Journal Description
Diversity
Diversity
is a peer-reviewed, open access journal on the science of biodiversity from molecules, genes, populations, and species, to ecosystems and is published monthly online by MDPI.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubAg, GEOBASE, CAPlus / SciFinder, and other databases.
- Journal Rank: JCR - Q2 (Biodiversity Conservation) / CiteScore - Q2 (Agricultural and Biological Sciences (miscellaneous))
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 15.4 days after submission; acceptance to publication is undertaken in 3.5 days (median values for papers published in this journal in the first half of 2024).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
Impact Factor:
2.1 (2023);
5-Year Impact Factor:
2.3 (2023)
Latest Articles
Oxygen Concentration and Its Implications for Microbial Structure and Metabolism: A Case Study in a Deep Tropical Reservoir
Diversity 2024, 16(8), 444; https://doi.org/10.3390/d16080444 - 26 Jul 2024
Abstract
The vertical stratification of oxygen concentration in deep reservoirs impacts nutrient cycling and ecosystem biodiversity. The Serra da Mesa reservoir, the largest in Brazil, was studied to evaluate the structure and production of the prokaryote community at five depths. Using 3H leucine
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The vertical stratification of oxygen concentration in deep reservoirs impacts nutrient cycling and ecosystem biodiversity. The Serra da Mesa reservoir, the largest in Brazil, was studied to evaluate the structure and production of the prokaryote community at five depths. Using 3H leucine incorporation and fluorescent in situ hybridization (FISH), the study focused on different depths near the dam, particularly within the euphotic zone. The water column was characterized into oxic, transitional, and hypoxic layers based on dissolved oxygen concentration. The highest densities and biomasses of prokaryotes were found at the euphotic zone’s depth limit, where bacterial production was low, suggesting inactive or slow-growing bacteria. Cell size differences and filamentous bacteria presence near the surface were observed, likely due to varying predation pressures. Prokaryote community composition differed across depths. At the subsurface level, with high dissolved organic carbon, alphaproteobacteria, betaproteobacteria, and Cytophaga–Flavobacter had similar densities, but the lowest bacterial biomass was recorded. The highest dissolved oxygen concentration depth had the lowest bacterial density, dominated by alphaproteobacteria and gammaproteobacteria. The study revealed that prokaryotic community structure and production vary with depth, indicating that microbial participation in layer dynamics is differentiated, with variations in abundance and distribution linked to oxygen concentrations.
Full article
(This article belongs to the Special Issue Beyond the Progress: Exploring the Trade-Offs of Biodiversity and Renewable Energy Technologies in Aquatic Ecosystems)
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Open AccessArticle
Pollen and Seed Morphology as Taxonomic Markers in Verbascum Taxa Based on Herbarium Specimens of MARIUM
by
Fatma Mungan Kılıç
Diversity 2024, 16(8), 443; https://doi.org/10.3390/d16080443 - 26 Jul 2024
Abstract
Herbaria are vital resources of biodiversity education and conservation. They contain significant dried collections and botanical data of plant species that are useful for taxonomy, systematics, and plant-based applied research applications. Verbascum L. is the largest genus within the Scrophulariaceae family globally. However,
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Herbaria are vital resources of biodiversity education and conservation. They contain significant dried collections and botanical data of plant species that are useful for taxonomy, systematics, and plant-based applied research applications. Verbascum L. is the largest genus within the Scrophulariaceae family globally. However, the high morphological diversity within the genus poses significant challenges for accurate species delimitation. This study investigated the pollen and seed morphology of seven distinct Verbascum groups (comprising 10 taxa, including three endemics) from southeastern Anatolia using scanning electron microscopy (SEM). SEM analyses revealed that all examined taxa possessed tricolporate pollen apertures, with pollen shapes varying between prolate spheroidal and oblate spheroidal. Seeds exhibited a light brown to dark brown color, with a prismatic oblong shape and alveolate surface. The seed coat ornamentation consisted of irregular polygonal cells, densely covered with distinct vesicles. Findings demonstrate significant morphological distinctions in both pollen and seed characteristics, suggesting their utility in taxonomic discrimination within Verbascum groups. Notably, the detailed micromorphology revealed by SEM proved to be particularly valuable for classifying these taxa. These results contribute the understanding of the taxonomic diversity within Verbascum and highlight the crucial role of SEM in uncovering microstructural details for accurate species identification.
