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  • Article
  • Open Access

Preliminary Evidence of Blood DNA Methylation Changes in Pregnant Women Adhering to a Mediterranean Diet

  • Grace Tavelli,
  • Nikki Schultz,
  • Joanna Brisbane,
  • Nina Kresoje,
  • Samantha Lodge,
  • Jeremy K. Nicholson,
  • Nicola J. Armstrong,
  • Desiree Silva,
  • Nina D’Vaz and
  • David Martino

13 February 2026

Background/Objectives: Consumption of a Mediterranean diet (MD) has been associated with reduced incidence of non-communicable diseases and reduced overall mortality, with epigenomic effects representing plausible mediators. The aim of this pilot stu...

  • Article
  • Open Access
55 Views
34 Pages

Analysis of HERV-K (HML2) Expression in Colorectal Cancer Samples

  • Valentina S. Obrezanenko,
  • Polina M. Shulga,
  • Anastasia G. Volkova,
  • Anastasia A. Primova,
  • Yulia A. Remizova,
  • Ivan O. Meshkov,
  • Alexandra D. Kikot,
  • Daria A. Tarasova,
  • Ekaterina S. Bolashova and
  • Anna S. Makarova
  • + 12 authors

12 February 2026

Background: HML-2 subgroup mobile genetic elements of the HERV-K family were described to participate in carcinogenesis processes, but their expression and epigenetic regulation in molecular subtypes of colorectal cancer (CRC) remain partly character...

  • Review
  • Open Access
206 Views
33 Pages

Genetic–Epigenetic Interplay in Epilepsy: Pathways, Biomarkers, and Epigenome-Targeted Therapies

  • Andra-Giorgiana Zaruha,
  • Patricia Codreanu,
  • Mădălin-Codruț Coman,
  • Monica Andreea Novac II,
  • Simona Gabriela Duță-Ion,
  • Ioana Ruxandra Jugănaru,
  • Iulian Andrei Hotinceanu,
  • Andra Dan,
  • Livia Mălina Burtavel and
  • Viorica-Elena Rădoi
  • + 4 authors

10 February 2026

Epilepsy is a heterogeneous neurological disorder with a strong genetic basis, yet recent evidence underscores the critical role of epigenetic mechanisms in its pathogenesis. This review synthesizes current knowledge on how chromatin remodeling, hist...

  • Article
  • Open Access
161 Views
11 Pages

Epigenetic Liquid Biopsy Marks Atrial Fibrillation: Evidence from the AF Big Picture Study

  • Riccardo Proietti,
  • Nicola Tidbury,
  • Joshua Preston,
  • Maanya Vittal,
  • Philippa McCabe,
  • Garry McDowell,
  • Gregory Y. H. Lip and
  • Manlio Vinciguerra

Background/Objectives: Atrial fibrillation (AF) is currently the most common arrhythmia worldwide, and it is linked to increased mortality and morbidity, hence the need for a better clinical stratification of AF patients. Histone complexes or nucleos...

  • Article
  • Open Access
237 Views
13 Pages

Differences in MicroRNA Expression in Firefighters Responding to a Train Derailment and Fire in East Palestine, Ohio

  • Jaclyn M. Goodrich,
  • Yaodong Xin,
  • Shawn C. Beitel,
  • John Gulotta,
  • Lu Wang,
  • Bhavya Thotakura,
  • Judith M. Graber,
  • Derek Urwin,
  • Alexander C. Mayer and
  • Jefferey L. Burgess
  • + 4 authors

Background/Objectives: High-risk, low-frequency incidents such as building collapses and large chemical fires can result in acute, high-dose exposures to toxic agents for first responders and the surrounding community. While these exposures may last...

  • Article
  • Open Access
283 Views
12 Pages

An Hsp70 Chaperone Is Involved in Meiotic Silencing by Unpaired DNA

  • Victor T. Sy,
  • Sterling S. Trawick,
  • Hagen M. Tatarsky and
  • Patrick K. T. Shiu

In the filamentous fungus Neurospora crassa, a gene not having a pairing partner during meiosis is seen as a potential intruder and is targeted by a mechanism called meiotic silencing by unpaired DNA (MSUD). MSUD employs core RNA interference (RNAi)...

