Skip Content
You are currently on the new version of our website. Access the old version .

29 Results Found

  • Article
  • Open Access
22 Citations
4,836 Views
18 Pages

The automated and accurate classification of the images portraying the Human Epithelial cells of type 2 (HEp-2) represents one of the most important steps in the diagnosis procedure of many autoimmune diseases. The extreme intra-class variations of t...

  • Article
  • Open Access
11 Citations
3,870 Views
18 Pages

A Dynamic Learning Method for the Classification of the HEp-2 Cell Images

  • Caleb Vununu,
  • Suk-Hwan Lee,
  • Oh-Jun Kwon and
  • Ki-Ryong Kwon

The complete analysis of the images representing the human epithelial cells of type 2, commonly referred to as HEp-2 cells, is one of the most important tasks in the diagnosis procedure of various autoimmune diseases. The problem of the automatic cla...

  • Article
  • Open Access
7 Citations
7,666 Views
24 Pages

26 February 2018

Indirect Immuno-Fluorescence (IIF) microscopy imaging of human epithelial (HEp-2) cells is a popular method for diagnosing autoimmune diseases. Considering large data volumes, computer-aided diagnosis (CAD) systems, based on image-based classificatio...

  • Article
  • Open Access
16 Citations
5,507 Views
22 Pages

9 May 2020

Classifying the images that portray the Human Epithelial cells of type 2 (HEp-2) represents one of the most important steps in the diagnosis procedure of autoimmune diseases. Performing this classification manually represents an extremely complicated...

  • Article
  • Open Access
4 Citations
2,797 Views
15 Pages

Classification of HEp-2 Staining Pattern Images Using Adapted Multilayer Perceptron Neural Network-Based Intra-Class Variation of Cell Shape

  • Khamael Al-Dulaimi,
  • Jasmine Banks,
  • Aiman Al-Sabaawi,
  • Kien Nguyen,
  • Vinod Chandran and
  • Inmaculada Tomeo-Reyes

15 February 2023

There exists a growing interest from the clinical practice research communities in the development of methods to automate HEp-2 stained cells classification procedure from histopathological images. Challenges faced by these methods include variations...

  • Article
  • Open Access
11 Citations
3,424 Views
23 Pages

20 February 2021

In computer-aided diagnosis (CAD) systems, the automatic classification of the different types of the human epithelial type 2 (HEp-2) cells represents one of the critical steps in the diagnosis procedure of autoimmune diseases. Most of the methods pr...

  • Article
  • Open Access
35 Citations
11,219 Views
18 Pages

SIFT-CNN: When Convolutional Neural Networks Meet Dense SIFT Descriptors for Image and Sequence Classification

  • Dimitrios Tsourounis,
  • Dimitris Kastaniotis,
  • Christos Theoharatos,
  • Andreas Kazantzidis and
  • George Economou

21 September 2022

Despite the success of hand-crafted features in computer visioning for many years, nowadays, this has been replaced by end-to-end learnable features that are extracted from deep convolutional neural networks (CNNs). Whilst CNNs can learn robust featu...

  • Article
  • Open Access
24 Citations
3,678 Views
12 Pages

Deep CNN for IIF Images Classification in Autoimmune Diagnostics

  • Donato Cascio,
  • Vincenzo Taormina and
  • Giuseppe Raso

18 April 2019

The diagnosis and monitoring of autoimmune diseases are very important problem in medicine. The most used test for this purpose is the antinuclear antibody (ANA) test. An indirect immunofluorescence (IIF) test performed by Human Epithelial type 2 (HE...

  • Article
  • Open Access
1,046 Views
18 Pages

Microscopic cell classification is a fundamental challenge in both clinical diagnosis and biological research. However, existing methods still struggle with the complexity and morphological diversity of cellular images, leading to limited accuracy or...

  • Feature Paper
  • Article
  • Open Access
19 Citations
4,528 Views
21 Pages

16 January 2019

The antinuclear antibody (ANA) test is widely used for screening, diagnosing, and monitoring of autoimmune diseases. The most common methods to determine ANA are indirect immunofluorescence (IIF), performed by human epithelial type 2 (HEp-2) cells, a...

