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Epigenomes, Volume 10, Issue 2

2026 June - 21 articles

Cover Story: Natural products have emerged as promising sources of bioactive compounds with potential applications in cancer prevention and therapy. Among these, several plant-derived metabolites are capable of modulating epigenetic mechanisms involved in tumor initiation and progression. This article explores how phytochemicals influence DNA methylation, histone modifications, and non-coding RNA, thereby regulating the expression of genes associated with cell proliferation, apoptosis, and immune responses in ovarian cancer. By integrating evidence from basic and applied research, the study discusses the translational potential of these compounds as anti-tumor agents and highlights their relevance as candidates for future epigenetic therapies and biomarker development in ovarian cancer. View this paper
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Articles (21)

  • Article
  • Open Access
1,094 Views
16 Pages

Vigorous Physical Activity Mitigates Susceptibility to Obesity Associated with Risk Genotypes of FTO and MC4R, and SREBF1 Is Hypermethylated: A Cross-Sectional Pilot Study

  • Jenni Chambers,
  • Mary Erazo Bastidas,
  • Clare M. P. Roscoe,
  • Corinna Chidley and ,
  • Aaisha Makkar and
  • Aparna Duggirala
  • + 1 author+ 0 author

Aim: The aim of this study was to correlate single-nucleotide polymorphisms (SNPs) in the FTO and MC4R genes with body composition (BC) in populations with various levels of physical activity, and to investigate associations of SREBF1 methylation wit...

(This article belongs to the Special Issue Epigenetic Signatures in Metabolic Health and Cancer)
  • Article
  • Open Access
1,443 Views
19 Pages

Remodelling of miRNA Regulatory Landscape During West Nile Virus (WNV) Infection

  • Lachlan De Hayr,
  • Alexander A. Khromykh and
  • Andrii Slonchak

Background/Objectives: West Nile virus (WNV) remains a significant threat to human health, with no approved antiviral treatments or vaccine available. A better understanding of the molecular mechanisms governing flavivirus–host interactions is...

(This article belongs to the Special Issue Epigenetics Meets Immunology: Mechanisms, Crosstalk, and Therapeutic Implications)
  • Review
  • Open Access
2,025 Views
26 Pages

The Role of Epigenetics in Corneal Fibrosis

  • Julia T. Coelho,
  • Ella J. Dewald,
  • Syeda R. Ali,
  • Moira L. Geary and ,
  • Mithun Santra and
  • Gary H. F. Yam
  • + 1 author+ 0 author

Epigenetics regulates gene activity without altering the underlying DNA sequences. Numerous studies have highlighted the importance of epigenetics in diverse physiological processes, including cell growth, differentiation, and tissue development. Inc...

(This article belongs to the Collection Feature Papers in Epigenomes)
  • Review
  • Open Access
3 Citations
1,804 Views
31 Pages

Background/Objectives: As important post-transcriptional and epigenetic regulators of gene expression, miRNAs play a pivotal role in modulating host–virus interactions. While prior reviews have addressed either direct miRNA–HIV genome int...

(This article belongs to the Special Issue Epigenetics Meets Immunology: Mechanisms, Crosstalk, and Therapeutic Implications)
  • Review
  • Open Access
2,187 Views
29 Pages

5mC and 6mA DNA Methylation in the Fungal Kingdom: From Genome Defense to Epigenetic Regulation

  • Daniil P. Malyshev,
  • Vasiliy V. Belov,
  • Elizaveta S. Gromova,
  • Andrey A. Eremin and ,
  • Maria I. Zvereva and
  • Alexander V. Sergeev
  • + 1 author+ 0 author

DNA methylation, the covalent addition of methyl groups to cytosine (5mC) or adenine (6mA) in DNA, is a fundamental mechanism of epigenetic inheritance conserved from bacteria to humans. Fungi provide a uniquely informative window into the evolutiona...

  • Article
  • Open Access
887 Views
12 Pages

Low Depth Epigenetic Mapping of Maturation Versus Retrodifferentiation in HepaRG Cells

  • Hector Hernandez-Vargas,
  • Kilian Petitjean,
  • Marie-Pierre Lambert,
  • Yoann Daniel and ,
  • Isabelle Chemin,
  • Anne Corlu and
  • Chloe Goldsmith
  • + 2 authors+ 0 author

Background: Long-read, single-CpG-resolution sequencing is redefining the information-to-depth ratio in epigenomics. While conventional methylome analysis often requires high coverage, we propose a scalable pipeline designed to extract high-density r...