  • Article
  • Open Access
195 Views
11 Pages

ARS2, a Cofactor of CBC, Promotes Meiotic Silencing by Unpaired DNA

  • Michael M. Vierling,
  • Victor T. Sy,
  • Logan M. Decker,
  • Hua Xiao,
  • Justine N. Hemaya and
  • Patrick K. T. Shiu

The presence of an extra DNA segment in a genome could indicate a transposon or another repetitive element on the move. In Neurospora crassa, a surveillance mechanism called meiotic silencing by unpaired DNA (MSUD) is maintained to monitor these self...

  • Review
  • Open Access
320 Views
18 Pages

Something Old, Something New, Something Borrowed… About the Placenta

  • Nadezhda Milova,
  • Maria Nikolova,
  • Angel Yordanov,
  • Antoan Milov and
  • Stoilka Mandadzhieva

The connection between the mother and the child has been considered one of the strongest bonds in nature. Though there are numerous factors that can influence the establishment of pregnancy, in its essence, three are considered major: a good quality...

  • Review
  • Open Access
386 Views
12 Pages

Epigenetic Alterations in Colitis-Associated Colorectal Cancer

  • Nisha Ganesh,
  • William M. Grady and
  • Andrew M. Kaz

Colitis-associated colorectal cancer (CAC) represents a distinct subtype of colorectal malignancy that arises in the setting of chronic inflammatory bowel disease (IBD). Unlike sporadic colorectal cancer, CAC develops through inflammation-driven mole...

  • Article
  • Open Access
426 Views
17 Pages

Fisetin Suppresses the Proliferative and Migratory Behavior of HeLa Cells by Modulating Aberrant Epigenetic Marks (Writers and Erasers)

  • Nazia Afroze,
  • Reham I. Alagal,
  • Lujain A. Almousa,
  • Ritu Raina,
  • Prathap Bava,
  • Lizna Mohamed Ali,
  • Tarique Noorul Hasan and
  • Arif Hussain

Purpose: The reversible deviant in epigenomic modulations is the highlight of developing new anti-cancer drugs, necessitating the use of fisetin as an epigenetic modifier in the study. Methods: In silico and molecular studies were performed to analyz...

  • Article
  • Open Access
390 Views
16 Pages

Epigenetic Regulation and Gene Expression Profiles in Cervical Swabs: Toward Non-Invasive Biomarkers of Cervical Lesion Progression

  • Ivana Kašubová,
  • Andrea Hornáková,
  • Lucia Kotúľová,
  • Tomáš Rokos,
  • Zuzana Kolková,
  • Andrea Kapinová,
  • Terézia Pribulová,
  • Erik Kozubík,
  • Michal Kalman and
  • Veronika Holubeková
  • + 2 authors

Background/Objectives: Cervical cancer is a common malignancy in women worldwide, closely associated with persistent human papillomavirus (HPV) infection. Epigenetic mechanisms, particularly promoter methylation, may contribute to tumour progression....

  • Article
  • Open Access
426 Views
19 Pages

Upregulation of a MicroRNA Signature Involving miR-17-5p, miR-26b-5p, miR-106a-5p, and miR-146a-5p During Cervical Epithelial Transformation

  • Andrea Hornakova,
  • Zuzana Kolkova,
  • Lucia Kotulova,
  • Tomas Rokos,
  • Ivana Kasubova,
  • Terezia Pribulova,
  • Erik Kozubik,
  • Kamil Biringer,
  • Erik Kudela and
  • Veronika Holubekova

Background: Cervical cancer remains the fourth most common malignancy among women worldwide. Despite vaccination and regular screening, new molecular biomarkers are needed for improved early detection and risk assessment. MicroRNAs (miRNAs) play cruc...

  • Article
  • Open Access
523 Views
15 Pages

Epigenome-Wide Search for Distinctive Methylation Biomarkers of Endothelial and Leukocyte DNA

  • Valeria A. Korolenya,
  • Maxim L. Filipenko and
  • Mariya A. Smetanina

17 December 2025

The endothelium, as the inner layer of the vascular wall, is in constant contact with blood components, so that leukocytes have the ability to adhere to endotheliocytes and penetrate to the subendothelial space. When studying heterogenic vascular sam...

