neotropical Forests

by Sílvia Pérez-Espona

Diversity 2021, 13(3), 136; https://doi.org/10.3390/d13030136 - 22 Mar 2021

Cited by 23 | Viewed by 8336

Abstract

Identification of priority areas for conservation is crucial for the maintenance and protection of biodiversity, particularly in tropical forests where biodiversity continues to be lost at alarming rates. Surveys and research on umbrella species can provide efficient and effective approaches to identify potential [...] Read more.

Identification of priority areas for conservation is crucial for the maintenance and protection of biodiversity, particularly in tropical forests where biodiversity continues to be lost at alarming rates. Surveys and research on umbrella species can provide efficient and effective approaches to identify potential areas for conservation at small geographical scales. Army ants of the genus Eciton are keystone species in neotropical forests due to their major role as top predators and due to the numerous vertebrate- and invertebrate associated species that depend upon their colonies for survival. These associates range from the iconic army ant-following birds to a wide range of arthropod groups, some of which have evolved intricate morphological, behavioural and/or chemical strategies to conceal their presence and integrate into the colony life. Furthermore, Eciton colonies require large forested areas that support a diverse leaf litter prey community and several field-based and genetic studies have demonstrated the negative consequences of forest fragmentation for the long-term maintenance of these colonies. Therefore, Eciton species will not only act as umbrella for their associates but also for many other species in neotropical forests, in particular for those that require a large extent of forest. This review summarises past and recent accounts of the main taxonomic groups found associated with Eciton colonies, as well research assessing the impact of forest fragmentation on this army ant, to encourage the adoption of Eciton army ants as umbrella species for the identification of priority areas for conservation and assessments of the effect of disturbance in neotropical forests. Full article

(This article belongs to the Special Issue Diversity, Biogeography and Community Ecology of Ants)

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11 pages, 1277 KiB

Open AccessEditor’s ChoiceArticle

Common Vole as a Focal Small Mammal Species in Orchards of the Northern Zone

by Vitalijus Stirkė, Linas Balčiauskas and Laima Balčiauskienė

Diversity 2021, 13(3), 134; https://doi.org/10.3390/d13030134 - 20 Mar 2021

Cited by 11 | Viewed by 3184

Abstract

In 2018–2020, we performed a country-wide study of small mammals in commercial orchards and berry plantations with the aim of determining whether the common vole (Microtus arvalis) is a more suitable focal species than the field vole (M. agrestis) [...] Read more.

In 2018–2020, we performed a country-wide study of small mammals in commercial orchards and berry plantations with the aim of determining whether the common vole (Microtus arvalis) is a more suitable focal species than the field vole (M. agrestis) in the risk assessment of plant protection products in Lithuania (country of the Northern Zone). Common vole was present in 75% of orchards and in 80% of control habitats, accounting for 30% of all trapped individuals. The proportion of this species was stable between years and seasons. The pattern was in agreement with the intermediate disturbance hypothesis, i.e., highest in medium-aged crops, while lowest in habitats with high intensities of agricultural practices. The average relative abundance of common vole in autumn, 2.65 ± 0.52 individuals per 100 trap days, was three times higher than that in summer, with no differences recorded between crops and control habitats. Field vole was present in 30% of locations, only accounting for 2.1% of all trapped individuals. In central and eastern European countries, common vole is more widespread and abundant than field vole. In Lithuania, common vole dominates in orchards and natural habitats and is, therefore, the most relevant small mammal species for higher tier risk assessment. Full article

(This article belongs to the Special Issue Advances in Diversity and Conservation of Terrestrial Small Mammals)

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11 pages, 933 KiB

Open AccessEditor’s ChoiceArticle

Animal Forest Mortality: Following the Consequences of a Gorgonian Coral Loss on a Mediterranean Coralligenous Assemblage

by Luigi Piazzi, Fabrizio Atzori, Nicoletta Cadoni, Maria Francesca Cinti, Francesca Frau, Arianna Pansini, Federico Pinna, Patrizia Stipcich and Giulia Ceccherelli

Diversity 2021, 13(3), 133; https://doi.org/10.3390/d13030133 - 19 Mar 2021

Cited by 19 | Viewed by 3571

Abstract

In this work, the consequences of a local gorgonian coral mortality on the whole coralligenous assemblage were studied. A Before/After-Control/Impact sampling design was used: the structure of the coralligenous assemblage was compared before and after the gorgonian mortality event at the mortality site [...] Read more.

In this work, the consequences of a local gorgonian coral mortality on the whole coralligenous assemblage were studied. A Before/After-Control/Impact sampling design was used: the structure of the coralligenous assemblage was compared before and after the gorgonian mortality event at the mortality site and two control sites. At the mortality site, a relevant decrease in alpha and beta diversity occurred, with a shift from a stratified assemblage characterized by gorgonians and other invertebrates to an assemblage dominated by algal turfs; conversely, neither significant variations of the structure nor decrease in biodiversity were observed at the control sites. The assemblage shift involved the main taxa in different times: in autumn 2018, a large proportion of the plexaurid coral Paramuricea clavata died, but no significant changes were observed in the structure of the remaining assemblage. Then, in autumn 2019, algal turfs increased significantly and, one year later, the abundance of the gorgonian Eunicella cavolini and bryozoans collapsed. Although the mechanisms of the assemblage shift following gorgonian loss will remain uncertain and a cause-effect relationship cannot be derived, results suggest the need for detecting signs of gorgonian forests stress in monitoring programs, which should be considered early indicators of their condition. in the coralligenous monitoring programs for detecting any sign of gorgonian forests stress which should be considered an early indicator of the assemblage condition. Full article

(This article belongs to the Special Issue Biodiversity Conservation in Mediterranean Sea)

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14 pages, 2569 KiB

Open AccessEditor’s ChoiceReview

Annelid Diversity: Historical Overview and Future Perspectives

by María Capa and Pat Hutchings

Diversity 2021, 13(3), 129; https://doi.org/10.3390/d13030129 - 17 Mar 2021

Cited by 32 | Viewed by 25070

Abstract

Annelida is a ubiquitous, common and diverse group of organisms, found in terrestrial, fresh waters and marine environments. Despite the large efforts put into resolving the evolutionary relationships of these and other Lophotrochozoa, and the delineation of the basal nodes within the group, [...] Read more.