(This article belongs to the Collection Feature Papers in Epigenomes)
  • Article
  • Open Access
1,338 Views
20 Pages

Longitudinal Analysis of Peripheral MicroRNA Expression and Depressive Symptom Severity Change in a Community Cohort

  • Jan Dahrendorff,
  • Chengqi Wang,
  • Agaz Wani,
  • Zachary Graham and ,
  • Allison E. Aiello,
  • Annie Qu,
  • Derek E. Wildman and
  • Monica Uddin
  • + 3 authors+ 0 author

Background: Depression is a heterogeneous and recurrent condition, whose underlying biological mechanisms remain poorly understood. MicroRNAs (miRNAs), small non-coding RNAs that regulate post-transcriptional gene expression, are increasingly implica...

  • Article
  • Open Access
1,490 Views
16 Pages

LincRNA-BC7 as a Modulator of Olaparib Sensitivity in Triple-Negative Breast Cancer

  • Olalekan Olatunde Fadebi,
  • Babatunde Adebola Alabi,
  • Richard Khanyile,
  • Zodwa Dlamini and
  • Rahaba Marima

Background: Triple-negative breast cancer (TNBC) remains a clinical challenge due to its aggressive nature and the frequent emergence of therapeutic resistance. While the role of protein-coding genes in DNA repair is well-documented, the regulatory c...

  • Article
  • Open Access
1,912 Views
14 Pages

DNA Methylation at Birth Showing Age-Specific Association with Atopy in Children: A Prospective Longitudinal Study

  • Nahid Sultana,
  • Fen Yang,
  • Negusse Kitaba,
  • Stephen Potter and ,
  • John W. Holloway,
  • S. Hasan Arshad and
  • Hongmei Zhang
  • + 2 authors+ 0 author

Background: The relationship between neonatal DNA methylation (DNAm) and childhood atopy, particularly its temporal dynamics, remains inadequately characterized. Establishing this will provide insights into the epigenetic mechanisms underlying atopy...

(This article belongs to the Collection Feature Papers in Epigenomes)
  • Article
  • Open Access
1,784 Views
17 Pages

Sperm Imprinted Gene Methylation and DNA Fragmentation in ICSI Outcomes: A Pilot Study

  • Anna Chiara Conflitti,
  • Fani Konstantinidou,
  • Alessandra Buonacquisto,
  • Gaia Cicolani and ,
  • Enrico Delli Paoli,
  • Silvia Di Chiano,
  • Antonella Linari,
  • Ludovico Muzii,
  • Serena Bianchini and
  • Donatella Paoli
  • + 10 authors+ 5 authors

Background/Objectives: Aberrant DNA methylation of imprinted genes and increased sperm DNA fragmentation (SDF) have been implicated in male infertility. However, their impact on assisted reproductive technology (ART) outcomes remains unclear. This pi...

  • Review
  • Open Access
2,239 Views
15 Pages

The ubiquitously transcribed tetratricopeptide repeat Y-linked gene (UTY/KDM6C), a catalytically impaired histone demethylase encoded on the Y chromosome, has garnered increasing attention for its emerging roles in tumorigenesis and cancer progressio...

(This article belongs to the Special Issue Epigenetic Signatures in Metabolic Health and Cancer)
  • Article
  • Open Access
2,143 Views
23 Pages

Epigenome-Wide DNA Methylation Levels During Pregnancy: Associations with Parity Across Diverse Populations

  • Su Chen,
  • Yunsung Lee,
  • Siri E. Håberg,
  • Per Magnus and ,
  • Christian Magnus Page,
  • Emese H. C. Kovács,
  • Anne L. Dunlop,
  • Alicia K. Smith,
  • John W. Holloway and
  • Susan L. Ewart
  • + 7 authors+ 2 authors

Background/Objectives: Parity, the number of times a woman carries a pregnancy to viability, has been linked to long-term maternal health outcomes. The mechanisms linking parity to health outcomes are poorly understood but may reflect influences of p...

(This article belongs to the Collection Feature Papers in Epigenomes)
  • Article
  • Open Access
1,494 Views
14 Pages

Background/Objectives: Opioid use disorder (OUD) is caused by a complex interplay between genetic and non-genetic factors. DNA methylation is an epigenetic mechanism that modulates gene expression. Data on DNA methylation and opioid addiction and tre...

