Topical Collection "Feature Papers in Phylogeny and Evolution"

A topical collection in Diversity (ISSN 1424-2818). This collection belongs to the section "Phylogeny and Evolution".

Editor

Dr. Eric Buffetaut
E-Mail Website
Collection Editor
Centre National de la Recherche Scientifique, UM8 8538, Laboratoire de Géologie de l'Ecole Normale Supérieure, Paris Sciences et Lettres Research University, CEDEX 05, 75231 Paris, France
Interests: vertebrate palaeontology
Special Issues, Collections and Topics in MDPI journals

Topical Collection Information

Dear Colleagues,

As Diversity is a generalist journal, we hereby invite authors to submit articles outlining the state of the art of some special features concerning phylogeny and evolution, dealing with all aspects of the evolution and phylogeny of organisms, both living and extinct.  

Specialized or local studies will be evaluated only if discussion leads to/illustrates general questions/conclusions relevant to evolution and phylogeny. Both descriptive studies and more theoretical papers are acceptable.

The following list includes some of the topics covered:

  •     Evolutionary biology;
  •     Phylogenetic reconstruction;
  •     Evolution of ecosystems;
  •     Palaeontology;
  •     Palaeobotany;
  •     Micropalaeontology;
  •     Invertebrate palaeontology;
  •     Vertebrate palaeontology;
  •     Palaeobiology;
  •     Fossil record;
  •     Macroevolution;
  •     Molecular phylogeny;
  •     Ancient DNA;
  •     Evolutionary biogeography;
  •     Palaeobiogeography;
  •     Island biogeography;
  •     Extinctions;
  •     Evolution of behavior;
  •     Evolutionary patterns;
  •     Mechanisms of evolution;
  •     Factors of evolutionary change;
  •     Climate change and evolution.

Submissions must represent a starting point for further research and be equally accessible to non-biologists and to specialists in the field.

Dr. Eric Buffetaut
Collection Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the collection website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Diversity is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2000 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • phylogeny
  • evolution
  • palaeontology
  • DNA
  • molecular phylogeny

Published Papers (2 papers)

2022

Article
Characterization of Two New Apodemus Mitogenomes (Rodentia: Muridae) and Mitochondrial Phylogeny of Muridae
Diversity 2022, 14(12), 1089; https://doi.org/10.3390/d14121089 - 09 Dec 2022
Viewed by 423
Abstract
Apodemus is the most common small rodent species in the Palearctic realm and an ideal species for biogeographical research and understanding environmental changes. Elucidating phylogenetic relationships will help us better understand species adaptation and genetic evolution. Due to its stable structure, maternal inheritance, [...] Read more.
Apodemus is the most common small rodent species in the Palearctic realm and an ideal species for biogeographical research and understanding environmental changes. Elucidating phylogenetic relationships will help us better understand species adaptation and genetic evolution. Due to its stable structure, maternal inheritance, and rapid evolution, the mitogenome has become a hot spot for taxonomic and evolutionary studies. In this research, we determined the mitochondrial genome of Apodemus agrarius ningpoensis and Apodemus draco draco and studied the phylogeny of Muridae using ML and BI trees based on all known complete mitogenomes. The mitochondrial genome of Apodemus agrarius ningpoensis was 16,262 bp, whereas that of Apodemus draco draco was 16,222 bp, and both encoded 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. Analysis of base composition showed a clear A-T preference. All tRNAs except tRNASer and tRNALys formed a typical trilobal structure. All protein-coding genes contained T- and TAA as stop codons. Phylogeny analysis revealed two main branches in the Muridae family. Apodemus agrarius ningpoensis formed sister species with Apodemus chevrieri, whereas Apodemus draco draco with Apodemus latronum. Our findings provide theoretical basis for future studies focusing on the mitogenome evolution of Apodemus. Full article
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Figure 1

Article
Phylogenetic Reconstruction of the Rainforest Lineage Fontainea Heckel (Euphorbiaceae) Based on Chloroplast DNA Sequences and Reduced-Representation SNP Markers
Diversity 2022, 14(9), 725; https://doi.org/10.3390/d14090725 - 01 Sep 2022
Viewed by 1143
Abstract
Fontainea is a plant genus with nine recognised species that occur across the tropical and subtropical rainforests of Australia, Papua New Guinea, New Caledonia, and Vanuatu. One of these species is cultivated commercially as the source of a cancer therapeutic, and several other [...] Read more.
Fontainea is a plant genus with nine recognised species that occur across the tropical and subtropical rainforests of Australia, Papua New Guinea, New Caledonia, and Vanuatu. One of these species is cultivated commercially as the source of a cancer therapeutic, and several other species are under threat of extinction. Despite this, the phylogenetic relationships of the genus have not been explored. Our study assessed the phylogeny of seven Fontainea taxa from the Australian and Pacific Island complex using chloroplast DNA sequence data and reduced-representation genome sequencing. Maximum-likelihood and consensus network trees were used to infer the topology of phylogenetic relationships between species, which highlighted three distinct lineages and a number of sister species. Our results indicated that the geographically disjunct species Fontainea venosa and F. pancheri formed a sister group at the earliest position of divergence for the genus. The data also revealed that the vulnerable Fontainea australis and the critically endangered F. oraria form a sister subclade with evidence of some shared plastid genotypes. Generally, our phylogenetic reconstruction supports the modern taxonomical nomenclature. However, we suggest further accessions across several species may support improved genetic distinctions between the sister groups of Fontainea within the genus. Full article
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Graphical abstract

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