Annelida is a ubiquitous, common and diverse group of organisms, found in terrestrial, fresh waters and marine environments. Despite the large efforts put into resolving the evolutionary relationships of these and other Lophotrochozoa, and the delineation of the basal nodes within the group, these are still unanswered. Annelida holds an enormous diversity of forms and biological strategies alongside a large number of species, following Arthropoda, Mollusca, Vertebrata and perhaps Platyhelminthes, among the species most rich in phyla within Metazoa. The number of currently accepted annelid species changes rapidly when taxonomic groups are revised due to synonymies and descriptions of a new species. The group is also experiencing a recent increase in species numbers as a consequence of the use of molecular taxonomy methods, which allows the delineation of the entities within species complexes. This review aims at succinctly reviewing the state-of-the-art of annelid diversity and summarizing the main systematic revisions carried out in the group. Moreover, it should be considered as the introduction to the papers that form this Special Issue on Systematics and Biodiversity of Annelids. Full article

(This article belongs to the Special Issue Systematics and Diversity of Annelids)

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65 pages, 14488 KiB

Open AccessEditor’s ChoiceReview

On the Diversity of Phyllodocida (Annelida: Errantia), with a Focus on Glyceridae, Goniadidae, Nephtyidae, Polynoidae, Sphaerodoridae, Syllidae, and the Holoplanktonic Families

by Daniel Martin, Maria Teresa Aguado, María-Ana Fernández Álamo, Temir Alanovich Britayev, Markus Böggemann, María Capa, Sarah Faulwetter, Marcelo Veronesi Fukuda, Conrad Helm, Monica Angelica Varella Petti, Ascensão Ravara and Marcos A. L. Teixeira

Diversity 2021, 13(3), 131; https://doi.org/10.3390/d13030131 - 17 Mar 2021

Cited by 31 | Viewed by 16755

Abstract

Phyllodocida is a clade of errantiate annelids characterized by having ventral sensory palps, anterior enlarged cirri, axial muscular proboscis, compound chaetae (if present) with a single ligament, and of lacking dorsolateral folds. Members of most families date back to the Carboniferous, although the [...] Read more.

Phyllodocida is a clade of errantiate annelids characterized by having ventral sensory palps, anterior enlarged cirri, axial muscular proboscis, compound chaetae (if present) with a single ligament, and of lacking dorsolateral folds. Members of most families date back to the Carboniferous, although the earliest fossil was dated from the Devonian. Phyllodocida holds 27 well-established and morphologically homogenous clades ranked as families, gathering more than 4600 currently accepted nominal species. Among them, Syllidae and Polynoidae are the most specious polychaete groups. Species of Phyllodocida are mainly found in the marine benthos, although a few inhabit freshwater, terrestrial and planktonic environments, and occur from intertidal to deep waters in all oceans. In this review, we (1) explore the current knowledge on species diversity trends (based on traditional species concept and molecular data), phylogeny, ecology, and geographic distribution for the whole group, (2) try to identify the main knowledge gaps, and (3) focus on selected families: Alciopidae, Goniadidae, Glyceridae, Iospilidae, Lopadorrhynchidae, Polynoidae, Pontodoridae, Nephtyidae, Sphaerodoridae, Syllidae, Tomopteridae, Typhloscolecidae, and Yndolaciidae. The highest species richness is concentrated in European, North American, and Australian continental shelves (reflecting a strong sampling bias). While most data come from shallow coastal and surface environments most world oceans are clearly under-studied. The overall trends indicate that new descriptions are constantly added through time and that less than 10% of the known species have molecular barcode information available. Full article

(This article belongs to the Special Issue Systematics and Diversity of Annelids)

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73 pages, 8291 KiB

Open AccessEditor’s ChoiceReview

Fanworms: Yesterday, Today and Tomorrow

by María Capa, Elena Kupriyanova, João Miguel de Matos Nogueira, Andreas Bick and María Ana Tovar-Hernández

Diversity 2021, 13(3), 130; https://doi.org/10.3390/d13030130 - 17 Mar 2021

Cited by 35 | Viewed by 11624

Abstract

Sabellida Levinsen, 1883 is a large morphologically uniform group of sedentary annelids commonly known as fanworms. These annelids live in tubes made either of calcareous carbonate or mucus with agglutinated sediment. They share the presence of an anterior crown consisting of radioles and [...] Read more.

Sabellida Levinsen, 1883 is a large morphologically uniform group of sedentary annelids commonly known as fanworms. These annelids live in tubes made either of calcareous carbonate or mucus with agglutinated sediment. They share the presence of an anterior crown consisting of radioles and the division of the body into thorax and abdomen marked by a chaetal and fecal groove inversion. This study synthesises the current state of knowledge about the diversity of fanworms in the broad sense (morphological, ecological, species richness), the species occurrences in the different biogeographic regions, highlights latest surveys, provides guidelines for identification of members of each group, and describe novel methodologies for species delimitation. As some members of this group are well-known introduced pests, we address information about these species and their current invasive status. In addition, an overview of the current evolutionary hypothesis and history of the classification of members of Sabellida is presented. The main aim of this review is to highlight the knowledge gaps to stimulate research in those directions. Full article

(This article belongs to the Special Issue Systematics and Diversity of Annelids)

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38 pages, 5245 KiB

Open AccessEditor’s ChoiceArticle

Endocranial Anatomy of the Giant Extinct Australian Mihirung Birds (Aves, Dromornithidae)

by Warren D. Handley and Trevor H. Worthy

Diversity 2021, 13(3), 124; https://doi.org/10.3390/d13030124 - 15 Mar 2021

Cited by 15 | Viewed by 13515

Abstract

Dromornithids are an extinct group of large flightless birds from the Cenozoic of Australia. Their record extends from the Eocene to the late Pleistocene. Four genera and eight species are currently recognised, with diversity highest in the Miocene. Dromornithids were once considered ratites, [...] Read more.

Dromornithids are an extinct group of large flightless birds from the Cenozoic of Australia. Their record extends from the Eocene to the late Pleistocene. Four genera and eight species are currently recognised, with diversity highest in the Miocene. Dromornithids were once considered ratites, but since the discovery of cranial elements, phylogenetic analyses have placed them near the base of the anseriforms or, most recently, resolved them as stem galliforms. In this study, we use morphometric methods to comprehensively describe dromornithid endocranial morphology for the first time, comparing Ilbandornis woodburnei and three species of Dromornis to one another and to four species of extant basal galloanseres. We reveal that major endocranial reconfiguration was associated with cranial foreshortening in a temporal series along the Dromornis lineage. Five key differences are evident between the brain morphology of Ilbandornis and Dromornis, relating to the medial wulst, the ventral eminence of the caudoventral telencephalon, and morphology of the metencephalon (cerebellum + pons). Additionally, dromornithid brains display distinctive dorsal (rostral position of the wulst), and ventral morphology (form of the maxillomandibular [V₂+V₃], glossopharyngeal [IX], and vagus [X] cranial nerves), supporting hypotheses that dromornithids are more closely related to basal galliforms than anseriforms. Functional interpretations suggest that dromornithids were specialised herbivores that likely possessed well-developed stereoscopic depth perception, were diurnal and targeted a soft browse trophic niche. Full article

(This article belongs to the Special Issue Evolution and Palaeobiology of Flightless Birds)

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11 pages, 759 KiB

Open AccessFeature PaperEditor’s ChoiceArticle

Diversity of Dominant Soil Bacteria Increases with Warming Velocity at the Global Scale

by Yoshiaki Kanzaki and Kazuhiro Takemoto

Diversity 2021, 13(3), 120; https://doi.org/10.3390/d13030120 - 12 Mar 2021

Cited by 4 | Viewed by 4372

Abstract

Understanding global soil bacterial diversity is important because of its role in maintaining a healthy global ecosystem. Given the effects of environmental changes (e.g., warming and human impact) on the diversity of animals and plants, effects on soil bacterial diversity are expected; however, [...] Read more.