Full article
(This article belongs to the Special Issue Herbaria: A Key Resource for Plant Diversity Exploration)
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Open AccessArticle
Selecting Monitoring Methods for Endangered Trout Populations
by
Paolo Casula, Francesco Palmas, Francesco Curreli and Andrea Sabatini
Diversity 2024, 16(8), 442; https://doi.org/10.3390/d16080442 - 25 Jul 2024
Abstract
Endangered trout populations can be monitored with a variety of methods, the selection of which should consider social constraints and environmental variables known to affect method effectiveness. Here, we confront the effectiveness of four monitoring methods (removal with electrofishing, ELE; underwater camera survey,
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Endangered trout populations can be monitored with a variety of methods, the selection of which should consider social constraints and environmental variables known to affect method effectiveness. Here, we confront the effectiveness of four monitoring methods (removal with electrofishing, ELE; underwater camera survey, UCS; streamside visual survey, SVS; visual surveys with angling, VSA) to estimate the relative abundance of three populations of the endangered Mediterranean brown trout. The trout counts obtained via different methods were well correlated (r = 0.65–0.72), providing a coherent description of the relative pool abundance across the methods. However, the methods were differently affected by environmental variables, depending on the age classes of trout. Specifically, the adult and subadult counts provided by ELE and VSA were negatively and positively affected by the maximum pool depth, respectively; adult and subadult counts of VSA and the SVS were positively affected by pool area; the juvenile counts provided by the UCS were positively affected by pool shade and negatively affected by water turbidity; juvenile counts provided by VSA were positively affected by shade. Variables such as pool depth, area, shading, water turbidity and proportion of age classes can be hardly controlled in monitoring programs, and their bias could be modelled. Different sampling methods provided similar information about relative abundance and appeared equivalent. While ELE could be selected to collect samples and biometric data, monitoring relative abundance with the UCS, VSA, and SVS appears more suited and can also involve citizen scientists.
Full article
(This article belongs to the Section Biodiversity Conservation)
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Open AccessArticle
Decoding Anotylus (Thomson 1859) Beetle Diversity: DNA and External Morphology Match in Área de Conservaciόn Guanacaste, Costa Rica
by
K. Dante Underwood, Robert Puschendorf, David T. Bilton, Winnie Hallwachs, Daniel H. Janzen and M. Alex Smith
Diversity 2024, 16(8), 441; https://doi.org/10.3390/d16080441 - 25 Jul 2024
Abstract
Taxonomy underpins biological research because names are needed for comparative analysis, conservation status, and public communication. Despite this, many species remain undescribed and are therefore vulnerable and unprotected, particularly in the tropics. Neotropical Staphylinidae beetles (Coleoptera) are among the insect groups most likely
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Taxonomy underpins biological research because names are needed for comparative analysis, conservation status, and public communication. Despite this, many species remain undescribed and are therefore vulnerable and unprotected, particularly in the tropics. Neotropical Staphylinidae beetles (Coleoptera) are among the insect groups most likely to contain significant unknown and/or cryptic diversity. Here we used an integrative taxonomic framework to conduct a preliminary review of one particularly diverse genus of Staphylinidae (Anotylus) in Área de Conservaciόn Guanacaste, northwestern Costa Rica. We began by DNA barcoding novel collections and using Barcode Index Numbers (BINs) as an estimate of taxonomic diversity; we found 18 provisional new species. We augmented this genetic analysis with a morphometric analysis of adult morphological characters and found that we could differentiate most provisional species by external morphology as well as by elevation of collection. All the most abundant species could be differentiated from each other by differences in body size. One BIN included slight (~1%) genetic variation that corresponded with some morphological differentiation suggesting the existence of two species within a DNA BIN. Our results support the efficacy of DNA barcoding collections of tropical insects as an effective biodiversity estimator, one that can be used as a primer for integrative taxonomic studies using BINs as species hypotheses.
Full article
(This article belongs to the Special Issue Diversity, Distribution and Zoogeography of Coleoptera)
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Open AccessArticle
Diatoms’ Diversity in the Assessment of the Impact of Diamond and Oil and Gas Mining on Aquatic Ecosystems of the Central Yakut Plain (Eastern Siberia, Yakutia) Using Bioindication and Statistical Mapping Methods
by
Sophia Barinova, Viktor Gabyshev, Sergey Genkal and Olga Gabysheva
Diversity 2024, 16(8), 440; https://doi.org/10.3390/d16080440 - 24 Jul 2024
Abstract
Diamond and oil and gas production carries risks to the aquatic ecosystem. In Eastern Siberia, on the territory of the Central Yakut Plain, mining development of the Yakut diamond-bearing province and Tas-Yuryakh oil and gas condensate field has been underway for several decades.
