Journal Description
Nitrogen
Nitrogen
is an international, peer-reviewed, open access journal on the whole field of nitrogen research published quarterly online by MDPI.
- Open Access—free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within ESCI (Web of Science), Scopus, CAPlus / SciFinder, and other databases.
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 18.1 days after submission; acceptance to publication is undertaken in 3.6 days (median values for papers published in this journal in the first half of 2026).
- Journal Rank: CiteScore - Q2 (Agricultural and Biological Sciences (miscellaneous))
- Recognition of Reviewers: APC discount vouchers, optional signed peer-review and reviewer names published annually in the journal.
- Journal Cluster of Environmental Science: Sustainability, Land, Clean Technologies, Environments, Nitrogen, Recycling, Urban Science, Safety, Air, Waste, Aerobiology and Toxics.
Impact Factor:
2.8 (2025);
5-Year Impact Factor:
2.6 (2025)
Latest Articles
The Role of Nitric Oxide in Microbial Physiology and Host–Microbe Interactions: Integrating Biosensing Technologies, Analytical Methods, Statistical Frameworks, and AI-Driven Applications
Nitrogen 2026, 7(3), 72; https://doi.org/10.3390/nitrogen7030072 - 10 Jul 2026
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Nitric oxide (NO) is a small, highly reactive gaseous signaling molecule that plays diverse and context-dependent roles in microbial physiology and host–microbe interactions. Over the past decade, increasing evidence has revealed the dual nature of NO as both an antimicrobial effector and a
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Nitric oxide (NO) is a small, highly reactive gaseous signaling molecule that plays diverse and context-dependent roles in microbial physiology and host–microbe interactions. Over the past decade, increasing evidence has revealed the dual nature of NO as both an antimicrobial effector and a signaling mediator involved in microbial stress responses, metabolism, biofilm dynamics, quorum sensing, virulence regulation, and symbiotic interactions. In microbial systems, NO influences adaptation to environmental stress and contributes to mechanisms associated with persistence and antimicrobial resistance. In host organisms, NO functions as a key component of innate immunity while also participating in beneficial interactions involving rhizobia, mycorrhizal fungi, and probiotic microorganisms. Despite its biological significance, accurate detection and quantification of NO remain challenging because of its transient nature, high reactivity, low physiological concentrations, and interference from related reactive oxygen and nitrogen species. Recent advances in biosensing technologies have substantially improved NO detection capabilities through the development of electrochemical, optical, enzyme-based, microfluidic, wearable, and implantable sensing platforms. These innovations are complemented by analytical techniques including electron paramagnetic resonance spectroscopy, mass spectrometry, fluorescence-based imaging, and advanced microscopy, which enhance sensitivity, specificity, and spatiotemporal resolution in complex biological environments. Concurrently, statistical and computational approaches—including sensor calibration models, multivariate analyses, machine learning algorithms, and bioinformatics pipelines—have become increasingly important for extracting biologically meaningful information from NO-related datasets. Unlike previous reviews that primarily focus on either NO biology or sensing technologies, this review integrates current knowledge of NO-mediated microbial physiology and host–microbe interactions with recent developments in biosensor engineering, analytical methodologies, statistical frameworks, and emerging artificial intelligence (AI)-driven data interpretation. We further highlight applications of NO detection in infectious disease diagnostics, antimicrobial screening, probiotic and biofertilizer evaluation, environmental microbiome monitoring, and real-time studies of symbiosis and infection. Finally, future directions including miniaturized sensing platforms, multi-omics integration, AI-assisted analytics, and sensor standardization are discussed. By unifying molecular, analytical, and computational perspectives, this review provides a multidisciplinary framework and roadmap for advancing NO-based research and translational applications across microbial, environmental, and host-associated systems.
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Open AccessArticle
A Novel Nitrogen-Fixing Subspecies of Rhizobium laguerreae Enhances Symbiotic Performance in Pisum sativum
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Houda Ilahi, Houda Zouagui, Seif Allah Chihaoui, Muhammad Sulman, Nada Jihnaoui, Mustapha Missbah El Idrissi, Mohamed Najib Alfeddy, Lahcen Ouahmane, Hassen Gherbi, James T. Tambong, Walid Ellouze and Bacem Mnasri
Nitrogen 2026, 7(3), 71; https://doi.org/10.3390/nitrogen7030071 - 7 Jul 2026
Abstract
This study investigates nitrogen-fixing rhizobia associated with Pisum sativum, a member of the tribe Vicieae (Fabaceae), whose species establish symbioses with bacteria belonging predominantly to the symbiovar viciae within the Rhizobium leguminosarum complex (Rlc). Based on a comprehensive taxonomic revision of the
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This study investigates nitrogen-fixing rhizobia associated with Pisum sativum, a member of the tribe Vicieae (Fabaceae), whose species establish symbioses with bacteria belonging predominantly to the symbiovar viciae within the Rhizobium leguminosarum complex (Rlc). Based on a comprehensive taxonomic revision of the F-clade within this complex, we report the identification and characterization of a novel rhizobial subspecies, Rhizobium laguerreae subsp. mediterraneum subsp. nov., isolated from pea nodules in Tunisia. Phylogenetic analyses based on 16S rRNA and multilocus sequence analysis (recA, atpD, dnaK, and glnII) placed strains 25PS6 and 10PS4 within the Rlc, while whole-genome phylogenomics using 2960 single-copy orthologues supported their assignment to a distinct monophyletic clade (Q-II). Subspecies-level clustering consistency was maximized using an optimized ANIm criterion of 97.40%, corresponding to 76.65% dDDH. Both strains belong to symbiovar viciae and exhibited improved symbiotic performance on pea plants compared to the reference strain, indicating strong symbiotic performance and potential relevance for biological nitrogen fixation. Cluster-specific SNP analysis identified 63 exclusive non-synonymous mutations with putative functional effects predicted in silico. These results suggest that cluster-specific nsSNPs may contribute to genomic differentiation within the Q-II lineage. Phenotypic and chemotaxonomic analyses further distinguished the novel subspecies based on carbon utilization, enzymatic activity, antibiotic resistance, and fatty acid profiles. Together, these findings highlight the genomic diversity within nitrogen-fixing rhizobia associated with legumes and identify a novel subspecies with potential agronomic relevance for improving symbiotic nitrogen fixation in pea cultivation. The proposed subspecies, Rhizobium laguerreae subsp. mediterraneum, is represented by strains 10PS4 and 25PS6, with strain 25PS6T (=DSM 116212T = LMG 33205T) designated as the type strain.