  • Article
  • Open Access
1,086 Views
35 Pages

The Exosome-Mediated Epigenome: Non-Coding RNA and mRNA-Coding Networks in Microbiome–Cellular Communication, Inflammation, and Tumorigenesis Along the Oral–Gut–Lung Axis

  • Beatriz Andrea Otálora-Otálora,
  • César Payán-Gómez,
  • Juan Javier López-Rivera,
  • Luisa Fernanda Patiño-Unibio,
  • Sally Lorena Arboleda-Mojica,
  • Claudia Aristizábal-Guzmán,
  • Mario Arturo Isaza-Ruget and
  • Carlos Arturo Álvarez-Moreno

16 December 2025

Background/Objectives: The oral–gut–lung axis represents a dynamic system where exosomes carrying mRNAs and non-coding RNAs might help to regulate microbiota and human cell crosstalk to establish transcriptional regulatory networks contro...

  • Review
  • Open Access
1,040 Views
18 Pages

13 December 2025

Human life expectancy has risen dramatically in the last century, but this demographic triumph has come at the cost of an explosion of non-communicable diseases (NCDs), threatening the sustainability of healthcare systems in aging, low-fertility soci...

  • Review
  • Open Access
840 Views
19 Pages

Quantum dots (QDs) have emerged as powerful tools in biomedical applications due to their unique optical and fluorescent properties which enable highly sensitive and multiplexed detection of biomolecules. Particularly in the field of epigenetic resea...

  • Article
  • Open Access
901 Views
13 Pages

Adverse Childhood Experiences, DNA Methylation, and Depressive Symptoms in Black Pregnant Women

  • Alexandra L. Nowak,
  • Marvin A. Schilt-Solberg,
  • Xiaoyu Liang,
  • Fabiola Magaña,
  • Dawn P. Misra and
  • Carmen Giurgescu

27 November 2025

Background: Prenatal depression, affecting up to a quarter of all pregnancies in the United States, contributes to morbidity and mortality and is associated with increased risk of adverse birth and long-term mental health outcomes. Adverse childhood...

  • Review
  • Open Access
1,115 Views
21 Pages

CircRNAs—Potential Diagnostic Biomarkers and Therapeutic Targets for Receptive and Cancerous Endometrium

  • Antoan Milov,
  • Maria Nikolova,
  • Stoilka Mandadzhieva,
  • Nina Doncheva,
  • Nadezhda Milova and
  • Angel Yordanov

17 November 2025

Circular RNAs (circRNAs) are small, non-coding RNAs in which the 5′ and 3′ ends are linked covalently by back-splicing of exons from a single pre-mRNA. More and more scientific evidence is gathered for their wide distribution in the anima...

  • Review
  • Open Access
1 Citations
1,582 Views
40 Pages

Epigenetic Regulation of Salt Stress Responses in Rice: Mechanisms and Prospects for Enhancing Tolerance

  • Emanuela Talarico,
  • Eleonora Greco,
  • Francesco Guarasci,
  • Fabrizio Araniti,
  • Adriana Chiappetta and
  • Leonardo Bruno

16 November 2025

Rice (Oryza sativa L.) is a staple food for over half the global population and a model organism for monocot plant research. However, it is susceptible to salinity, with most cultivated varieties showing reduced growth at salt levels above 3 dS/m. De...

  • Systematic Review
  • Open Access
1,527 Views
24 Pages

Exploring the Impact of Nanotherapeutics on Histone H3 and H4 Acetylation Enrichment in Cancer Epigenome: A Systematic Scoping Synthesis

  • Milad Shirvaliloo,
  • Sepideh Khoee,
  • Samideh Khoei,
  • Roghayeh Sheervalilou,
  • Parisa Mohammad Hosseini,
  • Reza Afzalipour and
  • Sakine Shirvalilou

Background/Objectives: Histone acetylation regulates gene expression and plays a key role in cancer pathophysiology. Nanotherapeutics are known to modulate histone acetylation and influence cancer progression. This systematic scoping review examines...