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Diamond and oil and gas production carries risks to the aquatic ecosystem. In Eastern Siberia, on the territory of the Central Yakut Plain, mining development of the Yakut diamond-bearing province and Tas-Yuryakh oil and gas condensate field has been underway for several decades. But the problem of studying negative consequences in the region is covered only from the point of view of the impact on terrestrial ecosystems. The purpose of this study was to assess the impact of diamond and oil and gas production on the aquatic ecosystems of the region using the bioindicative properties of diatoms. The work used previously widely tested methods of ecological mapping, JASP, and species–environments relationship analysis. The results of chemical analysis of water showed that in oil and gas production areas, there is no pollution with petroleum products, but the concentration of silicon and zinc is increased. The study identified key pollutants in the Central Yakut Plain and demonstrated the effectiveness of diatoms as bioindicators. Elevated chloride levels were found in diamond mining areas, and increased copper levels were noted in oil production regions. In the diatom flora of the region, 144 species were identified, of which 137 are indicator species. Natural and anthropogenic clusters of environmental factors are identified, characterized by a specific effect on the species composition and taxonomic structure of diatom communities. The results obtained are suitable for assessing the level of anthropogenic impact on aquatic communities of photosynthetic microorganisms in permafrost conditions.
Full article
(This article belongs to the Special Issue Freshwater Biodiversity Hotspots in 2024)
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Open AccessArticle
Diversity and Distribution of Monocot Understory Herbs during Tropical Forest Succession in Northeastern Costa Rica
by
Jennifer W. C. Sun, Robin L. Chazdon and Philip W. Rundel
Diversity 2024, 16(8), 439; https://doi.org/10.3390/d16080439 - 24 Jul 2024
Abstract
Broad-leaved monocot herbs form one of the most common and diverse growth forms of Neotropical plants. Their significance and frequency of occurrence is particularly notable in the understories of tropical rainforests, where they form a dominant element. We assessed and quantified changes in
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Broad-leaved monocot herbs form one of the most common and diverse growth forms of Neotropical plants. Their significance and frequency of occurrence is particularly notable in the understories of tropical rainforests, where they form a dominant element. We assessed and quantified changes in the cover and diversity of understory herb communities in a chronosequence of 1 ha permanent plots established as part of a multidisciplinary study on tropical forest regeneration in the Atlantic lowlands of northeastern Costa Rica. Sampled were two young stands cleared 12 years ago, two secondary forests with 21 and 39 of years of recovery since clearance, and two stands in old-growth primary forest. Changes in species composition during succession were assessed using Chao’s Jaccard similarity index. Observed species richness ranged from 15 to 26 species in individual plots, with the greatest number of species in the 21-year intermediate-age and fewest in the young 12-year plots. Herb species sampled represented 6 families, 15 genera, and 39 species, with the Araceae contributing the largest number of species. Ten species were sampled in all six stands, while fourteen species were found exclusively in one plot. Herb density (ramets m−2) showed a hump-shade trend, with peak density in the intermediate stands and a lower level in mature and young secondary forests. Mean herb cover in 25 m2 quadrats ranged from 2.0% (young stand) to 22.7% (intermediate-age stand) and differed significantly both among stand types and among sites. Both observed and estimated species richness increased along the chronosequence as a whole, with the highest number of species in primary forest, although only slightly higher than in intermediate-age stands. Over half of the species exhibited some degree of clonal growth, with the extent of clonal spread varying among species and forest stands. Although we did not find a clear pattern between clonality and forest age, we observed a greater number of clonal patches in secondary over primary forest stands.
Full article
(This article belongs to the Special Issue Plant Diversity Hotspots in the 2020s)
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Open AccessArticle
Environmental Variables Outpace Biotic Interactions in Shaping a Phytoplankton Community
by
Marcella C. B. Mesquita, Caio Graco-Roza, Leonardo de Magalhães, Kemal Ali Ger and Marcelo Manzi Marinho
Diversity 2024, 16(8), 438; https://doi.org/10.3390/d16080438 - 24 Jul 2024
Abstract
We evaluated the main environmental factors (abiotic and biotic) driving the phytoplankton community in a shallow tropical reservoir located in an environmentally protected area. Phytoplankton samples were collected from the surface and bottom of the reservoir. The phytoplankton samples were later identified at
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We evaluated the main environmental factors (abiotic and biotic) driving the phytoplankton community in a shallow tropical reservoir located in an environmentally protected area. Phytoplankton samples were collected from the surface and bottom of the reservoir. The phytoplankton samples were later identified at the species level, and the species were further assigned to morphology-based functional groups (MBFGs). Zooplankton were sampled through vertical haul, communities were identified to species level, and functional diversity was estimated based on community-weighted means (CWM). Phytoplankton MBFGs IV, V, and VI contributed the most to the biomass under high light availability coupled with low nutrient availability. Potentially toxic cyanobacteria from MBFG III were observed during thermal stratification. Hydraulic mixing plays a crucial role in reducing the phytoplankton biomass during the warmer/rainy season. Cyclopoid copepods accounted for more than 83% of the zooplankton biomass. There was a weak but significant effect of zooplankton functional diversity on phytoplankton functional diversity, mainly because of the dominance of small zooplankton. Altogether, our findings suggest that environmental filtering plays a greater role than zooplankton grazing in phytoplankton community structure in this shallow tropical reservoir.