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(This article belongs to the Special Issue Genomics and Molecular Ecology of Microbial Nitrogen Fixation and Ecosystem Nitrogen Cycling)
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The Lag Effect of National Nitrogen Management on Nitrogen Use Efficiency and Greenhouse Gas Emission
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Wangzheng Shen, Qianrui Jing, Sisi Li, Yanhua Zhuang, He Duan, Junchong Wei, Jing He, Yun Du and Liang Zhang
Nitrogen 2026, 7(3), 70; https://doi.org/10.3390/nitrogen7030070 - 2 Jul 2026
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Effective nitrogen (N) management is essential for ensuring food security, promoting agricultural sustainability, and addressing climate change due to the rise in fertilizer use since the 20th century. However, environmental improvements from N management are subject to uncertainties and time lags. In this
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Effective nitrogen (N) management is essential for ensuring food security, promoting agricultural sustainability, and addressing climate change due to the rise in fertilizer use since the 20th century. However, environmental improvements from N management are subject to uncertainties and time lags. In this study, we analyzed data from 113 countries, focusing on N use efficiency and greenhouse gas emissions as key indicators. Our results illuminated a notable lag effect between improvements in these two indicators at the global scale, posing formidable challenges in achieving timely environmental benefits through N management strategies. We categorized countries into four groups based on agricultural sustainability, offering insights into the environmental impacts of various N management practices. Nations prioritize N management differently, reflecting the intricate interplay between socio-economic determinants and environmental considerations. Adopting integrated N management practices, which balance agricultural productivity and environmental conservation, represents an indispensable imperative for the advancement of sustainable agriculture.
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Open AccessReview
Nitrogen Dynamics in Tropical Pastures: Relating Soil–Plant–Animal Interactions to Improve Productivity and Reduce Greenhouse Gas Emissions
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Hitalo Rodrigues da Silva, Gelson dos Santos Difante, Francisca Fernanda da Silva Roberto, Vanessa Zirondi Longhini, Jéssica Gomes Rodrigues, Marislayne de Gusmão Pereira, Carolina Marques Costa Araújo, Marcos Antonio Ferreira-Júnior, Denise Baptaglin Montagner, Gabriela Oliveira de Aquino Monteiro and Vicente Batista de Souza-Junior
Nitrogen 2026, 7(3), 69; https://doi.org/10.3390/nitrogen7030069 - 29 Jun 2026
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Nitrogen fertilization plays a central role in the intensification and sustainability of tropical pasture systems by influencing forage production, animal performance, and greenhouse gas (GHG) emissions. Although the individual components of these systems have been extensively studied, studies that simultaneously integrate soil nitrogen
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Nitrogen fertilization plays a central role in the intensification and sustainability of tropical pasture systems by influencing forage production, animal performance, and greenhouse gas (GHG) emissions. Although the individual components of these systems have been extensively studied, studies that simultaneously integrate soil nitrogen processes, forage responses, animal performance, and environmental outcomes within a unified framework remain scarce in the literature. This structured narrative review aimed to synthesize current knowledge on the role of nitrogen in tropical pastures, addressing soil–plant–animal–environment interactions with a focus on nitrogen use efficiency, productivity, and GHG emissions. Studies were selected from Google Scholar using keywords related to nitrogen fertilization, tropical forages, GHG emissions, and animal performance, prioritizing research conducted with C4 forage species. The reviewed evidence demonstrates that nitrogen fertilization consistently increases forage accumulation, tillering, crude protein concentration, stocking rate, and animal productivity per unit area; however, nitrogen recovery efficiency decreases at high application rates. The timing of nitrogen application, dose splitting, and the choice of nitrogen source are key management strategies to reduce N losses through volatilization, leaching, and gaseous emissions, improving nitrogen use efficiency in tropical pasture systems. Future studies should focus on providing integrated answers that simultaneously consider soil, plant, animal, and environmental components, in order to support more efficient and sustainable nitrogen management in tropical livestock systems.