  • Article
  • Open Access
1,029 Views
11 Pages

Antitumor Potential of Bioactive Crude Extracts Derived from Actinomycetes

  • Hassan K. Dhaini,
  • Bahaa Fahed Hassanieh,
  • Rana El Hajj and
  • Mahmoud I. Khalil

1 October 2025

Marine actinomycetes constitute a vigorous source of bioactive compounds with potential anti-tumor activity. This study investigates the antitumor activity and classification of actinomycetes isolated from 32 marine soil samples collected across four...

  • Article
  • Open Access
32 Citations
3,934 Views
18 Pages

Aged Pericarpium Citri Reticulatae ‘Chachi’ Attenuates Oxidative Damage Induced by tert-Butyl Hydroperoxide (t-BHP) in HepG2 Cells

  • Qian Yu,
  • Yexing Tao,
  • Yuting Huang,
  • Daniel Zogona,
  • Ting Wu,
  • Ruiting Liu,
  • Siyi Pan and
  • Xiaoyun Xu

20 January 2022

This study investigated the protective effects of aged Pericarpium Citri Reticulatae ‘Chachi’ (PCR-C) on tert-butyl hydroperoxide (t-BHP)-induced oxidative damage in HepG2 cells. According to HPLC analysis, PCR-C aged 10 years (PCR-C10) h...

  • Technical Note
  • Open Access
26 Citations
3,053 Views
20 Pages

Performance of Fine-Tuning Convolutional Neural Networks for HEp-2 Image Classification

  • Vincenzo Taormina,
  • Donato Cascio,
  • Leonardo Abbene and
  • Giuseppe Raso

3 October 2020

The search for anti-nucleus antibodies (ANA) represents a fundamental step in the diagnosis of autoimmune diseases. The test considered the gold standard for ANA research is indirect immunofluorescence (IIF). The best substrate for ANA detection is p...

  • Article
  • Open Access
6 Citations
5,127 Views
9 Pages

Absolute Copy Numbers of β-Actin Proteins Collected from 10,000 Single Cells

  • Beiyuan Fan,
  • Xiufeng Li,
  • Lixing Liu,
  • Deyong Chen,
  • Shanshan Cao,
  • Dong Men,
  • Junbo Wang and
  • Jian Chen

Semi-quantitative studies have located varied expressions of β-actin proteins at the population level, questioning their roles as internal controls in western blots, while the absolute copy numbers of β-actins at the single-cell level are m...

  • Communication
  • Open Access
2 Citations
2,994 Views
8 Pages

Evaluation of the Effect of Perfluorohexane Sulfonate on the Proliferation of Human Liver Cells

  • Kyeong Hwa Sim,
  • Hyeon Seo Oh,
  • Chuhee Lee,
  • Heesoo Eun and
  • Youn Ju Lee

Perfluorohexane sulfonate (PFHxS) is a widely detected replacement for legacy long-chain perfluoroalkyl substances (PFAS) in the environment and human blood samples. Its potential toxicity led to its recent classification as a globally regulated pers...

  • Article
  • Open Access
24 Citations
4,175 Views
9 Pages

CD117 Is a Specific Marker of Intraductal Papillary Mucinous Neoplasms (IPMN) of the Pancreas, Oncocytic Subtype

  • Paola Mattiolo,
  • Seung-Mo Hong,
  • Gaetano Paolino,
  • Borislav C. Rusev,
  • Giovanni Marchegiani,
  • Roberto Salvia,
  • Stefano Andrianello,
  • Paola Capelli,
  • Paola Piccoli and
  • Claudio Luchini
  • + 3 authors

12 August 2020

The intraductal oncocytic papillary neoplasm (IOPN) of the pancreas has been recognized by WHO classification as a unique intraductal papillary mucinous neoplasm (IPMN) category. IOPN is composed of oxyphil cells, usually expressing MUC5AC, MUC6, and...

