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Genes, Volume 9, Issue 8

August 2018 - 49 articles

Cover Story: One of the highest quality avian genome assemblies ever produced was recently completed for the ‘Alalā (Hawaiian crow)—a charismatic species that was recently brought back from the brink of extinction. By comparison to more outbred species, the ‘Alalā genome is substantially more homozygous, with longer runs of homozygosity. Soon, molecular information will be used for “match making”, with the new assembly being used to help estimate molecular relatedness among potential breeders. View this paper.
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Articles (49)

  • Article
  • Open Access
5 Citations
5,675 Views
12 Pages

20 August 2018

Accurate species identification from ancient DNA samples is a difficult task that would shed light on the evolutionary history of pathogenic microorganisms. The field of palaeomicrobiology has undoubtedly benefited from the advent of untargeted metag...

  • Article
  • Open Access
34 Citations
7,870 Views
20 Pages

Comparative Genomics and Description of Putative Virulence Factors of Melissococcus plutonius, the Causative Agent of European Foulbrood Disease in Honey Bees

  • Marvin Djukic,
  • Silvio Erler,
  • Andreas Leimbach,
  • Daniela Grossar,
  • Jean-Daniel Charrière,
  • Laurent Gauthier,
  • Denise Hartken,
  • Sascha Dietrich,
  • Heiko Nacke and
  • Rolf Daniel
  • + 1 author

20 August 2018

In Europe, approximately 84% of cultivated crop species depend on insect pollinators, mainly bees. Apis mellifera (the Western honey bee) is the most important commercial pollinator worldwide. The Gram-positive bacterium Melissococcus plutonius is th...

  • Article
  • Open Access
25 Citations
7,262 Views
14 Pages

Identification of Novel Candidate Markers of Type 2 Diabetes and Obesity in Russia by Exome Sequencing with a Limited Sample Size

  • Yury A. Barbitoff,
  • Elena A. Serebryakova,
  • Yulia A. Nasykhova,
  • Alexander V. Predeus,
  • Dmitrii E. Polev,
  • Anna R. Shuvalova,
  • Evgenii V. Vasiliev,
  • Stanislav P. Urazov,
  • Andrey M. Sarana and
  • Sergey G. Scherbak
  • + 7 authors

17 August 2018

Type 2 diabetes (T2D) and obesity are common chronic disorders with multifactorial etiology. In our study, we performed an exome sequencing analysis of 110 patients of Russian ethnicity together with a multi-perspective approach based on biologically...

  • Feature Paper
  • Review
  • Open Access
71 Citations
18,163 Views
28 Pages

17 August 2018

DNA replication and repair are essential cellular processes that ensure genome duplication and safeguard the genome from deleterious mutations. Both processes utilize an abundance of enzymatic functions that need to be tightly regulated to ensure dyn...

  • Concept Paper
  • Open Access
14 Citations
5,321 Views
6 Pages

Membrane Surface Features of Blastocystis Subtypes

  • John Anthony Yason and
  • Kevin Shyong Wei Tan

17 August 2018

Blastocystis is a common intestinal protistan parasite with global distribution. Blastocystis is a species complex composed of several isolates with biological and morphological differences. The surface coats of Blastocystis from three different isol...

  • Article
  • Open Access
11 Citations
5,736 Views
12 Pages

Genome-Wide Quantification of the Effect of Gene Overexpression on Escherichia coli Growth

  • Hao Chen,
  • Sumana Venkat,
  • Jessica Wilson,
  • Paige McGuire,
  • Abigail L. Chang,
  • Qinglei Gan and
  • Chenguang Fan

16 August 2018

Recombinant protein production plays an essential role in both biological studies and pharmaceutical production. Escherichia coli is one of the most favorable hosts for this purpose. Although a number of strategies for optimizing protein production h...

  • Article
  • Open Access
29 Citations
6,368 Views
29 Pages

Proteome-Wide Analysis of Trypanosoma cruzi Exponential and Stationary Growth Phases Reveals a Subcellular Compartment-Specific Regulation

  • Carla Cristi Avila,
  • Simon Ngao Mule,
  • Livia Rosa-Fernandes,
  • Rosa Viner,
  • María Julia Barisón,
  • André Guillherme Costa-Martins,
  • Gilberto Santos De Oliveira,
  • Marta Maria Geraldes Teixeira,
  • Claudio Romero Farias Marinho and
  • Ariel Mariano Silber
  • + 1 author

15 August 2018

Trypanosoma cruzi, the etiologic agent of Chagas disease, cycles through different life stages characterized by defined molecular traits associated with the proliferative or differentiation state. In particular, T. cruzi epimastigotes are the replica...

  • Article
  • Open Access
17 Citations
6,460 Views
13 Pages

14 August 2018

The prevalence of the so-called diseases of affluence, such as type 2 diabetes or hypertension, has increased dramatically in the last two generations. Although genome-wide association studies (GWAS) have discovered hundreds of genes involved in dise...

  • Review
  • Open Access
18 Citations
8,452 Views
19 Pages

Protein Import into the Endosymbiotic Organelles of Apicomplexan Parasites

  • Natalia Mallo,
  • Justin Fellows,
  • Carla Johnson and
  • Lilach Sheiner

14 August 2018

The organelles of endosymbiotic origin, plastids, and mitochondria, evolved through the serial acquisition of endosymbionts by a host cell. These events were accompanied by gene transfer from the symbionts to the host, resulting in most of the organe...

  • Review
  • Open Access
15 Citations
4,783 Views
12 Pages

Using the Mutation-Selection Framework to Characterize Selection on Protein Sequences

  • Ashley I. Teufel,
  • Andrew M. Ritchie,
  • Claus O. Wilke and
  • David A. Liberles

13 August 2018

When mutational pressure is weak, the generative process of protein evolution involves explicit probabilities of mutations of different types coupled to their conditional probabilities of fixation dependent on selection. Establishing this mechanistic...

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Genes - ISSN 2073-4425