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Biomolecules

Biomolecules is an international, peer-reviewed, open access journal on structures and functions of bioactive and biogenic substances, molecular mechanisms with biological and medical implications as well as biomaterials and their applications, published monthly online by MDPI.

Indexed in PubMed | Quartile Ranking JCR - Q1 (Biochemistry and Molecular Biology)

All Articles (12,508)

Introduction: Peripheral blood mononuclear cells (PBMCs) constitute a diverse population of cells involved in adaptive and innate immunity, playing an essential role in pathogen recognition, immune signaling, and immune response modulation. Vitamin D deficiency through the regulation of vitamin D receptor (VDR) and calcium-sensing receptor (CaSR) gene expression could influence the apoptotic functioning of PBMCs, which, despite its importance in the immune response, has not been sufficiently explored. Objectives: This research aimed to detect differences in the mRNA expression of CaSR, VDR, and apoptosis of PBMcs between elderly women with hip fractures and vitamin D deficiency and healthy young women, as well as in older women both at baseline and after administration of calcitriol. Methods: A case–control study involving 44 women (22 and 20, respectively) was conducted. The case group (hip fracture) was administered 2 µg/day of calcitriol for two weeks and a before-and-after comparison was made. The baseline gene expression of VDR and CaSR in PBMCs, as well as the effects of calcitriol on both the VDR/CaSR regulation and PBMC apoptosis, were studied in both groups. Serum bone biomarkers were also assessed. Results: No differences were observed in creatinine and calcium serum levels between the young and elderly osteoporotic women studied. Serum phosphorus and 25-hydroxyvitamin D (25(OH)D) were low in osteoporotic fractured women with vitamin D deficiency. In contrast, intact parathyroid hormone (PTH1–84) and alkaline phosphatase were high, while no significant difference in calcitriol [l,25(OH)2D3] serum levels was observed. In elderly women, serum calcium, phosphorus, alkaline phosphatase, 25(OH)D, and calcitriol remained unchanged after intravenous calcitriol therapy; however, PTH1–84 decreased after the treatment. In comparison to the young women, the elderly women showed decreased VDR and increased CaSR mRNA expression in PBMCs, as well as higher monocyte apoptosis. Conclusions: Calcitriol administration increased both VDR and CaSR mRNA expression in PBMCs and decreased PBMC apoptosis. Conclusions: The results obtained support the role of the vitamin D endocrine system as a regulator of the immune response and thus may contribute to explaining certain aspects of the immune dysfunction reported in individuals with vitamin D insufficiency.

8 February 2026

Expression levels of VDR (A) and CaSR (B) coding genes. Total RNA was isolated from PBMCs derived from the women included in the study. The mRNA levels of the VDR and CaSR genes were quantified in each of the RNA samples obtained from the control group (n = 20, young women) and the group of elderly women (n = 22) before (Pre-calcitriol) and after (Post-calcitriol) treatment with calcitriol. The graphs show the relative expression of each gene for each of the study groups. * p < 0.05 vs. Control; + p < 0.05 vs. Pre-calcitriol. The notches in each group indicate a 95% confidence interval (CI).

Vascular remodeling is a characteristic pathological feature of various vascular diseases, including atherosclerosis, restenosis following vascular injury, hypertension, and aneurysms. The phenotypic switching of vascular smooth muscle cells (VSMCs) acts as a key driver of vascular remodeling. Under specific pathological stimuli, VSMCs rapidly transition from a contractile to a dedifferentiated phenotype, characterized by enhanced proliferation, migration, and secretory activity. Chromatin remodeling, a core mechanism of epigenetic regulation, orchestrates dynamic changes in chromatin structure and function through ATP-dependent remodeling complexes, histone-modifying enzymes, and DNA methyltransferases. These components collectively translate mechanical stress, metabolic disturbances, and inflammatory signals into reversible epigenetic modifications, thereby precisely regulating VSMC phenotypic switching. As such, chromatin remodeling represents a critical node for therapeutic intervention in vascular remodeling-related diseases. In recent years, a growing body of research has focused on the role of chromatin remodelers in regulating VSMC phenotype. In this review, we focus on the roles of ATP-dependent chromatin-remodeling factors and chromatin-modifying enzymes in the control of gene expression of VSMC phenotype switching. Firstly, we summarize the latest insights into chromatin remodeling and VSMC phenotypic switching, and then discuss recent advances in the identification and functional characterization of chromatin remodeling molecules, emphasizing their implications for VSMC behavior. Finally, we highlight the translational potential of targeting chromatin remodelers in the development of clinical therapies for vascular remodeling diseases and outline future directions for research in this field.