  • Article
  • Open Access
4 Citations
2,113 Views
17 Pages

22 January 2025

Tiger nuts were enzymatically hydrolyzed by Alcalase and then separated and purified by ultrafiltration classification and Sephadex G-15 fractionation to obtain tiger nut peptides. Their chemical antioxidant activities and cytoprotective functions on...

  • Feature Paper
  • Article
  • Open Access
18 Citations
3,442 Views
16 Pages

Chemerin Is Induced in Non-Alcoholic Fatty Liver Disease and Hepatitis B-Related Hepatocellular Carcinoma

  • Elisabeth M. Haberl,
  • Susanne Feder,
  • Rebekka Pohl,
  • Lisa Rein-Fischboeck,
  • Kerstin Dürholz,
  • Laura Eichelberger,
  • Josef Wanninger,
  • Thomas S. Weiss and
  • Christa Buechler

13 October 2020

Chemerin is protective in experimental models of hepatocellular carcinoma (HCC). Noteworthy, chemerin mRNA and protein were reduced in HCC tissues of Asian patients with mostly hepatitis B disease etiology. The current study nevertheless showed that...

  • Article
  • Open Access
28 Citations
5,224 Views
13 Pages

Malignant Rhabdoid Tumor, an Aggressive Tumor Often Misclassified as Small Cell Variant of Hepatoblastoma

  • Ladan Fazlollahi,
  • Susan J. Hsiao,
  • Manpreet Kochhar,
  • Mahesh M. Mansukhani,
  • Darrell J. Yamashiro and
  • Helen E. Remotti

11 December 2019

The clinical management of pediatric liver tumors involves stratification into risk groups. One previously defined, high-risk group of hepatoblastomas is the small cell undifferentiated variant. In light of molecular studies showing SMARCB1 deletion...

  • Article
  • Open Access
8 Citations
3,452 Views
15 Pages

IoMT-Based Automated Diagnosis of Autoimmune Diseases Using MultiStage Classification Scheme for Sustainable Smart Cities

  • Divya Biligere Shivanna,
  • Thompson Stephan,
  • Fadi Al-Turjman,
  • Manjur Kolhar and
  • Sinem Alturjman

26 October 2022

The resolution of complex medical diagnoses using pattern recognition requires an artificial neural network-based expert system to automate autoimmune disease diagnosis in blood samples. This process is done using image-based computer-aided diagnosis...

  • Article
  • Open Access
1 Citations
1,082 Views
9 Pages

Pilot Study of AI-Assisted ANA Immunofluorescence Reading—Comparison with Classical Visual Interpretation

  • Sarah Mayr,
  • Margit Dollinger,
  • Boris Ehrenstein,
  • Florian Günther,
  • Olga Krammer,
  • Antonia Schuster,
  • Thomas Büttner,
  • Rico Hiemann,
  • Peter Schierack and
  • Martin Fleck
  • + 1 author

30 September 2025

Background: Antinuclear antibodies (ANAs) play a crucial role in diagnosing systemic autoimmune rheumatic diseases, particularly systemic lupus erythematosus. The recommended standard for ANA detection is indirect immunofluorescence testing (IIFT) us...

  • Article
  • Open Access
5 Citations
2,158 Views
16 Pages

Long non-coding RNAs (lncRNAs) are emerging as a critical regulator in controlling the expression level of genes involved in cell differentiation and development. Primordial follicle activation (PFA) is the first step for follicle maturation, and exc...

  • Article
  • Open Access
13 Citations
13,193 Views
17 Pages

Application of Supervised Machine Learning to Recognize Competent Level and Mixed Antinuclear Antibody Patterns Based on ICAP International Consensus

  • Yi-Da Wu,
  • Ruey-Kai Sheu,
  • Chih-Wei Chung,
  • Yen-Ching Wu,
  • Chiao-Chi Ou,
  • Chien-Wen Hsiao,
  • Huang-Chen Chang,
  • Ying-Chieh Huang,
  • Yi-Ming Chen and
  • Yi-Hsing Chen
  • + 8 authors

Background: Antinuclear antibody pattern recognition is vital for autoimmune disease diagnosis but labor-intensive for manual interpretation. To develop an automated pattern recognition system, we established machine learning models based on the Inte...