Full article
(This article belongs to the Special Issue Beyond the Progress: Exploring the Trade-Offs of Biodiversity and Renewable Energy Technologies in Aquatic Ecosystems)
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Open AccessArticle
Fish of Low Commercial Value in Lakes of Different Trophic Status (Poland)
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Krystyna Kalinowska, Dariusz Ulikowski, Michał Kozłowski, Piotr Traczuk, Maciej Szkudlarek, Konrad Stawecki and Andrzej Kapusta
Diversity 2024, 16(8), 437; https://doi.org/10.3390/d16080437 - 24 Jul 2024
Abstract
In a commercial fishery, some fish are classified as low-value, but their classification varies in different countries. The aim of this study was to determine the abundance, contribution, and dominance of low-value fish species, such as Abramis brama < 1000 g, Alburnus alburnus
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In a commercial fishery, some fish are classified as low-value, but their classification varies in different countries. The aim of this study was to determine the abundance, contribution, and dominance of low-value fish species, such as Abramis brama < 1000 g, Alburnus alburnus, Blicca bjoerkna, Gymnocephalus cernua, Perca fluviatilis < 100 g, Rutilus rutilus < 200 g, and Scardinius erythrophthalmus < 200 g, in 145 Polish lakes of different areas, depths, and trophic statuses situated in the northern and central parts of Poland in 2021. Perca fluviatilis and R. rutilus were the most frequent low-value species (100% and 99%, respectively). The contribution of all low-value fish to the total biomass of caught fish was relatively high, ranging from 37% in the mesotrophic lake to 100% in the eutrophic lake (mean of 77 ± 14%). Lakes in which the contribution of low-value species exceeded 90% were relatively numerous (24 lakes, 17% of the studied lakes). Among a total of about 437.5 thousand low-value fish, 261 thousand specimens (60%) had a body weight of below 10 g. All low-value fish species, except for P. fluviatilis and S. erythrophthalmus, were related to the studied environmental variables. The relative biomass of these species increased with increasing lake productivity, while it decreased with the increasing maximum and mean depth of the studied lakes. The high contribution of low-value fish to the total biomass in many lakes indicates the need for the constant monitoring of the abundance and structure of fish communities and the use of appropriate actions (biomanipulation and stocking with piscivorous fish species) to improve the ecological condition of lakes.
Full article
(This article belongs to the Special Issue Evaluating the Influence of Environmental Variables on Fish Ecology and Diversity)
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Open AccessArticle
First Records of Feather Mites and Haemosporidian Parasites in the Isabelline Wheatear (Oenanthe isabellina) from the Westernmost Part of the Species Breeding Range
by
Nevena Kolarova, Aneliya Bobeva, Mihaela Ilieva, Christoffer Sjöholm and Dimitar Dimitrov
Diversity 2024, 16(8), 436; https://doi.org/10.3390/d16080436 - 23 Jul 2024
Abstract
Host range expansions are an important factor for shaping the community of associated symbiotic organisms. Birds, as a highly mobile group of animals, are of particular interest to study with respect to the diversity and the distribution of the organisms using them as
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Host range expansions are an important factor for shaping the community of associated symbiotic organisms. Birds, as a highly mobile group of animals, are of particular interest to study with respect to the diversity and the distribution of the organisms using them as hosts during such large-scale movements. The Isabelline wheatear (Oenanthe isabellina) is a species with a main breeding area in Asia, which has expanded west, towards the Balkans, since the middle of the last century. We collected feather mites and blood samples for haemosporidian parasites screening from adult and juvenile Isabelline wheatears from the westernmost edge of the species breeding area in western Bulgaria. The feather mite species Alaudicola rosickyi (Černy, 1963), previously found on other wheatear species, was found for the first time on Isabelline wheatears. One species of avian malaria parasites—Plasmodium relictum (Grassi and Feletti, 1891) (lineage SGS1)—represented the first record of a malaria parasite in this host species in Europe. Increasing the sampling in the South European populations of the species will shed light on blood parasite species diversity and will reveal if other feather mite species have followed their host during its breeding range expansion.