7 February 2026

Classification and mechanisms of major chromatin remodelers. (A) Chromatin remodeling is fundamentally dependent on ATP-dependent chromatin-remodeling complexes, histone-modifying enzymes, and DNA methylation. Mammalian ATP-dependent chromatin-remodeling complexes are classified into four major groups: SWI/SNF, ISWI, CHD, and INO80. By harnessing the energy released from ATP hydrolysis, they induce structural rearrangements in chromatin. SWI/SNF maintains regulatory regions in an open state by sliding, ejecting, or reorganizing nucleosomes. ISWI and CHD are structurally similar. ISWI senses linker DNA length to establish uniform nucleosome spacing and is essential for heterochromatin formation and genomic stability, whereas CHD recognizes diverse histone modifications, thereby recruiting or evicting specific proteins to modulate transcription. INO80 binds and translocates hexasomes to catalyze histone variant exchange, a process intimately linked to DNA replication, transcription, and repair. (B) Chromatin accessibility is also inseparable from covalent histone modifications and DNA methylation. Among the myriad of histone marks, methylation and acetylation are the most extensively characterized. The balanced state of these modifications is dynamically maintained by the concerted action of writers (that promote modification formation), readers (that recognize modification sites), and erasers (that remove or inhibit modification formation). Some representative enzymes are illustrated in the figure.

Molecular Health Effects of Electronic Cigarettes

  • Paweł Sutkowy,
  • Igor Hadryś and
  • Alina Woźniak
  • + 5 authors

Electronic cigarettes (e-cigarettes) have emerged as a prevalent substitute for conventional cigarettes, garnering perceptions of being a safer option for health. Nicotine addicts use e-cigarettes to cease smoking. These products have also become common among young people because of their taste, smell, and attractive appearance. However, accumulating experimental and clinical evidence indicates that e-cigarette use is not risk-free. The inhalation of e-cigarette aerosols exposes users and their non-using peers to a complex mixture of chemical compounds, including aldehydes, heavy metals, and flavoring agents, many of which possess pro-oxidative and pro-inflammatory properties. This review summarizes and critically analyzes current evidence on the molecular and cellular mechanisms underlying the biological effects of e-cigarette aerosols. Particular attention is given to excessive production of reactive oxygen species, mitochondrial dysfunction, DNA damage, and the activation of redox-sensitive signaling pathways, including NF-κB and NRF2. These molecular alterations may trigger acute and, with prolonged exposure, chronic oxidative stress and inflammation, which in turn can affect gene expression, protein function, and metabolic pathways. While molecular and experimental studies often demonstrate adverse biological responses to e-cigarette aerosols, the translation of these findings into long-term clinical outcomes remains an area of ongoing investigation.

7 February 2026

Electronic cigarettes. (A): open system; (B): closed system.

Human prostamide/prostaglandin F synthase (PGFS) catalyzes the NADPH-dependent conversion of prostaglandin H2 (PGH2) to prostaglandin F2α that plays a key role in regulating intraocular pressure and labor. Despite its physiological importance, structural and biochemical information of the human PGFS has been limited because of difficulties in obtaining sufficient quality of PGFS wild-type crystal and short half-life of PGH2. Here, we report the crystal structure of human PGFS with two active site mutations, C44S/C47S double mutant (DM), which mimics the reduced active form of the CXXC motif of human PGFS. Structural analysis revealed that PGFS DM adopts a typical thioredoxin (Trx)-like fold. Analysis of B-factors and MD simulations reveals that Tyr108–Asp124 is an intrinsically flexible region, devoid of any stabilizing crystal contacts. Unlike canonical Trx-like proteins, Pro167 in PGFS adopts a trans-conformation, inducing a specific Arg40 side chain localization that creates a positive charge near the CXXC motif. Activation of PGFS by reduction of disulfide bond in the CXXC motif enhanced the thermal stability via core stabilization, yet an unexpected increase in the structural disorder was detected with CD spectroscopy, especially upon ligand binding. These findings collectively establish PGFS as a structurally distinct and redox-regulated enzyme. Our results provide novel molecular insights into PGFS as an underexplored but promising therapeutic target.

7 February 2026

Catalytic mechanism of human prostamide/prostaglandin F synthase (PGFS). PGFS contains two cysteine residues (Cys44 and Cys47) in its active form (reduced state) that constitute the conserved CXXC motif. These residues play a key role in the conversion of prostaglandin H2 (PGH2) into prostaglandin F2α (PGF2α). During catalysis, PGH2 is reduced to form PGF2α, resulting the formation of disulfide bond between Cys44 and Cys45 of PGFS (oxidated or inactive state). NADPH acts as a cofactor for PGFS by reducing disulfide bond of the CXXC motif, thereby maintaining the enzyme in its catalytically active state.

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Biomolecules - ISSN 2218-273X