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Open AccessSystematic Review
UAV-Based Nitrogen Assessment in Wheat: A Systematic Review of Target Traits, Validation Rigor, Growth Stage Evidence, and Machine Learning Approaches
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Muhammad Waqar Nasir, Muhammad Yousaf Nadeem, Mawra Ishaq, Rabia Manzoor, Muhammad Haseeb Javaid, Muhammad Daniyal Junaid and Changwei Tan
Nitrogen 2026, 7(3), 68; https://doi.org/10.3390/nitrogen7030068 - 26 Jun 2026
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Excess or deficiency of nitrogen affects wheat yield significantly. Several destructive and non-destructive methods are used for nitrogen diagnosis to support precision fertilizer management in wheat. Recently, UAV-based remote sensing combined with machine learning has emerged as a promising approach for wheat nitrogen
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Excess or deficiency of nitrogen affects wheat yield significantly. Several destructive and non-destructive methods are used for nitrogen diagnosis to support precision fertilizer management in wheat. Recently, UAV-based remote sensing combined with machine learning has emerged as a promising approach for wheat nitrogen assessment. A systematic review was conducted to identify strengths and gaps in the methodologically diverse literature. The PRISMA approach was used to identify relevant literature from Scopus and Web of Science databases. The extracted data were used for comparative quantitative analysis to evaluate whether studies targeted direct nitrogen variables or proxy traits, how validation rigor influenced reported performance, and which growth stages were most commonly associated with nitrogen diagnosis. Across studies with comparable reported performance, direct nitrogen studies showed a median selected R2 of 0.855, while close-proxy and indirect-proxy studies showed median selected R2 values of 0.868 and 0.841, respectively. Validation design also differed markedly across the literature. Most studies relied on internal-only validation, and these studies showed a higher median selected R2 (0.860) than studies using independent-like validation (0.825), suggesting that reported performance may often be optimistic under less rigorous validation frameworks. Growth-stage analysis showed that nitrogen diagnosis was most commonly investigated from jointing to grain filling with most studies focusing on multiple growth stages rather than on a single stage. This indicates the use of a broader diagnostic window rather than identifying single stages of practical importance. In conclusion, the reviewed literature represents a mixture of direct nitrogen and proxy or indirect studies with stronger within-study predictive capacity than in providing robust and transferable performance for practical nitrogen management. Future research should focus on direct nitrogen diagnosis and adopt independent validation designs to link diagnosis outputs to actionable precision nutrient management.
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Open AccessArticle
Halotolerant Nitrogen-Fixing Mesorhizobium ciceri Modulates Antioxidant Homeostasis and Growth Performance in Chickpea Cultivars Under Salt Stress
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Imen Hemissi, Hasna Ellouzi, Amira Hachana, Walid Zorrig, Souhir Amraoui, Hanen Arfaoui, Mohsen Hnana and Mohamed Annabi
Nitrogen 2026, 7(3), 67; https://doi.org/10.3390/nitrogen7030067 - 23 Jun 2026
Abstract
Soil salinity inhibits biological nitrogen fixation (BNF) in legumes, compromising nitrogen nutrition and crop productivity. This study evaluated whether two halotolerant Mesorhizobium ciceri strains (S1, S2) can sustain BNF and alleviate moderate salt stress (100 mM NaCl) in three Tunisian chickpea (Cicer
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Soil salinity inhibits biological nitrogen fixation (BNF) in legumes, compromising nitrogen nutrition and crop productivity. This study evaluated whether two halotolerant Mesorhizobium ciceri strains (S1, S2) can sustain BNF and alleviate moderate salt stress (100 mM NaCl) in three Tunisian chickpea (Cicer arietinum L.) cultivars (Amdoun, Béja 1, and Nour). Inoculated and non-inoculated plants were grown under controlled conditions. Salinity reduced shoot dry weight by 37.5–42% and severely impaired nodulation (≈60% reduction) in non-inoculated plants. Bacterial inoculation significantly increased germination rate, shoot and root biomass, and nodule number compared to non-inoculated salt-stressed controls. Improved nodulation corresponded to better nitrogen nutrition, reflected by higher leaf chlorophyll content (a proxy for nitrogen status). However, direct measurements of nitrogenase activity (e.g., acetylene reduction assay) are needed to confirm enhanced BNF. Inoculated seedlings also exhibited lower oxidative stress markers (hydrogen peroxide and malondialdehyde) and enhanced antioxidant enzyme activities (superoxide dismutase and glutathione peroxidase), indicating reduced reactive oxygen species damage. Cultivar-specific responses were observed: Amdoun responded best to S1, Béja 1 to S2 for biomass recovery, while Nour showed strong antioxidant induction but limited growth gain. We conclude that halotolerant M. ciceri strains improve chickpea performance under salt stress primarily by sustaining BNF and nodulation, thereby maintaining nitrogen nutrition. Strain–cultivar compatibility is critical for optimizing this bio-inoculant strategy in saline agroecosystems. Our findings identify the combination of cultivar Béja 1 with strain S2 as the most promising for biomass recovery under moderate salinity, providing a practical, strain–cultivar matching framework that can guide the development of effective bio-inoculants for chickpea production in salt-affected areas of Tunisia and similar Mediterranean regions.
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(This article belongs to the Special Issue Nitrogen: Advances in Plant Stress Research)
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Influence of Green Manures and Fertilization on Maize (Zea mays L.) Yield and Quality
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Ana-Maria Vălean, Nicolae Tritean, Laura Șopterean, Adina Tărău, Alina Șimon, Ioana Crișan, Florin Russu, Loredana Suciu and Daniela Trifan
Nitrogen 2026, 7(2), 66; https://doi.org/10.3390/nitrogen7020066 - 16 Jun 2026
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Maize is one of the most important agricultural crops worldwide, due to its high production potential and the multiple uses of its products. In the context of the need to maintain high yields and preserve soil fertility, the use of green manures together
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Maize is one of the most important agricultural crops worldwide, due to its high production potential and the multiple uses of its products. In the context of the need to maintain high yields and preserve soil fertility, the use of green manures together with mineral fertilizers can represent a sustainable solution. For this purpose, during the period 2024–2025, at the Turda Agricultural Research and Development Station (Cluj, Romania), a field experiment was carried out to evaluate the effect of two cover crops used as green manures, white lupin (Lupinus albus) and phacelia (Phacelia sp.), on the Turda 344 maize hybrid. Within each agrofund (classical, after lupin, and after phacelia), five fertilization variants were tested, consisting of basic fertilization and the supplementary application of mineral fertilizers and biostimulants. The results highlighted the major influence of climatic conditions on yield and grain quality, with the experimental year having a significant effect on the main parameters analyzed. In 2024, under basic fertilization, lupin and phacelia increased grain yield by 8.0% and 1.4%, respectively, compared with the classic agrofund, while in 2025, phacelia maintained a yield advantage of 1.4%. The highest yields were obtained in 2025, when climatic conditions were more favorable, and additional fertilization with ammonium nitrate determined the highest values, reaching 9748 kg/ha in the phacelia agrofund (+6.3% compared with the basic fertilization), 9544 kg/ha in the lupine agrofund (+7.2%), and 9612 kg/ha in the classical agrofund (+6.3%). Additional nitrogen application also led to the highest values of thousand kernel weight, highlighting the essential role of nitrogen in the grain filling process. Grain quality analysis showed that variations in starch and protein content had an inverse evolution between the two experimental years, suggesting the influence of climatic conditions and nitrogen availability on grain composition.