  • Review
  • Open Access
3 Citations
1,532 Views
27 Pages

Epigenetic Mechanisms of Plant Adaptation to Cadmium and Heavy Metal Stress

  • Eleonora Greco,
  • Emanuela Talarico,
  • Francesco Guarasci,
  • Marina Camoli,
  • Anna Maria Palermo,
  • Alice Zambelli,
  • Adriana Chiappetta,
  • Fabrizio Araniti and
  • Leonardo Bruno

Heavy metal and metalloid stress, particularly from toxic elements like cadmium (Cd), poses a growing threat to plant ecosystems, crop productivity, and global food security. Elevated concentrations of these contaminants can trigger cytotoxic and gen...

  • Article
  • Open Access
1,575 Views
14 Pages

Lysine methylation is a critical post-translational modification catalyzed by lysine methyltransferases (KMTs), originally characterized in the regulation of histones. However, the breadth of non-histone targets remains largely unexplored. Here, we u...

  • Article
  • Open Access
1,040 Views
15 Pages

Background: Heart disease may take a greater toll on Black Americans than White Americans despite similar levels of traditional risk factors. Elevated alcohol consumption (EAC) and chronic inflammation are two potentially important additional risk fa...

  • Article
  • Open Access
1 Citations
1,606 Views
18 Pages

A Pilot Epigenome-Wide Study of Posttraumatic Growth: Identifying Novel Candidates for Future Research

  • Mackenzie Rubens,
  • Paul Ruiz Pinto,
  • Anita Sathyanarayanan,
  • Olivia Miller,
  • Amy B. Mullens,
  • Dagmar Bruenig,
  • Patricia Obst,
  • Jane Shakespeare-Finch and
  • Divya Mehta

Background: Posttraumatic growth (PTG) refers to positive psychological change following trauma. While its psychological aspects are well-documented, the biological mechanisms remain unclear. Epigenetic changes, such as DNA methylation (DNAm), may of...

  • Review
  • Open Access
1 Citations
2,326 Views
25 Pages

Aging of the central nervous system (CNS) involves widespread transcriptional and structural remodeling, prominently marked by synaptic loss, impaired neurogenesis, and glial dysfunction. While age-related gene expression changes have been documented...

  • Article
  • Open Access
950 Views
15 Pages

Sustained Higher Levels of Plasma hsa-miR-17-5p Expression During Gestational Diabetes Mellitus and Postpartum

  • Arathi Pillai,
  • Sibin M Kandi,
  • Nidhi Tripathy,
  • Deeptika Agarwal,
  • Indrani Mukhopadhyay,
  • Bhasker Mukherjee and
  • Y Vashum

24 September 2025

Background: The role of circulatory miRNAs in gestational diabetes mellitus (GDM) was explored extensively in previous studies. However, there was limited literature on longitudinal studies exploring the changes in miRNA expression during pregnancy a...

  • Review
  • Open Access
1 Citations
1,706 Views
14 Pages

m6A RNA Methylation in Psychiatric Disorders: An Emerging Epitranscriptomic Axis

  • Ambrose Loc Ngo,
  • Linda Nguyen,
  • Niki Gharavi Alkhansari and
  • Huiping Zhang

19 September 2025

N6-methyladenosine (m6A) is the most prevalent internal modification in eukaryotic messenger RNA (mRNA) and plays a vital role in post-transcriptional gene regulation. In recent years, m6A has emerged as a pivotal epitranscriptomic signal involved in...

  • Article
  • Open Access
983 Views
14 Pages

18 September 2025

Background/Objectives: The DNA methylome allows environmental signals to be converted into stable and adaptive changes in gene expression. While 5-methylcytosine (5mC) has been extensively studied, alternative epigenetic marks such as N6-methyladenin...

  • Article
  • Open Access
1 Citations
1,469 Views
19 Pages

Deciphering the Heterogeneity of Pancreatic Cancer: DNA Methylation-Based Cell Type Deconvolution Unveils Distinct Subgroups and Immune Landscapes

  • Barbara Mitsuyasu Barbosa,
  • Alexandre Todorovic Fabro,
  • Roberto da Silva Gomes and
  • Claudia Aparecida Rainho

5 September 2025

Background: Pancreatic ductal adenocarcinoma (PDAC) is a highly heterogeneous malignancy, characterized by low tumor cellularity, a dense stromal response, and intricate cellular and molecular interactions within the tumor microenvironment (TME). Alt...