  • Article
  • Open Access
11 Citations
4,379 Views
15 Pages

A Systematic Approach to Assess the Activity and Classification of PCSK9 Variants

  • Kepa B. Uribe,
  • Kevin Chemello,
  • Asier Larrea-Sebal,
  • Asier Benito-Vicente,
  • Unai Galicia-Garcia,
  • Steeve Bourane,
  • Ali K. Jaafar,
  • Gilles Lambert and
  • César Martín

18 December 2021

Background: Gain of function (GOF) mutations of PCSK9 cause autosomal dominant familial hypercholesterolemia as they reduce the abundance of LDL receptor (LDLR) more efficiently than wild-type PCSK9. In contrast, PCSK9 loss of function (LOF) variants...

  • Article
  • Open Access
5 Citations
1,583 Views
28 Pages

Natural products are generally considered safe for human consumption, but this classification is often based on ethnobotanical surveys or their use in traditional medicine over a long period of time. However, edaphoclimatic factors are known to produ...

  • Brief Report
  • Open Access
10 Citations
4,059 Views
10 Pages

Quantification of Antifibrillarin (anti-U3 RNP) Antibodies: A New Insight for Patients with Systemic Sclerosis

  • Audrey Benyamine,
  • Daniel Bertin,
  • Noémie Resseguier,
  • Xavier Heim,
  • Julien Bermudez,
  • David Launay,
  • Sylvain Dubucquoi,
  • Adrian Hij,
  • Dominique Farge and
  • Brigitte Granel
  • + 8 authors

Background: The detection of additional autoantibodies is of great concern in systemic sclerosis (SSc) when those included in the ACR/EULAR classification are negative. In this context, the interest of antifibrillarin (anti-U3RNP) autoantibodies (AFA...

  • Article
  • Open Access
11 Citations
7,391 Views
16 Pages

Untargeted Metabolomics in Forensic Toxicology: A New Approach for the Detection of Fentanyl Intake in Urine Samples

  • Eleonora Amante,
  • Eugenio Alladio,
  • Rebecca Rizzo,
  • Daniele Di Corcia,
  • Pierre Negri,
  • Lia Visintin,
  • Michela Guglielmotto,
  • Elena Tamagno,
  • Marco Vincenti and
  • Alberto Salomone

18 August 2021

The misuse of fentanyl, and novel synthetic opioids (NSO) in general, has become a public health emergency, especially in the United States. The detection of NSO is often challenged by the limited diagnostic time frame allowed by urine sampling and t...

  • Review
  • Open Access
3 Citations
9,001 Views
25 Pages

The Art of Interpreting Antinuclear Antibodies (ANAs) in Everyday Practice

  • Marcelina Kądziela,
  • Aleksandra Fijałkowska,
  • Marzena Kraska-Gacka and
  • Anna Woźniacka

28 July 2025

Background: Antinuclear antibodies (ANAs) serve as crucial biomarkers for diagnosing systemic autoimmune diseases; however, their interpretation can be complex and may not always correlate with clinical symptoms. Methods: A comprehensive narrative re...

  • Article
  • Open Access
9 Citations
4,625 Views
11 Pages

Capillaroscopy and Immunological Profile in Systemic Sclerosis

  • Sevdalina Nikolova Lambova,
  • Ekaterina Krasimirova Kurteva,
  • Sanie Syuleymanova Dzhambazova,
  • Georgi Hristov Vasilev,
  • Dobroslav Stanimirov Kyurkchiev and
  • Mariela Gencheva Geneva-Popova

29 March 2022

Introduction: Data on the associations between capillaroscopic changes and diagnostic systemic-sclerosis (SSc)-related antibodies are scarce. Presence of such correlation would improve current knowledge about the disease’s pathogenesis by revea...