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Impact of Split-Application Nitrogen Strategies on Maize (Zea mays L.) Yield and Soil Fertility Indices Across Contrastive Soil Types in the Transylvanian Plateau
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Vlăduț-Ionuț Șter, Vasile-Adrian Horga, Edward Muntean, Alexandru D. Costin, Dan-Laurențiu Suciu, Beniamin-Emanuel Andraș, Marcel M. Duda and Laura Paulette
Nitrogen 2026, 7(2), 65; https://doi.org/10.3390/nitrogen7020065 - 15 Jun 2026
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Optimization of nitrogen (N) management is critical for enhancing maize (Zea mays L.) productivity while maintaining soil health. The present study investigated the impact of split-application fertilization strategies on soil chemical properties and grain yield across three distinct soil types (calcaric fluvisol,
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Optimization of nitrogen (N) management is critical for enhancing maize (Zea mays L.) productivity while maintaining soil health. The present study investigated the impact of split-application fertilization strategies on soil chemical properties and grain yield across three distinct soil types (calcaric fluvisol, luvic phaeozem, and stagnic phaeozem) in Mureș County, Romania, over three cropping seasons (2022–2024). Three fertilization variants were evaluated: the first treatment, designated V1, involved the application of 300 kg/ha NPK 20-20-0 + 300 kg/ha urea, the second treatment V2 utilized 300 kg/ha NPK 20-20-0 + 300 kg/ha NAC 27 N-calcium ammonium nitrate, and the third treatment V3 served as the baseline control, receiving (300 kg/ha NPK 20-20-0). Results indicated that significant differences were observed among the three experimental sites representing contrasting soil types for soil chemical properties and maize productivity. Calcaric fluvisol exhibited the highest production potential, attaining a mean yield of 11,702.78 kg/ha. The impact of N supplementation on soil N levels and maize yield was found to be significant. The variant receiving urea supplementation (V1) achieved the highest median yield of 9560 kg/ha in comparison to the 7420 kg/ha obtained in the control. A strong positive correlation was observed between N index and yield across all soil types (ρ = 0.93 to 0.97, p < 0.001). Fertilization significantly influenced soil pH, CaCO3 content, nitrogen index, phosphorus availability, and maize yield, whereas humus content remained relatively stable among treatments. These findings indicate that a split-fertilization regime combining NPK with urea provides a favorable balance between productivity and cost-effectiveness and maize output in the Transylvanian Plateau.
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Open AccessArticle
Nitrogen Uptake and Leaching in Relation to Root Distribution in Wheat and Spelt Under Acidic Subsoil Conditions
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Ryosuke Tajima, Takae Suzuki, Tomohiro Watanabe, Hisashi Nasukawa, Kazumitsu Onishi and Mizuhiko Nishida
Nitrogen 2026, 7(2), 64; https://doi.org/10.3390/nitrogen7020064 - 15 Jun 2026
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Acidic subsoils can restrict root growth and nitrogen (N) uptake and increase the risk of N loss; however, the extent of genotypic variation remains unclear. We evaluated two bread wheat cultivars, Haruyokoi and Harukirari, and one spelt line, KU-1025, under limed and acidic
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Acidic subsoils can restrict root growth and nitrogen (N) uptake and increase the risk of N loss; however, the extent of genotypic variation remains unclear. We evaluated two bread wheat cultivars, Haruyokoi and Harukirari, and one spelt line, KU-1025, under limed and acidic subsoil treatments to clarify whether maintaining root growth in acidic subsoil contributes to greater N capture and lower N loss. After 78 days, we measured shoot dry weight, shoot N uptake, root dry weight, total root length, soil nitrate (NO3-N) concentration, and cumulative N leaching. The acidic subsoil reduced shoot N uptake, root length in the subsoil, deep-root ratio, and NO3-N depletion, indicating that it restricted root proliferation and N acquisition. KU-1025 showed the greatest shoot dry weight, shoot N uptake, root dry weight, and total root length under both treatments. It also maintained a high deep-root ratio under acidic subsoil conditions and showed lower soil NO3-N concentrations and less N leaching than the two wheat cultivars. Across genotypes and treatments, shoot N uptake was positively correlated with root dry weight and total root length, whereas N leaching was negatively correlated with these traits. These results suggest that maintaining a large root system, rather than deep rooting alone, is important for improving N capture and reducing N loss under acidic subsoil conditions, and that KU-1025 may provide useful genetic variation for breeding wheat adapted to acidic subsoil environments.