Full article
(This article belongs to the Special Issue Bird Parasites-2nd Edition)
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Open AccessArticle
Genetic Diversity of the Lilac-Crowned Parrot (Amazona finschi), a Species Endemic to Mexico
by
Gabriela Padilla-Jacobo, Tiberio Cesar Monterrubio-Rico, Horacio Cano-Camacho and María Guadalupe Zavala-Páramo
Diversity 2024, 16(8), 435; https://doi.org/10.3390/d16080435 - 23 Jul 2024
Abstract
The Lilac-crowned Amazon (Amazona finschi) is an endemic parrot from western Mexico with a historical distribution in the Pacific Slope from southern Sonora and southwestern Chihuahua to Oaxaca. However, a particularly worrying decline in the extension of its distribution range has
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The Lilac-crowned Amazon (Amazona finschi) is an endemic parrot from western Mexico with a historical distribution in the Pacific Slope from southern Sonora and southwestern Chihuahua to Oaxaca. However, a particularly worrying decline in the extension of its distribution range has been reported in the central and southern regions. Overall, the species is listed in CITES the IUCN Red List of Threatened Species, and the official Mexican standard NOM-059 as endangered. In this study, we aimed to obtain molecular information to support the planning of conservation strategies for A. finschi. For this purpose, we analyzed the genetic diversity and genealogical relationships between two groups of individuals from northern (Sinaloa) and central (Michoacan) portions of the species’ range based on mitochondrial DNA markers. In general agreement with the endangered status of the species, we found low genetic diversity values. However, at the regional level, the northern group showed high genetic diversity and the central group showed a lack of genetic diversity. Furthermore, in agreement with the proposal that A. finschi is monotypic, genealogical relationships revealed a haplotype distributed in the center and the north, although haplotypes exclusive to the north were also found. We suggest a differentiated management of northern and central populations to preserve evolutionary potential.
Full article
(This article belongs to the Special Issue Ecology and Conservation of Parrots)
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Open AccessArticle
Historical and Contemporary Herbaria as a Source of Data in Plant Taxonomy and Phytogeography Research: An Example from Poland
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Adam Rostański, Izabela Gerold-Śmietańska and Barbara Tokarska-Guzik
Diversity 2024, 16(8), 434; https://doi.org/10.3390/d16080434 - 23 Jul 2024
Abstract
The art of drying plants has a long tradition. It was already known in the Middle Ages as a form of documenting flora. It began to develop more intensively in Europe in the 16th century. This method of documenting plant collections quickly gained
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The art of drying plants has a long tradition. It was already known in the Middle Ages as a form of documenting flora. It began to develop more intensively in Europe in the 16th century. This method of documenting plant collections quickly gained recognition among scientists. Its role and importance has changed throughout historical periods. The current study presents a short history and resources of Polish and European herbaria against the background of world data. It primarily focuses on indicating their contemporary importance in research in plant taxonomy and geography, as well as on the current situation of herbaria and problems identified using the example of Polish herbaria.
Full article
(This article belongs to the Special Issue Digitization of Natural History Collections for Biodiversity Science and Conservation)
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Open AccessArticle
Distribution, Ecology, Chorology and Phytocenology of Sweet Chestnut (Castanea sativa) in the Oltenia Region, Romania
by
Daniel Răduțoiu and Sina Cosmulescu
Diversity 2024, 16(8), 433; https://doi.org/10.3390/d16080433 - 23 Jul 2024
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This article provides useful information on the distribution of sweet chestnut (Castanea sativa) and presents additional data on the ecology, chorology and phytocenology of the species in the Oltenia region, Romania, based on literary sources, herbaria and field observations. By providing
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This article provides useful information on the distribution of sweet chestnut (Castanea sativa) and presents additional data on the ecology, chorology and phytocenology of the species in the Oltenia region, Romania, based on literary sources, herbaria and field observations. By providing accurate and detailed data, this study contributes significantly to the existing knowledge, as well as mapping efforts of the species at the European level. In the subspontaneous flora of the Oltenia region, the C. sativa species is found in sheltered resorts in the counties of Gorj (Glogova, Valea Perilor, Tismana, Pocruia, Polovragi, etc.) and Mehedinți (Comăneşti, Baia de Aramă, etc.), on mesobasic soils, balanced from a hydraulic point of view. The phytocenoses where this species grows are rich in southern elements (e.g., Cornus mas L., Cerasus avium (L.) Moench, Quercus dalechampii Ten., Tilia tomentosa Moench). They are included in the Castaneo-Quercetum Horvat 1938 association. In Romania, habitats that include areas occupied by sweet chestnut are classified within habitat R4141—Daco-Balkan forests of oak (Quercus petraea) and chestnut (C. sativa) with Genista tinctoria. This habitat has a very high biodiversity conservation value and ecological importance. According to the Natura 2000 directive, sweet chestnut forests are included in the habitat category 9260, which underlines the importance at the European level for biodiversity conservation.