  • Systematic Review
  • Open Access
1,455 Views
23 Pages

An Epigenomic Meta-Analysis of Differentially Methylated Sites in Pre- and Post-Metabolic/Bariatric Surgery Adult Female Patients

  • Agnieszka Lovett,
  • Graham A. Hitman,
  • Georgios K. Dimitriadis,
  • Alice M. Murphy,
  • Gyanendra Tripathi and
  • Aparna Duggirala

Background/Objectives: Metabolic/bariatric surgery is currently the most successful treatment for patients with obesity; however, a fifth of patients undergoing surgery may not lose enough weight to be considered successful. Recent studies have shown...

  • Review
  • Open Access
4 Citations
3,007 Views
35 Pages

Epigenetic regulation, particularly DNA methylation, plays a crucial role in plant adaptation to environmental stresses by modulating gene expression without altering the underlying DNA sequence. In response to major abiotic stresses such as salinity...

  • Review
  • Open Access
2 Citations
1,626 Views
18 Pages

Epigenetic Mechanisms in Neurofibromatosis Types 1 and 2

  • Christina Stylianides,
  • Gavriel Hadjigavriel,
  • Paschalis Theotokis,
  • Efstratios Vakirlis,
  • Soultana Meditskou,
  • Maria Eleni Manthou and
  • Iasonas Dermitzakis

Neurocutaneous syndromes, known as phakomatoses, encompass a diverse group of congenital conditions affecting the nervous system and skin, with neurofibromatosis type 1 (NF1) and neurofibromatosis type 2 (NF2) among the most clinically significant. B...

  • Review
  • Open Access
1,871 Views
28 Pages

Role of Ionizing Radiation in Shaping the Complex Multi-Layered Epigenome

  • Claudia E. Rübe,
  • Mutaz A. Abd Al-razaq,
  • Carola Meier,
  • Markus Hecht and
  • Christian Rübe

The impact of ionizing radiation (IR) with induction of various DNA damage is based not only on genetic but also on epigenetic effects. Epigenetic modifications determine the chromatin structure and DNA accessibility, thereby regulating cellular func...

  • Article
  • Open Access
1,274 Views
20 Pages

DNA Methylation Status of Regulatory Regions of Apoptosis-Associated Genes in Dystropy «Huntington’s Disease—Non-Small Cell Lung Cancer»

  • Nadezhda P. Babushkina,
  • Elena Yu. Bragina,
  • Densema E. Gomboeva,
  • Iuliia A. Koroleva,
  • Sergey N. Illarioshkin,
  • Sergey A. Klyushnikov,
  • Nataliya Yu. Abramycheva,
  • Maria A. Nikitina,
  • Valentina M. Alifirova and
  • Valery P. Puzyrev
  • + 11 authors

Background. Studies of comorbid (syntropic) and inversely comorbid (rarely occurring together, i.e., dystropic) diseases have focused on the search for molecular causes of this phenomenon. Materials. We investigated DNA methylation levels in regulato...

  • Article
  • Open Access
1 Citations
1,305 Views
21 Pages

Targeting the Kynureninase–HDAC6–Complement Axis as a Novel Therapeutic Strategy in Glioblastoma

  • Arif Ul Hasan,
  • Sachiko Sato,
  • Mami Obara,
  • Yukiko Kondo and
  • Eiichi Taira

Background/Objectives: Glioblastoma (GBM) is an aggressive brain tumor known for its profound heterogeneity and treatment resistance. Dysregulated complement signaling and epigenetic alterations have been implicated in GBM progression. This study ide...

  • Article
  • Open Access
1,294 Views
17 Pages

Epigenomic Interactions Between Chronic Pain and Recurrent Pressure Injuries After Spinal Cord Injury

  • Letitia Y. Graves,
  • Melissa R. Alcorn,
  • E. Ricky Chan,
  • Katelyn Schwartz,
  • M. Kristi Henzel,
  • Marinella Galea,
  • Anna M. Toth,
  • Christine M. Olney and
  • Kath M. Bogie

Background/Objectives: This study investigated variations in DNA methylation patterns associated with chronic pain and propensity for recurrent pressure injuries (PrI) in persons with spinal cord injury (SCI). Methods: Whole blood was collected from...