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Open AccessArticle
CO2 Emissions from Urea Fertilizer in Pakistan, China, India, and the USA: A Comparative Analysis Using the IPCC Model
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Amanullah
Nitrogen 2026, 7(2), 63; https://doi.org/10.3390/nitrogen7020063 - 8 Jun 2026
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The application of urea in agricultural practices leads to carbon dioxide (CO2) emissions through hydrolysis. Urea, when applied to soil, reacts with water and undergoes hydrolysis, releasing ammonia (NH3) and CO2. This reaction is facilitated by soil
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The application of urea in agricultural practices leads to carbon dioxide (CO2) emissions through hydrolysis. Urea, when applied to soil, reacts with water and undergoes hydrolysis, releasing ammonia (NH3) and CO2. This reaction is facilitated by soil enzymes such as urease. The released NH3 can further undergo nitrification, producing nitrate (NO3−) and nitrous oxide (N2O). While CO2 from urea hydrolysis is relatively small compared to other sources, cumulative emissions from agricultural activities contribute significantly to climate change and agriculture’s carbon footprint. A straightforward calculation model (CO2 = A × 0.73) was employed to approximate CO2 emissions in various countries based on annual urea usage. In this model, China led emissions with 40,483 Gg yr−1, followed by India (26,031 Gg yr−1) and the USA (12,032 Gg yr−1). Out of total annual emissions (94,763 Gg), China contributed 43%, India 27%, the USA 13%, the EU 8%, Pakistan 5%, and Indonesia 4%. China’s CO2 emissions from urea were 16% higher than India, 30% higher than the USA, 35% higher than the EU, 38% higher than Pakistan, and 39% higher than Indonesia. As expected from the deterministic IPCC formula (CO2 = Urea × 0.73), the relationship between urea consumption and CO2 emissions is linear with a slope of 0.73. Linear regression shows that for every 1000-ton increase in urea consumption, CO2 emissions increase by 730 tons (0.73 Gg) (R2 = 0.99, p < 0.001). Pakistan’s urea consumption grew at an average annual rate of 2.2% from 2015 to 2023, with corresponding CO2 emissions increasing from 4015 to 4788 Gg yr−1 (total increase of 20% over eight years). Optimizing fertilizer application rates, timing, and methods to enhance nutrient uptake efficiency, along with sustainable agricultural practices (organic matter management, conservation tillage, and precision agriculture), can help mitigate environmental impacts. This study emphasizes implementing sustainable agricultural practices and integrated nutrient management to minimize CO2 emissions from urea application, enabling agricultural systems to contribute to climate change mitigation and reduced carbon footprints.
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(This article belongs to the Special Issue Optimizing Water and Nitrogen Management for Sustainable Crop Production and Greenhouse Gas Mitigation)
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Open AccessArticle
Nitrogen Transformations, Phosphorus Dynamics, and Humification During Microbially Enhanced Poultry Manure Storage
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Jerzy Mirosław Kupiec
Nitrogen 2026, 7(2), 62; https://doi.org/10.3390/nitrogen7020062 - 3 Jun 2026
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Livestock manure management remains a significant environmental challenge due to nutrient losses that may contribute to soil and water contamination. This study investigated nitrogen and phosphorus transformations, as well as organic matter stabilisation, in poultry manure subjected to microbial inoculation under controlled laboratory
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Livestock manure management remains a significant environmental challenge due to nutrient losses that may contribute to soil and water contamination. This study investigated nitrogen and phosphorus transformations, as well as organic matter stabilisation, in poultry manure subjected to microbial inoculation under controlled laboratory conditions (EI) and long-term field storage (EII). In the laboratory experiment, chicken and turkey manure were treated with denitrifying bacteria, conditioning bacteria, or their combination. The results indicate treatment-dependent differences in ammonium accumulation and nitrate formation in leachates, with the combined microbial inoculum suggesting reduced nutrient mobility compared with the untreated controls. In the field experiment, temporal changes in nitrogen fractions revealed an initial phase of intensive mineralisation, followed by gradual stabilisation of nitrogen forms. Phosphorus concentrations (total phosphorus—Ptot and orthophosphate—PO43−) decreased over time, suggesting reduced potential for leaching, although the underlying mechanisms likely include immobilisation and redistribution within the manure matrix. Differences in nutrient dynamics between chicken and turkey manure were observed. A humification stabilisation index (HSI) was applied to describe changes in organic matter quality during manure storage, indicating progressive transformation towards more stable forms. However, due to the limited replication and the lack of continuous monitoring of key process parameters, the results should be interpreted as indicative rather than conclusive. Overall, the study suggests that microbial inoculation may influence nutrient transformations and support manure stabilisation processes, highlighting its potential as a complementary strategy in environmentally oriented manure management strategies.
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(This article belongs to the Topic Precision Water and Fertilizer Management Technologies and Equipment for Sustainable Agriculture)
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Open AccessArticle
Are Greenhouse Gas Emissions and Soil Chemical Characteristics Affected by Planting Density, Organic Fertilization, and Saline Water Irrigation in Cactus Pear Cultivation?