Understanding global soil bacterial diversity is important because of its role in maintaining a healthy global ecosystem. Given the effects of environmental changes (e.g., warming and human impact) on the diversity of animals and plants, effects on soil bacterial diversity are expected; however, they have been poorly evaluated at the global scale to date. Thus, in this study, we focused on the dominant soil bacteria, which are likely critical drivers of key soil processes worldwide, and investigated the effects of warming velocity and human activities on their diversity. Using a global dataset of bacteria, we performed spatial analysis to evaluate the effects of warming velocity and human activities, while statistically controlling for the potentially confounding effects of current climate and geographic parameters with global climate and geographic data. We demonstrated that the diversity of the dominant soil bacteria was influenced globally, not only by the aridity index (dryness) and pH but also by warming velocity from the Last Glacial Maximum (21,000 years ago) to the present, showing significant increases. The increase in bacterial diversity with warming velocity was particularly significant in forests and grasslands. An effect of human activity was also observed, but it was secondary to warming velocity. These findings provide robust evidence and advance our understanding of the effects of environmental changes (particularly global warming) on soil bacterial diversity at the global scale. Full article

(This article belongs to the Section Microbial Diversity and Culture Collections)

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24 pages, 2284 KiB

Open AccessEditor’s ChoiceArticle

Increasing Survival of Wild Macaw Chicks Using Foster Parents and Supplemental Feeding

by Gabriela Vigo-Trauco, Rony Garcia-Anleu and Donald J. Brightsmith

Diversity 2021, 13(3), 121; https://doi.org/10.3390/d13030121 - 12 Mar 2021

Cited by 9 | Viewed by 8867

Abstract

The use of foster parents has great potential to help the recovery of highly endangered bird species. However, few studies have shown how to successfully use these techniques in wild populations. Scarlet Macaws (Ara macao macao) in Perú hatch 2–4 chicks [...] Read more.

The use of foster parents has great potential to help the recovery of highly endangered bird species. However, few studies have shown how to successfully use these techniques in wild populations. Scarlet Macaws (Ara macao macao) in Perú hatch 2–4 chicks per nest but about 24% of all chicks die of starvation and on average just 1.4 of them fledge per successful nest. In this study we develop and test new techniques to increase survival of wild Scarlet Macaw chicks by reducing chick starvation. We hypothesized that using foster parents would increase the survival of chicks at risk of starvation and increase overall reproductive success. Our results show that all relocated macaw chicks were successfully accepted by their foster parents (n = 28 chicks over 3 consecutive breeding seasons) and 89% of the relocated chicks fledged. Overall, we increased fledging success per available nest from 17% (2000 to 2016 average) to 25% (2017 to 2019) and decreased chick death by starvation from 19% to 4%. These findings show that the macaw foster parents technique and post relocation supplemental feeding provide a promising management tool to aid wild parrot population recovery in areas with low reproductive success. Full article

(This article belongs to the Special Issue Ecology and Conservation of Parrots in Their Native and Non-Native Ranges)

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16 pages, 1239 KiB

Open AccessEditor’s ChoiceArticle

Long-Term Monitoring Reveals Differential Responses of Mussel and Host Fish Communities in a Biodiversity Hotspot

by Irene Sanchez Gonzalez, Garrett W. Hopper, Jamie Bucholz and Carla L. Atkinson

Diversity 2021, 13(3), 122; https://doi.org/10.3390/d13030122 - 12 Mar 2021

Cited by 11 | Viewed by 4298

Abstract

Biodiversity hotspots can serve as protected areas that aid in species conservation. Long-term monitoring of multiple taxonomic groups within biodiversity hotspots can offer insight into factors influencing their dynamics. Mussels (Bivalvia: Unionidae) and fish are highly diverse and imperiled groups of organisms with [...] Read more.

Biodiversity hotspots can serve as protected areas that aid in species conservation. Long-term monitoring of multiple taxonomic groups within biodiversity hotspots can offer insight into factors influencing their dynamics. Mussels (Bivalvia: Unionidae) and fish are highly diverse and imperiled groups of organisms with contrasting life histories that should influence their response to ecological factors associated with local and global change. Here we use historical and contemporary fish and mussel survey data to assess fish and mussel community changes over a 33 year period (1986–2019) and relationships between mussel abundance and their host fish abundance in Bogue Chitto Creek, a tributary of the Alabama River and a biodiversity hotspot. Mussel abundance declined by ~80% and community composition shifted, with eight species previously recorded not found in 2019, and a single individual of the endangered Pleurobema decisum. Fish abundances increased and life history strategies in the community appeared stable and there was no apparent relationship between mussel declines and abundance of host fish. Temporal variation in the proportion of life history traits composing mussel assemblages was also indicative of the disturbances specifically affecting the mussel community. However, changes and declines in mussel assemblages in Bogue Chitto Creek cannot be firmly attributed to any specific factor or events because of gaps in historical environmental and biological data. We believe that mobility differences contributed to differential responses of fish and mussel communities to stressors including habitat degradation, recent droughts and invasive species. Overall, our work indicates that monitoring biodiversity hotspots using hydrological measurements, standardized survey methods and monitoring invasive species abundance would better identify the effects of multiple and interactive stressors that impact disparate taxonomic groups in freshwater ecosystems. Full article

(This article belongs to the Special Issue Freshwater Mollusk Conservation)

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19 pages, 4525 KiB

Open AccessEditor’s ChoiceArticle

Prevalence and Diversity of Avian Haemosporidians May Vary with Anthropogenic Disturbance in Tropical Habitats in Myanmar

by Jaime Muriel, Alfonso Marzal, Sergio Magallanes, Luz García-Longoria, Marcela Suarez-Rubio, Paul J. J. Bates, Htet Htet Lin, Aye Nyein Soe, Khin Swe Oo, Aung Aung Aye, Naw Dolly Wilbur, Ni Ni Win, Yupa Tin Soe, Khaing Khin Linn and Swen C. Renner

Diversity 2021, 13(3), 111; https://doi.org/10.3390/d13030111 - 5 Mar 2021

Cited by 18 | Viewed by 4735

Abstract

Avian malaria and related haemosporidians (genera Haemoproteus, Plasmodium and Leucocytozoon) infect most clades of bird. Although these parasites are present in almost all continents, they have been irregularly studied across different geographical regions. Despite the high bird diversity in Asia, the [...] Read more.