  • Article
  • Open Access
1,965 Views
17 Pages

Exploring Epigenetic Ageing Using Direct Methylome Sequencing

  • Elena-Cristina Găitănaru,
  • Roua Gabriela Popescu,
  • Andreea-Angelica Stroe,
  • Sergiu Emil Georgescu and
  • George Cătălin Marinescu

Background/Objectives: Advances in nanopore sequencing have opened new avenues for studying DNA methylation at single-base resolution, yet their application in epigenetic ageing research remains underdeveloped. Methods: We present a novel framework t...

  • Article
  • Open Access
1,373 Views
24 Pages

Trends in DNA Methylation over Time Between Parous and Nulliparous Young Women

  • Su Chen,
  • John W. Holloway,
  • Wilfried Karmaus,
  • Hongmei Zhang,
  • S. Hasan Arshad and
  • Susan Ewart

Background/Objectives: The experience of pregnancy and parturition has been associated with long-term health effects in mothers, imparting protective effects against some diseases while the risk of other diseases is increased. The mechanisms that dri...

  • Review
  • Open Access
8 Citations
2,422 Views
17 Pages

Epigenetic modifications act as crucial regulators of gene activity and are influenced by both internal and external environmental factors, with diet being the most impactful external factor. On the other hand, cellular metabolism encompasses a compl...

  • Article
  • Open Access
1 Citations
1,972 Views
12 Pages

Methylation of the Glucocorticoid Receptor Gene in Children with Somatic Symptom Disorder: A Case-Control Study

  • Kyoko Hatta,
  • Masato Kantake,
  • Kyoko Tanaka,
  • Hirofumi Nakaoka,
  • Toshiaki Shimizu and
  • Hiromichi Shoji

Background: Somatic symptom disorder (SSD) in children may be influenced by stress reactivity and psychosocial factors. The glucocorticoid receptor (GR), encoded by NR3C1, is a key mediator of stress responses. However, the relationship between NR3C1...

  • Review
  • Open Access
3,301 Views
15 Pages

R-loops, three-stranded RNA-DNA hybrid nucleic acid structures, are recognized for their roles in both physiological and pathological processes. Regulation of R-loops is critical for genome stability as disruption of R-loop homeostasis can lead to ab...

  • Review
  • Open Access
2 Citations
1,897 Views
23 Pages

Epigenetic Insights into Tuberous Sclerosis Complex, Von Hippel–Lindau Syndrome, and Ataxia–Telangiectasia

  • Gavriel Hadjigavriel,
  • Christina Stylianides,
  • Evangelos Axarloglou,
  • Maria Eleni Manthou,
  • Efstratios Vakirlis,
  • Paschalis Theotokis,
  • Soultana Meditskou and
  • Iasonas Dermitzakis

Neurocutaneous syndromes represent a clinically and genetically heterogeneous group of disorders, with tuberous sclerosis complex (TSC), von Hippel–Lindau syndrome (VHL), and ataxia–telangiectasia (A-T) exemplifying some of the most compl...

  • Article
  • Open Access
2,095 Views
17 Pages

Association of Model-Predicted Epigenetic Age and Female Infertility

  • Elena Pozdysheva,
  • Vitaly Korchagin,
  • Tatiana Rumyantseva,
  • Daria Ogneva,
  • Vera Zhivotova,
  • Irina Gaponova,
  • Konstantin Mironov and
  • Vasily Akimkin

Background: To date, there are no precise clinical and laboratory methods to accurately predict the onset of fertility decline in women, with chronological age being the ultimate predictor. This has led to increased interest in developing methods to...

  • Opinion
  • Open Access
3 Citations
3,387 Views
13 Pages

This review paper highlights the importance of educating current and future professionals about epigenetic mechanisms and recognizing epigenetics as a crucial model for protection against ionizing radiation. Two basic models for radiation-induced DNA...

  • Review
  • Open Access
1,307 Views
19 Pages

Genetics and Epigenetics of Chemoinduced Oral Mucositis in Paediatric Patients with Haematological Malignancies—A Review

  • Juliana Ramalho Guimarães,
  • José Maria Chagas Viana Filho and
  • Naila Francis Paulo de Oliveira

Background: Oral mucositis (OM) is a painful inflammation resulting from chemotherapy. It is dependent on factors such as age, gender, chemotherapy regimen, oral health, immunological and nutritional status, and genetics. Objectives: The aim of the s...

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Epigenomes - ISSN 2075-4655