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Cleyton de Almeida Araújo, Gherman Garcia Leal de Araújo, Diana Signor Deon, Ana Paula Guimarães Santos, Fleming Sena Campos, Salete Alves de Moraes, Thieres George Freire da Silva, Deneson Oliveira Lima, Alida Maysa Dantas Resende, Glayciane Costa Gois and Tadeu Vinhas Voltolini
Nitrogen 2026, 7(2), 61; https://doi.org/10.3390/nitrogen7020061 - 2 Jun 2026
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Understanding nitrogen dynamics in arid agricultural systems is essential for mitigating greenhouse gas (GHG) emissions in climate-constrained environments. This study evaluated the effects of planting density, organic fertilization, and saline water irrigation on soil chemical properties, carbon and nitrogen stocks, and emissions of
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Understanding nitrogen dynamics in arid agricultural systems is essential for mitigating greenhouse gas (GHG) emissions in climate-constrained environments. This study evaluated the effects of planting density, organic fertilization, and saline water irrigation on soil chemical properties, carbon and nitrogen stocks, and emissions of CO2, CH4, and nitrous oxide (N2O) in cactus pear cultivation systems. A 2 × 2 × 2 factorial arrangement was used to test two planting densities (30,000 and 75,000 plants ha−1), two organic fertilizer rates (0 and 30 Mg ha−1), and two saline irrigation depths (0 and 25% of ET0). Higher planting density increased soil moisture and carbon content while reducing CO2 and CH4 emissions. Organic fertilization increased the soil C ratio and phosphorus availability and significantly enhanced N2O emissions, whereas unfertilized systems showed negative N2O fluxes. Saline water irrigation reduced N2O emissions, resulting in negative fluxes (−12.50 µg N m−2 h−1), indicating potential suppression of nitrification and denitrification pathways. None of the evaluated factors significantly affected soil nitrogen stocks. Total GHG emissions (CO2-eq) were lower in denser cultivation systems. These results demonstrate that the interaction among high planting density, organic fertilization, and supplementary saline irrigation modulates nitrogen transformations and N2O emissions in semi-arid soils, highlighting management strategies to mitigate nitrogen-derived GHG emissions in cactus-based agroecosystems.
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Open AccessReview
Rootstock–Scion Interactions in Tomato: Physiological Regulation, Stress Tolerance and Quality Enhancement
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Bhanu Prakash Singh, Anant Bahadur, Shweta Soni, Rajesh Kumar Singh, Rohit Kumar Singh, Anish Kumar Singh, Jayshree Singh, Hariom Singh, Manish Kumar Singh, Ajeet Singh, Akhilesh Yadav, Durgesh Kumar Jaiswal and Waquar Akhter Ansari
Nitrogen 2026, 7(2), 60; https://doi.org/10.3390/nitrogen7020060 - 2 Jun 2026
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Various strategies are being adopted to ensure sustainable fruit and vegetable production under the increasing population pressure and changing climatic conditions. Among these, grafting has emerged as an effective approach for improving crop performance without altering the genetic makeup of commercial cultivars. In
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Various strategies are being adopted to ensure sustainable fruit and vegetable production under the increasing population pressure and changing climatic conditions. Among these, grafting has emerged as an effective approach for improving crop performance without altering the genetic makeup of commercial cultivars. In this technique, a desirable scion is combined with a compatible rootstock possessing beneficial traits. When selected appropriately, such combinations can perform better than non-grafted plants, particularly under stress conditions. Tomato (Solanum lycopersicum L.) is one of the most important vegetable crops worldwide due to its high economic and nutritional value. Grafting in tomato has been reported to enhance plant vigor, improve tolerance to abiotic and biotic stresses, and increase yield, often in the range of 15–30% under adverse conditions. However, the success of grafting largely depends on physiological compatibility between rootstock and scion. This review focuses on the physiological basis of rootstock–scion interactions in tomato, with an emphasis on water relations, nutrient uptake, and stress tolerance mechanisms. It also discusses current research gaps and highlights the need for a better understanding of the underlying physiological processes to improve the effectiveness of grafting in tomato production.
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Open AccessArticle
Effects of Rice-Husk Biochar on Nitrogen Retention, Nitrification, and Plant Nitrogen Uptake in Decontaminated Sandy Soils in Fukushima, Japan
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Kehinde Oluwaseyi Fawibe, Shu Nakahara, Ayako Sekine, Hiroyuki Chino, Yuko Akiike, Shoko Yashio, Shimpei Uraguchi and Miwa Yashima
Nitrogen 2026, 7(2), 59; https://doi.org/10.3390/nitrogen7020059 - 1 Jun 2026
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Decontaminated sandy soils in Fukushima are characterized by low fertility and high nitrogen (N) loss, requiring effective nutrient management strategies. This study evaluated the effects of rice husk biochar on N dynamics, focusing on ammonium (NH4+) retention, nitrification, and plant
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Decontaminated sandy soils in Fukushima are characterized by low fertility and high nitrogen (N) loss, requiring effective nutrient management strategies. This study evaluated the effects of rice husk biochar on N dynamics, focusing on ammonium (NH4+) retention, nitrification, and plant N availability, using column, incubation, and pot experiments with decontaminated Fukushima soil. A significant interaction between biochar application and time indicated that biochar-applied soils showed different patterns in NH4+ and nitrate leaching over the experimental period. Incubation results showed that biochar reduced net nitrification rates (−18.1%) and tended to reduce the abundance of ammonia-oxidizing bacteria DNA. These effects may be attributed to the porous structure and adsorption properties of biochar. In the pot experiment, co-application of biochar with organic amendments (manure and kudzu) reduced plant N uptake by 9.6% and 9.0%, respectively, compared with their sole application. This indicates a trade-off between N retention and plant availability, particularly during the initial stage after biochar application. These findings highlight the importance of carefully balancing N retention and availability when applying biochar and organic amendments in low-fertility soils.