Avian malaria and related haemosporidians (genera Haemoproteus, Plasmodium and Leucocytozoon) infect most clades of bird. Although these parasites are present in almost all continents, they have been irregularly studied across different geographical regions. Despite the high bird diversity in Asia, the diversity of avian haemosporidians in this region is largely unknown. Moreover, anthropogenic changes to habitats in tropical regions may have a profound impact on the overall composition of haemosporidian communities. Here we analyzed the diversity and host association of bird haemosporidians from areas with different degrees of anthropogenic disturbance in Myanmar, revealing an unexplored diversity of these parasites (27% of newly-discovered haemosporidian lineages, and 64% of new records of host–parasite assemblages) in these tropical environments. This newly discovered diversity will be valuable for detecting host range and transmission areas of haemosporidian parasites. We also found slightly higher haemosporidian prevalence and diversity in birds from paddy fields than in individuals from urban areas and hills, thus implying that human alteration of natural environments may affect the dynamics of vector-borne diseases. These outcomes provide valuable insights for biodiversity conservation management in threatened tropical ecosystems. Full article

(This article belongs to the Special Issue Bird Parasites)

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9 pages, 462 KiB

Open AccessFeature PaperEditor’s ChoiceReview

An Overview of DNA-Based Applications for the Assessment of Benthic Macroinvertebrates Biodiversity in Mediterranean Aquatic Ecosystems

by Eftychia Tzafesta, Francesco Zangaro, Valeria Specchia and Maurizio Pinna

Diversity 2021, 13(3), 112; https://doi.org/10.3390/d13030112 - 5 Mar 2021

Cited by 14 | Viewed by 5539

Abstract

The loss of aquatic biodiversity is increasing at a rapid rate globally. There is a worldwide effort to protect, preserve and restore aquatic ecosystems. For efficient biodiversity monitoring and reliable management tools, comprehensive biodiversity data are required. The abundance and species diversity of [...] Read more.

The loss of aquatic biodiversity is increasing at a rapid rate globally. There is a worldwide effort to protect, preserve and restore aquatic ecosystems. For efficient biodiversity monitoring and reliable management tools, comprehensive biodiversity data are required. The abundance and species diversity of benthic macroinvertebrates are commonly used as indicators of the aquatic ecosystem condition. Currently, macroinvertebrate species biodiversity assessment is based on morpho-taxonomy, which could be enhanced by recent advances in DNA-based tools for species identification. In particular, DNA metabarcoding has the potential to identify simultaneously many different taxa in a pool of species and to improve aquatic biomonitoring significantly, especially for indicator species. This review is focused on the current state of DNA-based aquatic biomonitoring using benthic macroinvertebrates in the Mediterranean region. Full article

(This article belongs to the Special Issue Aquatic Restoration Ecology and Monitoring)

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15 pages, 4748 KiB

Open AccessEditor’s ChoiceReview

Cetacean Strandings and Museum Collections: A Focus on Sicily Island Crossroads for Mediterranean Species

by Sabrina Lo Brutto, Andrea Calascibetta, Gianni Pavan and Gaspare Buffa

Diversity 2021, 13(3), 104; https://doi.org/10.3390/d13030104 - 26 Feb 2021

Cited by 7 | Viewed by 4585

Abstract

The study examined the extent of the cetacean strandings in Italy, with a particular focus on Sicily Island. The paper aimed to contribute to the description of a pattern that contemplates the “regular and rare” cetacean species passage along the Sicilian coast. The [...] Read more.

The study examined the extent of the cetacean strandings in Italy, with a particular focus on Sicily Island. The paper aimed to contribute to the description of a pattern that contemplates the “regular and rare” cetacean species passage along the Sicilian coast. The estimate of marine cetacean strandings was extrapolated from the National Strandings Data Bank (BDS—Banca Dati Spiaggiamenti) and evaluated according to a subdivision in three coastal subregions: the Tyrrhenian sub-basin (northern Sicilian coast), the Ionian sub-basin (eastern Sicilian coast), and the Channel of Sicily (southern Sicilian coast). Along the Italian coast, more than 4880 stranding events have been counted in the period 1990–2019. Most of these were recorded in five Italian regions: Apulia, Sicily, Sardinia, Tuscany, and Calabria. Approximately 15% of the recorded strandings in Italy occurred on the Sicilian coast. In Sicily Island, 725 stranded cetaceans were recorded in 709 stranding events, resulting in approximately 20 carcasses every year; the total number of specimens identified to species level was 539. The distribution along the Sicilian coast was the following: 312 recorded in the Tyrrhenian sub-basin, 193 in the Ionian sub-basin, and 220 in the Channel of Sicily. Stenella coeruleoalba was the species that can be considered as the stable record along the time-lapse investigated, and some rare species have been recorded as well. The role of Sicily Island as a sentinel territory of the cetacean distribution for the central Mediterranean Sea and as a region receiving a marine resource suitable for the scientific research and cetological museum collections is discussed herein. Full article

(This article belongs to the Special Issue Historical and Current Diversity Patterns of Mediterranean Marine Species)

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12 pages, 1599 KiB

Open AccessEditor’s ChoiceArticle

Origins of Six Species of Butterflies Migrating through Northeastern Mexico: New Insights from Stable Isotope (δ²H) Analyses and a Call for Documenting Butterfly Migrations

by Keith A. Hobson, Jackson W. Kusack and Blanca X. Mora-Alvarez

Diversity 2021, 13(3), 102; https://doi.org/10.3390/d13030102 - 25 Feb 2021

Cited by 18 | Viewed by 4368

Abstract

Determining migratory connectivity within and among diverse taxa is crucial to their conservation. Insect migrations involve millions of individuals and are often spectacular. However, in general, virtually nothing is known about their structure. With anthropogenically induced global change, we risk losing most of [...] Read more.