Full article
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Open AccessArticle
Long-Term Monitoring of Macroinvertebrate Community Assemblages and Species Composition on the Coast of Dokdo, East Sea of Korea
by
Si Jin Gwak, Sang Lyeol Kim, Hyung-Gon Lee, Chan Hong Park and Ok Hwan Yu
Diversity 2024, 16(7), 432; https://doi.org/10.3390/d16070432 - 22 Jul 2024
Abstract
Dokdo Island’s diverse marine ecosystem requires long-term monitoring to understand the effects of rapid environmental changes, such as global warming, on macrobenthos species and communities. Current studies are often short-term and limited, highlighting the need for extended research to predict future changes to
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Dokdo Island’s diverse marine ecosystem requires long-term monitoring to understand the effects of rapid environmental changes, such as global warming, on macrobenthos species and communities. Current studies are often short-term and limited, highlighting the need for extended research to predict future changes to ecosystems. This study analyzed the environmental variables influencing macrobenthos through long-term monitoring. In total, 511 species (spp./23.4 m2) were identified with an abundance of 1709.9 individuals/m2 and a diversity of 2.9. Since 2020, there has been a decline in both the number of species and diversity, attributed to changes in sediment composition, particularly an increase in gravel and sand. The dominant species include the crustacean Abludomelita denticulata (17.6%), the polychaete Haplosyllis spongiphila (6.8%), the bivalve Glycymeris munda (5.6%), the polychaete Opisthodonta uraga (5.3%), and the bivalve Limatula japonica (3.8%). The macrobenthos community differs each year, as the dominant species G. munda has decreased in abundance since 2022 and L. japonica since 2021. Depth and gravel sediment strongly correlated with community variation. Site-specific analysis also showed significant differences, with depth, bottom temperature, and sediment composition as the influencing factors. These species thrive in cold water but their abundance declines with an increase in temperature. Continuous long-term monitoring is essential to understand and protect the Dokdo ecosystem amid rapid environmental changes. Long-term monitoring studies have revealed more species than have short-term studies, showing annual and site-specific environmental changes, including sediment erosion and bottom temperature increases. These changes have affected macrobenthos diversity, abundance, and community composition, necessitating ongoing research to determine the persistence of these trends and to protect the ecosystem.
Full article
(This article belongs to the Special Issue Dynamics of Marine Communities)
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Open AccessArticle
Agricultural Landscapes: A Pattern-Process-Design Approach to Enhance Their Ecological Quality and Ecosystem Services through Agroforestry
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Ilda Vagge, Nicolò Sgalippa and Gemma Chiaffarelli
Diversity 2024, 16(7), 431; https://doi.org/10.3390/d16070431 - 22 Jul 2024
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Agricultural landscapes are currently suffering and generating severe ecological issues. This is especially true in intensively managed alluvial contexts, where biodiversity is declining and ecosystem services (ES) delivery capacity is being depleted. The aim of our study is to set up and test
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Agricultural landscapes are currently suffering and generating severe ecological issues. This is especially true in intensively managed alluvial contexts, where biodiversity is declining and ecosystem services (ES) delivery capacity is being depleted. The aim of our study is to set up and test a synthetic analytical methodology that allows us to: understand current agricultural landscape ecological quality drivers (structural and functional traits); identify context-specific strategies to correct current negative trends (landscape ecology design approach); and assess the changes in the landscape ecological behavior provided by design scenarios. The applied methodology is low-cost and low-time-demanding and is based on multi-scale landscape ecology and land-use-based ES assessment; it implements a pattern-process-design approach. Analyses are applied to four northern Italian alluvial agricultural landscape systems. We specifically address landscape biodiversity support functions (landscape ecology indicators) and landscape multifunctionality (ES spatial assessment). We test the agroforestry approach (landscape feature insertions and crop diversification) as a key strategy to enhance ecological quality and ES, and we account for its contributions to context-specific design scenarios. This analytical toolkit might serve for future applications on similar case studies.
Full article
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Open AccessArticle
The Roles of Alpha, Beta, and Functional Diversity Indices in the Ecological Connectivity between Two Sub-Antarctic Macrobenthic Assemblages
by
Jara Nykol, Montiel Americo and Cáceres Benjamin
Diversity 2024, 16(7), 430; https://doi.org/10.3390/d16070430 - 22 Jul 2024
Abstract
The study of ecological connectivity is a global priority due to the important role it plays in the conservation of diversity. However, few studies in this context have focused on marine benthic ecosystems. To address this issue, the present work determines the ecological
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The study of ecological connectivity is a global priority due to the important role it plays in the conservation of diversity. However, few studies in this context have focused on marine benthic ecosystems. To address this issue, the present work determines the ecological connectivity between two sub-Antarctic macrobenthic assemblages through assessment of the α-, β-, and functional diversity indices. Samples were collected using a van Veen grab at stations located in Bahia Inútil and Seno Almirantazgo. The ecological analysis was based on a total of 113 invertebrate taxa. The mean abundance values were lower in Bahia Inútil (888.9 ± 26.8 ind m−2) than in Seno Almirantazgo (1358.6 ± 43.4 ind m−2). While the mean α-diversity values showed significant differences between assemblages, β- and functional diversity indices presented no significant differences. These results indicate that, despite the distance (56 km) separating the two basins from each other, there is a high degree of connectivity at the functional level between the assemblages due to the high number of shared species and their functional traits. The species most responsible for this observation were the polychaetes Capitela capitata and Aricidia (Acmira) finitima, as well as the bivalves Nucula pisum and Yoldiella sp. 1. In terms of functional biodiversity, species characterized as omnivorous and with lecithotrophic larval development were mostly responsible for connectivity between assemblages. These results suggest the importance of including β- and functional diversity indices as criteria in the future planning of marine protected areas for the maintenance of marine ecosystem integrity.