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(This article belongs to the Special Issue Soil Nitrogen Cycling: Mechanisms, Impacts and Sustainable Management)
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Open AccessReview
Compost Quality and Application Rate as Drivers of Soil Health, Nutrient Cycling, and Crop Performance: A Critical Review and Practical Rate-Design Framework
by
Bonface O. Manono
Nitrogen 2026, 7(2), 58; https://doi.org/10.3390/nitrogen7020058 - 31 May 2026
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Compost offers high potential for sustainable agriculture, but its agronomic outcomes vary. This critical review combines qualitative evidence with literature-derived quantitative benchmarks for compost maturity, salinity, nutrient loading, application-rate classes and monitoring triggers. Evidence demonstrates that mature, stable composts consistently improve soil health,
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Compost offers high potential for sustainable agriculture, but its agronomic outcomes vary. This critical review combines qualitative evidence with literature-derived quantitative benchmarks for compost maturity, salinity, nutrient loading, application-rate classes and monitoring triggers. Evidence demonstrates that mature, stable composts consistently improve soil health, including aggregation, water-holding capacity, soil organic carbon (SOC), and nutrient availability while boosting crop yield and establishment. These high-quality composts are characterized by low phytotoxicity, moderate C:N ratios, acceptable EC levels, and pathogen compliance. However, benefits are not universal. Immature or poorly stabilized compost poses risks of phytotoxicity, ammonia toxicity, and nitrogen immobilization. Excessive application rates are associated with nutrient imbalances, increased salinity, nitrate leaching, phosphorus runoff, greenhouse-gas trade-offs, and cumulative contaminant loading. To enhance the precision of rate recommendations, this review categorizes applications into four distinct tiers: starter or maintenance (2–5 Mg dry matter ha−1), common agronomic (5–20 Mg ha−1), rehabilitation (20–35 Mg ha−1), and high-risk (>35 Mg ha−1). It posits that the final application rate must be dictated by the most limiting factors, such as crop nitrogen requirements, soil-test phosphorus levels, salinity tolerance, contaminant thresholds, hydrologic risk, or specific management objectives. In conclusion, while manure-based composts enhance short-term fertility, they introduce significant risks of phosphorus accumulation and salinity compared to green-waste alternatives. This review, therefore, redefines compost not as a generic organic amendment, but as a quality-controlled, rate-sensitive input essential for precision nutrient management.
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Open AccessArticle
Nitrogen Forms Alter the Competitive Advantage of the Invasive Plant Amaranthus retroflexus over the Local Species
by
Fan Yang, Yige Zhang, Wenhui Wang, Lu Xu, Jiayu Zhang and Jing Cao
Nitrogen 2026, 7(2), 57; https://doi.org/10.3390/nitrogen7020057 - 26 May 2026
Abstract
Nitrogen forms and native plant traits jointly regulate the competitive ability of invasive plants. This study investigated the invasive species Amaranthus retroflexus and the native species Portulaca oleracea and Medicago sativa. Using a pot experiment, we analyzed their competitive effects under NO
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Nitrogen forms and native plant traits jointly regulate the competitive ability of invasive plants. This study investigated the invasive species Amaranthus retroflexus and the native species Portulaca oleracea and Medicago sativa. Using a pot experiment, we analyzed their competitive effects under NO3−-N, NH4+-N, CO(NH2)2-N and mixed nitrogen (Mix-N) treatments. The results showed that nitrogen addition had no significant effect on the relative yield of A. retroflexus but significantly increased the relative yield of P. oleracea, thereby weakening the competitive advantage of A. retroflexus. In contrast, nitrogen addition had no significant effect on the relative yield of M. sativa but significantly increased the relative yield of A. retroflexus, thereby enhancing the competitive advantage of A. retroflexus. The effect of NO3−-N treatment varied markedly between the two mixed-culture systems: it strengthened the advantage of A. retroflexus when grown with M. sativa yet weakened the advantage when grown with P. oleracea. Further analysis revealed that the competitive advantage of A. retroflexus was associated with the optimization of its photosynthetic traits and nitrogen absorption efficiency. Specifically, it included greater leaf number, leaf area, SPAD value, and leaf biomass. In summary, the competitive performance of invasive plants is not a fixed attribute but rather a dynamic outcome jointly regulated by the interplay between native plant traits and soil nitrogen forms. This provides new insight into the invasion mechanism of alien plants and aids in formulating targeted control strategies.
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(This article belongs to the Special Issue Nitrogen Management in Plant Cultivation)
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Plant Biomass Ash and Nitrogen Fertilization Raise the Soil pH, SPAD Index and Growth of Urochloa brizantha
by
Natalia do Val Tavares, Edna Maria Bonfim-Silva, Niclene Ponce Rodrigues de Oliveira, Ivis Andrei Campos e Silva, Luana Aparecida Menegaz Meneghetti, Alessana Franciele Schlichting, Helio Lopes Araújo, Salomão Lima Guimarães, Marcio Koetz, Thiago Franco Duarte and Tonny José Araújo da Silva
Nitrogen 2026, 7(2), 56; https://doi.org/10.3390/nitrogen7020056 - 22 May 2026
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Tropical pastures form the basis of livestock production in Brazil; however, their productive potential is limited by soil acidity and low nutrient availability. The objective of this study was to evaluate the interactions between biomass ash and nitrogen application rates on the soil
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Tropical pastures form the basis of livestock production in Brazil; however, their productive potential is limited by soil acidity and low nutrient availability. The objective of this study was to evaluate the interactions between biomass ash and nitrogen application rates on the soil pH, SPAD index, leaf area, shoot dry mass, and root dry mass of Marandu grass (Urochloa brizantha cv. Marandu) grown in an Oxisol. A randomized block design was used in a 5 × 5 factorial scheme, consisting of five ash rates (0, 10, 20, 30, and 40 g dm−3) using Eucalyptus-derived plant biomass ash and five nitrogen rates (0, 100, 200, 300, and 400 mg dm−3), with four replications. The treatments with ash significantly increased the soil pH, whereas the nitrogen treatments promoted leaf expansion and increased the SPAD index. Significant interactions were observed for the SPAD index, leaf area, and shoot biomass. The results indicated that plant biomass ash acted effectively as a soil acidity corrector, increasing the soil pH from 4.3 to a maximum of 6.8. The root dry mass increased independently with ash application up to 28 g dm−3 and with the nitrogen supply up to the estimated dose of 222 mg dm−3. The data were subjected to statistical analysis using R software version 4.1.2. Plant biomass ash corrects soil acidity and positively affects nitrogen fertilization to enhance the morphophysiological development and root growth of grass, indicating that it is a sustainable fertilizer for pasture management.