Determining migratory connectivity within and among diverse taxa is crucial to their conservation. Insect migrations involve millions of individuals and are often spectacular. However, in general, virtually nothing is known about their structure. With anthropogenically induced global change, we risk losing most of these migrations before they are even described. We used stable hydrogen isotope (δ²H) measurements of wings of seven species of butterflies (Libytheana carinenta, Danaus gilippus, Phoebis sennae, Asterocampa leilia, Euptoieta claudia, Euptoieta hegesia, and Zerene cesonia) salvaged as roadkill when migrating in fall through a narrow bottleneck in northeast Mexico. These data were used to depict the probabilistic origins in North America of six species, excluding the largely local E. hegesia. We determined evidence for long-distance migration in four species (L. carinenta, E. claudia, D. glippus, Z. cesonia) and present evidence for panmixia (Z. cesonia), chain (Libytheana carinenta), and leapfrog (Danaus gilippus) migrations in three species. Our investigation underlines the utility of the stable isotope approach to quickly establish migratory origins and connectivity in butterflies and other insect taxa, especially if they can be sampled at migratory bottlenecks. We make the case for a concerted effort to atlas butterfly migrations using the stable isotope approach. Full article

(This article belongs to the Collection Stable Isotope Ecology)

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23 pages, 4037 KiB

Open AccessEditor’s ChoiceReview

Annelids in Extreme Aquatic Environments: Diversity, Adaptations and Evolution

by Christopher J. Glasby, Christer Erséus and Patrick Martin

Diversity 2021, 13(2), 98; https://doi.org/10.3390/d13020098 - 23 Feb 2021

Cited by 35 | Viewed by 21447

Abstract

We review the variety of morphological, physiological and behavioral modifications that annelids have acquired to cope with environments either unsuitable for, or on the limits of, survival for most animals. We focus on polychaetes (excluding sipunculans and echiurans) and clitellates (oligochaetes and leeches) [...] Read more.

We review the variety of morphological, physiological and behavioral modifications that annelids have acquired to cope with environments either unsuitable for, or on the limits of, survival for most animals. We focus on polychaetes (excluding sipunculans and echiurans) and clitellates (oligochaetes and leeches) and source information mostly from the primary literature. We identified many modifications common to both polychaetes and clitellates, and others that are specific to one or the other group. For example, certain land-adapted polychaetes show reduction in nuchal organs, epidermal ciliation and receptor cells, and other coastal polychaetes use adhesive glands and glue-reinforced tubes to maintain position in surf zones, while oligochaetes, with their simple body plans, appear to be ‘pre-adapted’ to life underground. Modifications common to both groups include the ability to construct protective cocoons, make cryoprotective substances such as antifreeze and heat shock proteins, develop gills, transform their bodies into a home for symbiotic chemoautotrophic bacteria, metabolize contaminants, and display avoidance behaviors. Convergent evolution in both directions has enabled annelids to transition from salt water to freshwater, sea to land via beaches, freshwater to soil, and surface water to subterranean water. A superficially simple worm-like body and a mostly benthic/burrowing lifestyle has facilitated radiation into every conceivable environment, making annelids among the most common and diverse animal groups on the planet. Full article

(This article belongs to the Special Issue Systematics and Diversity of Annelids)

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14 pages, 1857 KiB

Open AccessEditor’s ChoiceArticle

The Diverse Assemblage of Fungal Endophytes from Orchids in Madagascar Linked to Abiotic Factors and Seasonality

by Kazutomo Yokoya, Lawrence W. Zettler, Jake Bell, Jonathan P. Kendon, Alison S. Jacob, Emily Schofield, Landy Rajaovelona and Viswambharan Sarasan

Diversity 2021, 13(2), 96; https://doi.org/10.3390/d13020096 - 23 Feb 2021

Cited by 9 | Viewed by 4795

Abstract

The inselbergs of the Central Highlands of Madagascar are one of many ‘micro-hotspots’ of biodiversity on the island, particularly for Orchidaceae. In this region are several genera that have a large number of endemic species that are in serious decline or edging towards [...] Read more.

The inselbergs of the Central Highlands of Madagascar are one of many ‘micro-hotspots’ of biodiversity on the island, particularly for Orchidaceae. In this region are several genera that have a large number of endemic species that are in serious decline or edging towards extinction. Studies relating to diversity of orchids and their fungal partners (both mycorrhizal and non-mycorrhizal root associates) deserve more attention, as climate change and human induced decline in resilience of species in the wild is at an all-time high. Identification of mycorrhizal fungi (MF) via conventional seed baited-protocorms has limitations for large scale studies and its application for time-bound conservation projects. The paper describes the value of understanding fungal diversity in the roots of orchids at different stages of maturity. The first part of the study was a preliminary investigation mainly to identify culturable Rhizoctonia endophytes, and the second part looked at all life forms of available taxa together with associated soil characteristics. We isolated and identified 19 putative MF from 18 of the 50 taxa spread over an area of 250 sq. km, covering three life forms, growth phases of the orchid taxa, and habitat types. In the rest of the taxa, we were unable to detect any putative MF, but had varying numbers of non-mycorrhizal endophytes. We also found that diversity of putative MF was higher in plants from soils with the lowest P levels recorded. Putative mycorrhizal OTUs were predominantly from the Tulasnella lineage, followed by Ceratobasidium and Serendipita. Within a small subset of samples, a difference in colonised endophytes depending on the collection season was observed. In vitro germination studies using 10 OTUs of mycorrhizal fungi in 14 orchid species showed mostly generalist associations. When orchid seed and fungal sources were studied irrespective of habitat, life form, and distance from each other (orchid seed and fungal source), compatibility for symbiotic seed germination was observed in most cases. Issues with the identification of compatible MF and symbiotic system of seed germination are discussed. Full article

(This article belongs to the Special Issue The Ecology and Diversity of Orchids)

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18 pages, 2695 KiB

Open AccessEditor’s ChoiceArticle

Land Use Effects on Airborne Bacterial Communities Are Evident in Both Near-Surface and Higher-Altitude Air

by Allison M. Spring, Kenneth D. Domingue, Thomas V. Kerber, Margaret M. Mooney, Rebecca L. Hale, Kristina M. Lemmer and Kathryn M. Docherty

Diversity 2021, 13(2), 85; https://doi.org/10.3390/d13020085 - 18 Feb 2021

Cited by 6 | Viewed by 3469

Abstract

Land use influences the composition of near-surface airborne bacterial communities, and bacteria can be transported through the atmosphere at global scales. The atmosphere mixes vertically, but rigorously assessing whether the effects of land use on atmospheric communities extends to higher altitudes requires examining [...] Read more.