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(This article belongs to the Special Issue Functional Diversity of Soft-Bottom Benthic Communities in the Anthropocene)
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Open AccessArticle
Climate Change Threatens Barringtonia racemosa: Conservation Insights from a MaxEnt Model
by
Yanfang Tan, Xiaohui Tan, Yanping Yu, Xiaping Zeng, Xinquan Xie, Zeting Dong, Yilan Wei, Jinyun Song, Wanxing Li and Fang Liang
Diversity 2024, 16(7), 429; https://doi.org/10.3390/d16070429 - 22 Jul 2024
Abstract
Barringtonia racemosa (L.) Spreng. (Lecythidaceae), a crucial species in mangrove ecosystems, is facing endangerment primarily due to habitat loss. To address this issue, research is imperative to identify suitable conservation habitats for the endangered B. racemosa within mangrove ecosystems. The utilization of the
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Barringtonia racemosa (L.) Spreng. (Lecythidaceae), a crucial species in mangrove ecosystems, is facing endangerment primarily due to habitat loss. To address this issue, research is imperative to identify suitable conservation habitats for the endangered B. racemosa within mangrove ecosystems. The utilization of the optimized Maximum Entropy (MaxEnt) model has been instrumental in predicting potential suitable regions based on global distribution points and environmental variables under current and future climates conditions. The study revealed that the potential distribution area of B. racemosa closely aligns with its existing range with an Area Under the Curve (AUC) greater than 0.95. The Jackknife, AUC, percent contribution (PC), and permutation importance (PI) tests were employed alongside the optimized MaxEnt model to examine the influence of environmental variables on the distribution of B. racemosa. The primary factors identified as significant predictors of B. racemosa distribution included the average temperature of the ocean surface (Temperature), average salinity of the ocean surface (Salinity), precipitation of the warmest quarter (Bio18), precipitation of the driest month (Bio14), seasonal variation coefficient of temperature (Bio4), and isothermality (Bio3). Currently, the habitat range of B. racemosa is predominantly found in tropical and subtropical coastal regions near the equator. The total suitable habitat area measures 246.03 km2, with high, medium, low, and unsuitable areas covering 3.90 km2, 8.57 km2, 16.94 km2, and 216.63 km2, respectively. These areas represent 1.58%, 3.48%, 6.88%, and 88.05% of the total habitat area, respectively. The potential distribution area of B. racemosa demonstrated significant variations under three climate scenarios (SSP126, SSP245, and SSP585), particularly in Asia, Africa, and Oceania. Both low and high suitable areas experienced a slight increase in distribution. In summary, the research suggests that B. racemosa primarily flourishes in coastal regions of tropical and subtropical areas near the equator, with temperature and precipitation playing a significant role in determining its natural range. This study offers important implications for the preservation and control of B. racemosa amidst habitat degradation and climate change threats. Through a comprehensive understanding of the specific habitat needs of B. racemosa and the implementation of focused conservation measures, efforts can be made to stabilize and rejuvenate its populations in their natural environment.