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Open AccessArticle
Changes in Element and NO3–N Concentrations in Grass Due to Nitrogen Fertilisation and Their Consequences for Animal Nutrition
by
Péter Ragályi, Péter Csontos, Márk Rékási, Nikolett Uzinger, Anita Szabó and András Bersényi
Nitrogen 2026, 7(2), 55; https://doi.org/10.3390/nitrogen7020055 - 18 May 2026
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N fertilisation affects the nutrient content of grasslands, and thus animal health. The effect of fertiliser treatments with calcium ammonium nitrate at doses of 0, 100, 200 and 300 kg N ha−1 year−1 was investigated on grassland nutrient content in a
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N fertilisation affects the nutrient content of grasslands, and thus animal health. The effect of fertiliser treatments with calcium ammonium nitrate at doses of 0, 100, 200 and 300 kg N ha−1 year−1 was investigated on grassland nutrient content in a long-term field experiment. The dilution effect due to biomass growth was analysed separately from other effects. The biomass of the grass increased 3.4-fold, up to 5.82 t ha−1. N fertilisation significantly reduced the concentrations of P and Mo and increased the concentrations of N, NO3–N, Na, Mn, and Cu in the grass. From a grazing or feeding perspective, N treatment adversely increased the NO3–N concentration, which exceeded the risky level of 1500 mg NO3–N kg in the 200 kg N ha year−1 treatment and decreased the P concentration. The treatments favourably increased the Na, Cu and Zn concentrations, reduced the Mo concentration, and improved the tetany index and the K:Na ratio. The 100 kg ha−1 year−1 N dose can be recommended under conditions similar to those in the experiment. It is important to analyse the element content of grass when using mineral fertiliser in order to minimise animal health risks.
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Open AccessArticle
Beyond Bulk Nitrogen: Comparing OPA-Based Fluorimetry and CE-C4D for Assessing the Nutritional Quality of Riverine Detritus
by
Tomáš Ječmen, Tomáš Křížek, Helena Ryšlavá, Kamila Tichá and Kateřina Bělonožníková
Nitrogen 2026, 7(2), 54; https://doi.org/10.3390/nitrogen7020054 - 14 May 2026
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Riverine detritus is a key nutritional resource for benthic consumers, yet its biochemical quality fluctuates rapidly and is poorly captured by bulk indicators such as elemental analysis. To improve assessment sensitivity, we compared two analytical approaches targeting organic nitrogen. We refined a fluorimetric
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Riverine detritus is a key nutritional resource for benthic consumers, yet its biochemical quality fluctuates rapidly and is poorly captured by bulk indicators such as elemental analysis. To improve assessment sensitivity, we compared two analytical approaches targeting organic nitrogen. We refined a fluorimetric assay for primary amines using o-phthalaldehyde (OPA), identifying 2 M KCl as an optimal extraction medium that maximizes recovery while minimizing matrix interference. In parallel, we optimized capillary electrophoresis with contactless conductivity detection (CE-C4D) for free amino acid determination using 0.4 M ammonium carbonate. Applied to detritus from multiple river sites and seasons, both methods showed that primary amines and amino acids vary by an order of magnitude more than total nitrogen and exhibit patterns not detectable by elemental analysis, with consistent temporal trends across catchments. Primary amine-based measurements therefore provide a more sensitive and ecologically relevant assessment of detrital nutritional quality than bulk nitrogen metrics. The OPA assay is well suited for routine monitoring due to its simplicity and robustness, whereas CE-C4D enables detailed compositional profiling where amino acid speciation is required. Overall, detrital quality reflects both intrinsic properties and recent hydrological conditions, underscoring the importance of antecedent discharge and precipitation dynamics in its interpretation.
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Open AccessReview
Beyond Nitrogen Cycling: The ‘Omic’ Orchestration of the Meta-Holobiont for Sustainable Food Sovereignty and Resource Circularity
by
Abdulkadir Bayır, Mehtap Bayır, Gökhan Arslan, Harun Arslan and Abdel Razzaq Al-Tawaha
Nitrogen 2026, 7(2), 53; https://doi.org/10.3390/nitrogen7020053 - 14 May 2026
Abstract
Aquaponics is a production system that results from the interaction between aquaculture and hydroponics. Whereas the mechanistic view of aquaculture and hydroponics has been explained using a simplistic nitrogen (N) cycle pathway, a new perspective on aquaponics could be obtained through the lens
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Aquaponics is a production system that results from the interaction between aquaculture and hydroponics. Whereas the mechanistic view of aquaculture and hydroponics has been explained using a simplistic nitrogen (N) cycle pathway, a new perspective on aquaponics could be obtained through the lens of a meta-holobiont. In this perspective, the symbiotic interplay across levels involving fish, plants, and microbes will be crucial for understanding and engineering aquaponics. With the advent of omics technology, it has become easier to explain the molecular basis of nutrient cycling and system stability. Although most available data are descriptive at present, they provide a foundation for understanding microbial interactions within the system. In this paper, we examine the genomic signatures of the N cycle, focusing on the roles of comammox bacteria and nifH-mediated N fixation. Moreover, the functionality of siderophore-producing microbes in enhancing nutrient bioavailability will be analyzed. Additionally, we explore the molecular mechanisms involved in the synthesis of secondary metabolites and Induced Systemic Resistance. Lastly, we discuss the path to aquaponics 4.0 and bio-digital twin modeling in aquaponics.
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(This article belongs to the Special Issue Innovative Nitrogen Management Strategies in Aquaponics, Hydroponics, Soilless, and Soil-Based Crop Systems for Sustainable Agriculture)
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