Land use influences the composition of near-surface airborne bacterial communities, and bacteria can be transported through the atmosphere at global scales. The atmosphere mixes vertically, but rigorously assessing whether the effects of land use on atmospheric communities extends to higher altitudes requires examining communities from multiple altitudes collected at a stable location and timeframe. In this study, we collected near-surface (<2 m) and higher-altitude (150 m) air samples from three sites in an agricultural/developed location and a forested/undeveloped location. We used bacterial 16S rRNA amplicon sequencing to compare communities and predict functionality by altitude. Higher-altitude and near-surface communities did not differ in composition within each location. Communities collected above the undeveloped location were equally variable at both altitudes; higher-altitude samples from the developed location predominantly contained Firmicutes and were less variable than near-surface samples. We also compared airborne taxa to those present in soil and snow. Communities from higher-altitude samples above the developed location contained fewer overlapping taxa with soil and snow sources, and overlapping Operational Taxonomic Units (OTUs) among the three sources differed by location. Our results suggest that land use affects the composition of both near-surface and higher-altitude airborne bacterial communities and, therefore, may influence broad bacterial dispersal patterns. This small-scale pilot study provides a framework for simultaneously examining local and regional airborne microbial communities that can be applied to larger studies or studies using different types of samplers. Full article

(This article belongs to the Special Issue Microbial Ecology in the Atmosphere)

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58 pages, 25268 KiB

Open AccessEditor’s ChoiceArticle

Interstitial Annelida

by Katrine Worsaae, Alexandra Kerbl, Maikon Di Domenico, Brett C. Gonzalez, Nicolas Bekkouche and Alejandro Martínez

Diversity 2021, 13(2), 77; https://doi.org/10.3390/d13020077 - 12 Feb 2021

Cited by 19 | Viewed by 8010

Abstract

Members of the following marine annelid families are found almost exclusively in the interstitial environment and are highly adapted to move between sand grains, relying mostly on ciliary locomotion: Apharyngtidae n. fam., Dinophilidae, Diurodrilidae, Nerillidae, Lobatocerebridae, Parergodrilidae, Polygordiidae, Protodrilidae, Protodriloididae, Psammodrilidae and Saccocirridae. [...] Read more.

Members of the following marine annelid families are found almost exclusively in the interstitial environment and are highly adapted to move between sand grains, relying mostly on ciliary locomotion: Apharyngtidae n. fam., Dinophilidae, Diurodrilidae, Nerillidae, Lobatocerebridae, Parergodrilidae, Polygordiidae, Protodrilidae, Protodriloididae, Psammodrilidae and Saccocirridae. This article provides a review of the evolution, systematics, and diversity of these families, with the exception of Parergodrilidae, which was detailed in the review of Orbiniida by Meca, Zhadan, and Struck within this Special Issue. While several of the discussed families have previously only been known by a few described species, recent surveys inclusive of molecular approaches have increased the number of species, showing that all of the aforementioned families exhibit a high degree of cryptic diversity shadowed by a limited number of recognizable morphological traits. This is a challenge for studies of the evolution, taxonomy, and diversity of interstitial families as well as for their identification and incorporation into ecological surveys. By compiling a comprehensive and updated review on these interstitial families, we hope to promote new studies on their intriguing evolutionary histories, adapted life forms and high and hidden diversity. Full article

(This article belongs to the Special Issue Systematics and Diversity of Annelids)

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18 pages, 2793 KiB

Open AccessEditor’s ChoiceArticle

Avian Haemosporidian Diversity on Sardinia: A First General Assessment for the Insular Mediterranean

by Irene Pellegrino, Luca Ilahiane, Giovanni Boano, Marco Cucco, Marco Pavia, Heather L. Prestridge and Gary Voelker

Diversity 2021, 13(2), 75; https://doi.org/10.3390/d13020075 - 10 Feb 2021

Cited by 15 | Viewed by 4103

Abstract

The Western Palearctic is one of the most investigated regions for avian haemosporidian parasites (Haemoproteus, Plasmodium and Leucocytozoon), yet geographic gaps in our regional knowledge remain. Here, we report the first haemosporidian screening of the breeding birds from Sardinia (the [...] Read more.

The Western Palearctic is one of the most investigated regions for avian haemosporidian parasites (Haemoproteus, Plasmodium and Leucocytozoon), yet geographic gaps in our regional knowledge remain. Here, we report the first haemosporidian screening of the breeding birds from Sardinia (the second-largest Mediterranean Island and a biodiversity hotspot), and the first for the insular Mediterranean in general. We examined the occurrence of haemosporidians by amplifying their mtDNA cytb gene in 217 breeding birds, belonging to 32 species. The total prevalence of infected birds was 55.3%, and of the 116 haplotypes recovered, 84 were novel. Despite the high number of novel lineages, phylogenetic analysis did not highlight Sardinia-specific clades; instead, some Sardinian lineages were more closely related to lineages previously recovered from continental Europe. Host-parasite network analysis indicated a specialized host-parasite community. Binomial generalized linear models (GLMs), performed at the community level, suggested an elevational effect on haemosporidian occurrence probability (negative for Haemoproteus; positive for Leucocytozoon) likely due to differences in the abundance of insect vectors at different elevations. Furthermore, a GLM revealed that sedentary birds showed a higher probability of being infected by novel haplotypes and long-distance migrants showed a lower probability of novel haplotype infection. We hypothesize that the high diversity of haemosporidians is linked to the isolation of breeding bird populations on Sardinia. This study adds to the growing knowledge on haemosporidians lineage diversity and distribution in insular environments and presents new insights on potential host-parasite associations. Full article

(This article belongs to the Special Issue Bird Parasites)

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18 pages, 402 KiB

Open AccessFeature PaperEditor’s ChoiceReview

Effects of Human Disturbance on Terrestrial Apex Predators

by Andrés Ordiz, Malin Aronsson, Jens Persson, Ole-Gunnar Støen, Jon E. Swenson and Jonas Kindberg

Diversity 2021, 13(2), 68; https://doi.org/10.3390/d13020068 - 9 Feb 2021

Cited by 47 | Viewed by 11631

Abstract

The effects of human disturbance spread over virtually all ecosystems and ecological communities on Earth. In this review, we focus on the effects of human disturbance on terrestrial apex predators. We summarize their ecological role in nature and how they respond to different [...] Read more.

The effects of human disturbance spread over virtually all ecosystems and ecological communities on Earth. In this review, we focus on the effects of human disturbance on terrestrial apex predators. We summarize their ecological role in nature and how they respond to different sources of human disturbance. Apex predators control their prey and smaller predators numerically and via behavioral changes to avoid predation risk, which in turn can affect lower trophic levels. Crucially, reducing population numbers and triggering behavioral responses are also the effects that human disturbance causes to apex predators, which may in turn influence their ecological role. Some populations continue to be at the brink of extinction, but others are partially recovering former ranges, via natural recolonization and through reintroductions. Carnivore recovery is both good news for conservation and a challenge for management, particularly when recovery occurs in human-dominated landscapes. Therefore, we conclude by discussing several management considerations that, adapted to local contexts, may favor the recovery of apex predator populations and their ecological functions in nature. Full article

(This article belongs to the Special Issue Effects of Human Disturbance on Ecological Communities)

17 pages, 4152 KiB

Open AccessEditor’s ChoiceArticle

The Analysis of Italian Plant Agrobiodiversity Databases Reveals That Hilly and Sub-Mountain Areas Are Hotspots of Herbaceous Landraces

by Luca Giupponi, Davide Pedrali, Valeria Leoni, Alessia Rodari and Annamaria Giorgi

Diversity 2021, 13(2), 70; https://doi.org/10.3390/d13020070 - 9 Feb 2021

Cited by 23 | Viewed by 5821

Abstract

Landraces are an agri-food and historical-cultural heritage but are undergoing losses worldwide. Italy is taking action to counteract this problem by following European guidelines. One of the most important measures is the Agrobiodiversity National Register (ANR), but 12 Italian regions currently appear without [...] Read more.