  • Review
  • Open Access
1,826 Views
22 Pages

Hyaluronan (HA) is a ubiquitous extracellular matrix (ECM) component that is gaining significant attention for its diverse roles in cell signalling and disease. The biological functions of HA are dependent on its molecular weight (Mw): low Mw polysac...

  • Article
  • Open Access
2 Citations
1,567 Views
16 Pages

Age-Related Epigenetic Drift Shapes Coordinated microRNA Promoter Methylation and Expression in Prostate Cancer

  • Fernando Bergez-Hernández,
  • Martín Irigoyen-Arredondo,
  • Lizeth Carolina Flores-Méndez and
  • Alejandra Paola Martínez-Camberos

Background: Aging is the strongest risk factor for prostate cancer (PCa). It is accompanied by progressive epigenomic divergence, known as epigenetic drift, particularly affecting DNA methylation at regulatory regions. However, the extent to which ag...

(This article belongs to the Collection Feature Papers in Epigenomes)
  • Article
  • Open Access
1,163 Views
12 Pages

Novel Perspectives on ATP8A2 Regulation: Evidence for Parental Imprinting and Chimeric Transcript Formation

  • Abdelhamid Bouramtane,
  • Badreddine Elmakhzen,
  • Amal Ouskri,
  • Mohamed Ahakoud and ,
  • Laila Bouguenouch,
  • Karim Ouldim and
  • Omar Askander
  • + 2 authors+ 0 author

Background: Parental imprinting plays a crucial role in epigenetic regulation and is increasingly recognized for its involvement in neurodevelopmental disorders. Although ATP8A2 is considered a non-imprinted gene; However, the marked phenotypic varia...

  • Article
  • Open Access
1 Citations
1,930 Views
14 Pages

Mitochondrial D-Loop Region Methylation Is Not Altered in Children with Autism Spectrum Disorder

  • Andrea Stoccoro,
  • Carmela Serpe,
  • Antonia Parmeggiani,
  • Vincenzo Davide Catania and ,
  • Mario Lima,
  • Alessandro Ghezzo,
  • Cristina Panisi,
  • Marida Angotti,
  • Beatrice Pranzetti and
  • Fabio Coppedè
  • + 9 authors+ 4 authors

Background/Objectives: Although the etiopathogenesis of autism spectrum disorder (ASD) remains incompletely elucidated, current evidence supports a multifactorial model involving genetic and environmental factors that interact to induce a heterogeneo...

(This article belongs to the Collection Feature Papers in Epigenomes)
  • Review
  • Open Access
1 Citations
3,179 Views
20 Pages

The Many Faces of SetDB1

  • Stanislav E. Romanov and
  • Dmitry E. Koryakov

The conserved protein SetDB1 has been identified in various vertebrate and invertebrate groups. It plays key roles in vital processes such as germline and nervous system development, immune response, tumorigenesis, cell cycle progression, and others....

  • Review
  • Open Access
2,569 Views
35 Pages

Natural Compounds as Epimodulators in Epithelial Ovarian Cancer

  • Mélida del Rosario Lizarazo-Taborda,
  • Julio César Villegas-Pineda,
  • Holver Parada,
  • Fabian Galvis and
  • Javier Soto

Epithelial ovarian carcinoma (EOC) is the most common type of ovarian cancer and represents the most lethal gynecologic neoplasm. EOC is usually diagnosed at late stages due to its nonspecific signs and symptoms. Although significant clinical advance...

  • Article
  • Open Access
4,134 Views
20 Pages

Epigenetic Age Feedback as a Catalyst for Sustained Lifestyle Change: One-Year Results from the EU iHelp Study

  • Nien-yu Yang,
  • Yicong Huang,
  • Chaewon Park,
  • Te-Min Ke and ,
  • Graham Tilston,
  • George Manias,
  • Dimosthenis Kyriazis,
  • Jon Young,
  • Susan Hart and
  • Kenneth R. Muir
  • + 7 authors+ 2 authors

Background: Sustaining long-term lifestyle change remains a major challenge in preventive health. Epigenetic clocks offer a dynamic, modifiable measure of biological ageing that may enhance motivation when returned to individuals. Objectives: This st...

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Epigenomes - ISSN 2075-4655