Landraces are an agri-food and historical-cultural heritage but are undergoing losses worldwide. Italy is taking action to counteract this problem by following European guidelines. One of the most important measures is the Agrobiodiversity National Register (ANR), but 12 Italian regions currently appear without any landraces and around 80% of the landraces listed are trees, with less detailed data on herbaceous species. The aim of this study is to investigate the situation for Italian herbaceous landraces preserved on farms (in situ) by merging and analyzing data contained in the main databases on plant agrobiodiversity in Italy. Data were georeferenced, organized by botanic families and Italian regions, and analyzed by GIS and R. A total of 1615 herbaceous landraces were found (versus the 416 recorded in the ANR). Poaceae, Fabaceae, and Solanaceae together comprise 70% of all herbaceous landraces and are mostly preserved/grown in areas between 150 and 800 m a.s.l. Some hilly and sub-mountain areas of the Apennines and the Alps are hotspots of herbaceous landraces due to anthropic and environmental factors. The results of this research will be useful to enrich the ANR and trigger actions of characterization, conservation, and promotion of these plant resources. Full article

(This article belongs to the Section Plant Diversity)

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19 pages, 6211 KiB

Open AccessEditor’s ChoiceArticle

Genesis, Evolution, and Genetic Diversity of the Hexaploid, Narrow Endemic Centaurea tentudaica

by Lucía D. Moreyra, Francisco Márquez, Alfonso Susanna, Núria Garcia-Jacas, Francisco María Vázquez and Jordi López-Pujol

Diversity 2021, 13(2), 72; https://doi.org/10.3390/d13020072 - 9 Feb 2021

Cited by 6 | Viewed by 4182

Abstract

Within the genus Centaurea L., polyploidy is very common, and it is believed that, as to all angiosperms, it was key in the history of its diversification and evolution. Centaurea tentudaica is a hexaploid from subsect. Chamaecyanus of unknown origin. In this study, [...] Read more.

Within the genus Centaurea L., polyploidy is very common, and it is believed that, as to all angiosperms, it was key in the history of its diversification and evolution. Centaurea tentudaica is a hexaploid from subsect. Chamaecyanus of unknown origin. In this study, we examined the possible autopolyploid or allopolyploid origin using allozymes and sequences of three molecular markers: nuclear-ribosomic region ETS, and low-copy genes AGT1 and PgiC. We also included three species geographically and morphologically close to C. tentudaica: C. amblensis, C. galianoi, and C. ornata. Neighbor-Net and Bayesian analyses show a close relationship between C. amblensis and C. tentudaica and no relationship to any of the other species, which suggest that C. tentudaica is an autopolyploid of C. amblensis. Allozyme banding pattern also supports the autopolyploidy hypothesis and shows high levels of genetic diversity in the polyploid, which could suggest multiple origins by recurrent crosses of tetraploid and diploid cytotypes of C. amblensis. Environmental niche modeling was used to analyze the distribution of the possible parental species during the present, Last Glacial Maximum (LGM), Last Interglacial Period (LIG), and Penultimate Glacial Maximum (PGM) environmental conditions. Supporting the molecular suggestions that C. tentudaica originated from C. amblensis, environmental niche modeling confirms that past distribution of C. amblensis overlapped with the distribution of C. tentudaica. Full article

(This article belongs to the Special Issue Conservation Genetics and Biogeography of Seed Plant Species)

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54 pages, 7357 KiB

Open AccessFeature PaperEditor’s ChoiceReview

The Current State of Eunicida (Annelida) Systematics and Biodiversity

by Joana Zanol, Luis F. Carrera-Parra, Tatiana Menchini Steiner, Antonia Cecilia Z. Amaral, Helena Wiklund, Ascensão Ravara and Nataliya Budaeva

Diversity 2021, 13(2), 74; https://doi.org/10.3390/d13020074 - 9 Feb 2021

Cited by 37 | Viewed by 12578

Abstract

In this study, we analyze the current state of knowledge on extant Eunicida systematics, morphology, feeding, life history, habitat, ecology, distribution patterns, local diversity and exploitation. Eunicida is an order of Errantia annelids characterized by the presence of ventral mandibles and dorsal maxillae [...] Read more.

In this study, we analyze the current state of knowledge on extant Eunicida systematics, morphology, feeding, life history, habitat, ecology, distribution patterns, local diversity and exploitation. Eunicida is an order of Errantia annelids characterized by the presence of ventral mandibles and dorsal maxillae in a ventral muscularized pharynx. The origin of Eunicida dates back to the late Cambrian, and the peaks of jaw morphology diversity and number of families are in the Ordovician. Species richness is heterogeneous among the seven recent families, with more than half of the valid species belonging to the Eunicidae + Onuphidae clade, one of the latest clades to diverge. Eunicidans inhabit soft and hard substrates from intertidal to deep waters in all oceans. The few freshwater species are restricted to Histriobdellidae, a family exclusively commensal/parasite of crustaceans. The reproductive biology, development and ecology of most families are poorly known and the information available suggests low dispersal ability. However, all families have records of widely distributed species. Scrutiny of these wide distributions has often revealed the presence of exotic species or more than one species. The exploration of the deep-sea and of new habitats has led to recent descriptions of new species. Furthermore, the revision of type specimens, the examination of new morphological features and the use of molecular data have revealed hidden biodiversity under unjustified synonyms, poor understanding of morphological features and incomplete descriptions. Molecular studies are still very few or nonexistent for the families Histriobdellidae, Hartmaniellidae, Lumbrineridae and Oenonidae. The integration of new methodologies for morphological and molecular study, along with information on biological and ecological traits appears to be the path to improve the knowledge on the diversity of Eunicida. Full article

(This article belongs to the Special Issue Systematics and Diversity of Annelids)

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27 pages, 4614 KiB

Open AccessEditor’s ChoiceArticle

Impact to Coral Reef Populations at Hā‘ena and Pila‘a, Kaua‘i, Following a Record 2018 Freshwater Flood Event

by Ku’ulei S. Rodgers, Matthew P. Stefanak, Anita O. Tsang, Justin J. Han, Andrew T. Graham and Yuko O. Stender

Diversity 2021, 13(2), 66; https://doi.org/10.3390/d13020066 - 5 Feb 2021

Cited by 8 | Viewed by 3985

Abstract

Many corals and reef-dwelling organisms are susceptible to the impacts of storm events, which are typically characterized by large inputs of freshwater, sediment, and nutrients. The majority of storm effects are focused on shallow, nearshore reef flats, as low salinity and sedimentation tend [...] Read more.

Many corals and reef-dwelling organisms are susceptible to the impacts of storm events, which are typically characterized by large inputs of freshwater, sediment, and nutrients. The majority of storm effects are focused on shallow, nearshore reef flats, as low salinity and sedimentation tend to dissipate with depth and distance from shore. In April 2018, record rainfall on the northern coast of Kaua‘i caused extensive flooding and landslides, introducing large amounts of freshwater and sediment into nearshore reefs. Using benthic and fish transects from 2016–2019 and temperature, sediment, and rainfall data gathered pre- and post-flood, this study aimed to quantify and explicate the effects of flooding on the various biotic populations of two reef habitats at Pila‘a and Hā‘ena, Kaua‘i. Results from the shallow Pila‘a reef suggest sediment and freshwater-associated declines in mean urchin abundance (−52.0%) and increases in mean coral bleaching (+54.5%) at the flood-prone eastern sector. Additionally, decreases in mean urchin (−65.7%) and fish (−42.3%) populations were observed at shallow Hā‘ena transects, but not deep sites, supporting the occurrence of depth-specific affliction. Multivariate community-level analyses affirmed much of these results, showing a significant shift in community structure before and after the flood at both Pila‘a and Hā‘ena. The outcomes of this study are pertinent to strategic design and solution development by local aquatic resource managers, especially as anthropogenic climate change continues to increase the frequency, duration, and intensity of storm events. Full article

(This article belongs to the Special Issue Coral Reef Ecology and Biodiversity)

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20 pages, 810 KiB

Open AccessEditor’s ChoiceReview

An Overview of the Helminths of Moor Frog Rana arvalis Nilsson, 1842 (Amphibia: Anura) in the Volga Basin

by Igor V. Chikhlyaev and Alexander B. Ruchin

Diversity 2021, 13(2), 61; https://doi.org/10.3390/d13020061 - 4 Feb 2021

Cited by 16 | Viewed by 3653

Abstract

This is the first review of the helminth fauna of the moor frog Rana arvalis Nilsson, 1842 from the Volga river basin (Russia). The article summarizes the authors’ and literature data on the helminthic fauna of this species. The method of complete helminthological [...] Read more.

This is the first review of the helminth fauna of the moor frog Rana arvalis Nilsson, 1842 from the Volga river basin (Russia). The article summarizes the authors’ and literature data on the helminthic fauna of this species. The method of complete helminthological dissection was used. Thirthy-eight helminth species were recorded from three classes: Cestoda (1), Trematoda (28), and Chromadorea (9). Nine helminth species are new to the moor frog in Russia: trematodes Gorgodera varsoviensis Sinitzin, 1905, Strigea falconis Szidat, 1928, larvae, Neodiplostomum spathoides Dubois, 1937, larvae, Tylodelphys excavata (Rudolphi, 1803), larvae, Pharyngostomum cordatum (Diesing, 1850), larvae, Astiotrema monticelli Stossich, 1904, larvae and Encyclometra colubrimurorum (Rudolphi, 1819), larvae, nematodes Strongyloides spiralis Grabda-Kazubska, 1978 and Icosiella neglecta (Diesing, 1851). The cestode Spirometra erinacei (Rudolphi, 1918), larvae were observed of this amphibian species in the Volga basin for the first time. The nematodes Rhabdias bufonis, Oswaldocruzia filiformis, Cosmocerca ornata and the trematode Haplometra cylindracea form the core of the helminth fauna of the moor frog. Information on species of helminths includes systematic position, localization, areas of detection, type and scheme of life cycle, geographical distribution, and degree of specificity to host amphibians. Full article

(This article belongs to the Special Issue Diversity and Ecological Impact of Parasites on Amphibians and Reptiles)

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8 pages, 251 KiB

Open AccessEditor’s ChoiceOpinion

Reducing the Extinction Risk of Populations Threatened by Infectious Diseases

by Gael L. Glassock, Catherine E. Grueber, Katherine Belov and Carolyn J. Hogg

Diversity 2021, 13(2), 63; https://doi.org/10.3390/d13020063 - 4 Feb 2021

Cited by 12 | Viewed by 6191

Abstract

Extinction risk is increasing for a range of species due to a variety of threats, including disease. Emerging infectious diseases can cause severe declines in wild animal populations, increasing population fragmentation and reducing gene flow. Small, isolated, host populations may lose adaptive potential [...] Read more.

Extinction risk is increasing for a range of species due to a variety of threats, including disease. Emerging infectious diseases can cause severe declines in wild animal populations, increasing population fragmentation and reducing gene flow. Small, isolated, host populations may lose adaptive potential and become more susceptible to extinction due to other threats. Management of the genetic consequences of disease-induced population decline is often necessary. Whilst disease threats need to be addressed, they can be difficult to mitigate. Actions implemented to conserve the Tasmanian devil (Sarcophilus harrisii), which has suffered decline to the deadly devil facial tumour disease (DFTD), exemplify how genetic management can be used to reduce extinction risk in populations threatened by disease. Supplementation is an emerging conservation technique that may benefit populations threatened by disease by enabling gene flow and conserving their adaptive potential through genetic restoration. Other candidate species may benefit from genetic management via supplementation but concerns regarding outbreeding depression may prevent widespread incorporation of this technique into wildlife disease management. However, existing knowledge can be used to identify populations that would benefit from supplementation where risk of outbreeding depression is low. For populations threatened by disease and, in situations where disease eradication is not an option, wildlife managers should consider genetic management to buffer the host species against inbreeding and loss of genetic diversity. Full article

(This article belongs to the Special Issue Conservation Genetics for Management of Threatened Plant and Animal Species)

32 pages, 8370 KiB

Open AccessEditor’s ChoiceReview

The Terebelliformia-Recent Developments and Future Directions

by Pat Hutchings, Orlemir Carrerette, João M. M. Nogueira, Stephane Hourdez and Nicolas Lavesque

Diversity 2021, 13(2), 60; https://doi.org/10.3390/d13020060 - 3 Feb 2021

Cited by 13 | Viewed by 6106

Abstract

Terebelliformia comprises a large group of sedentary polychaetes which live from the intertidal to the deep sea. The majority live in tubes and are selective deposit feeders. This study synthesises the current knowledge of this group, including their distribution, in the different biogeographic [...] Read more.

Terebelliformia comprises a large group of sedentary polychaetes which live from the intertidal to the deep sea. The majority live in tubes and are selective deposit feeders. This study synthesises the current knowledge of this group, including their distribution, in the different biogeographic regions. We highlight the new methodologies being used to describe them and the resolution of species complexes occurring in the group. The main aim of this review is to highlight the knowledge gaps and to stimulate research in those directions, which will allow for knowledge of their distribution and abundances to be used by ecologists and managers. Full article

(This article belongs to the Special Issue Systematics and Diversity of Annelids)

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