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(This article belongs to the Special Issue Climate Change: Vegetation Diversity Monitoring)
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Open AccessReview
A Fossil Record of Spores before Sporophytes
by
Paul K. Strother and Wilson A. Taylor
Diversity 2024, 16(7), 428; https://doi.org/10.3390/d16070428 - 22 Jul 2024
Abstract
Because their resistant, sporopolleninous walls preserve a record of morphogenetic change during spore formation, fossil cryptospores provide a direct physical record of the evolution of sporogenesis during the algal–plant transition. That transition itself is a story of the evolution of development—it is not
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Because their resistant, sporopolleninous walls preserve a record of morphogenetic change during spore formation, fossil cryptospores provide a direct physical record of the evolution of sporogenesis during the algal–plant transition. That transition itself is a story of the evolution of development—it is not about phylogeny. Here, we review the fossil record of terrestrially derived spore/cryptospore assemblages and attempt to place these microfossils in their evolutionary context with respect to the origin of complex multicellularity in plants. Cambrian cryptospores show features related to karyokinesis seen in extant charophytes, but they also possess ultrastructure similar to that seen in liverworts today. Dyadospora, a cryptospore dyad recovered from sporangia of Devonian embryophytes, first occurs in the earliest Ordovician. Tetrahedraletes, a likely precursor to the trilete spore, first occurs in the Middle Ordovician. These fossils correspond to evolutionary novelties that were acquired during a period of genome assembly prior to the existence of upright, axial sporophytes. The cryptospore/spore fossil record provides a temporal scaffold for the acquisition of novel characters relating to the evolution of plant sporogenesis during the Cambrian–Silurian interval.
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(This article belongs to the Special Issue Phylogeny, Ages, Molecules and Fossils of Land Plants)
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Open AccessArticle
Rare Earth Elements Distribution and Bacteriome to Assess and Characterize the Soil Landscapes of Old Olive Orchards
by
Angela Roccotelli, Simone Tommasini, Maria Teresa Ceccherini, Luca Calamai, Mattia Ferrari, Matthias Ghiotto, Roberto Riccio, Lisa Bonciani, Giacomo Pietramellara, Sandro Moretti and Samuel Pelacani
Diversity 2024, 16(7), 427; https://doi.org/10.3390/d16070427 - 21 Jul 2024
Abstract
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The presence of the olive tree in Tuscany, Italy, in its forms that have survived to the present day as an essential component of the landscape dates back many centuries. Global change is now threatening it. Therefore, it is important to find markers
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The presence of the olive tree in Tuscany, Italy, in its forms that have survived to the present day as an essential component of the landscape dates back many centuries. Global change is now threatening it. Therefore, it is important to find markers to enhance the olive tree environment in terms of its resilience. The aim of the research was to investigate the composition of soil bacteriomes in contrasting geochemical environments using a geochemistry approach based on the behavior of the REEs, inherited from parent rock material. Bacteriome assemblages and REE content were analyzed in 48 topsoils developed in six geochemical Tuscan environments. Combined geochemical, geoinformatic, and bioinformatic techniques highlighted the existence of four bacteriome assemblages depending on Light-REEs. Further results showed that the soil bioavailable fraction of REEs was related to parent rock materials, pH, and bacteriome composition. The most abundant bacteria were Microlunatus in graded fluvio-lacustrine soils, Gaiella in graded arenaceous soils, Bradyrizhobium in pyroclastic soils, and Rubrobacter in soils on gentle slopes of calcareous and carbonatic lithologies. This research represents a starting point to define new indicators able to assess the resilience of the olive trees in the Mediterranean landscape and characterize the territory of extra virgin olive oils.
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Open AccessReview
Relationships Among the Bryophytes and Vascular Plants: A Case Study in Deep-Time Reconstruction
by
Yin-Long Qiu and Brent D. Mishler
Diversity 2024, 16(7), 426; https://doi.org/10.3390/d16070426 - 21 Jul 2024
Abstract
Relationships of the three bryophyte lineages (liverworts, mosses, and hornworts) to vascular plants is a pivotal question in the study of the origin and evolution of land plants. In recent decades, this question has been subjected to intense phylogenetic analyses using morphological characters,
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Relationships of the three bryophyte lineages (liverworts, mosses, and hornworts) to vascular plants is a pivotal question in the study of the origin and evolution of land plants. In recent decades, this question has been subjected to intense phylogenetic analyses using morphological characters, multigene DNA sequences, and genome structural characters. A tentative consensus, reached ten years ago, suggested that bryophytes are a paraphyletic group, with liverworts being sister to all other land plants and hornworts being sister to vascular plants. However, several more recent nuclear phylogenomic studies have concluded that bryophytes represent a monophyletic group that is sister to vascular plants. A discussion is presented here on strengths and weaknesses of different types of characters (morphological traits, nucleotide sequences, and genome structural arrangements) and their suitability for resolving deep phylogenetic relationships. Moreover, several criteria for credible phylogenetic reconstruction are proposed. Strong statistical support for reconstructed relationships should be derived from high-quality, independent characters selected for suitability to the particular question being addressed. The relationships inferred in a study should be congruent with those from as many other lines of phylogenetic evidence as possible. Any incongruities should be explicable by well-understood biological mechanisms. It is concluded that the relationships of the three bryophyte lineages to vascular plants should currently be viewed as unresolved. This is a difficult phylogenetic problem; the land plants underwent a rapid radiation a long time ago. Yet, further exploration of analytical methods and careful choice of characters should lead to the eventual elucidation of diversification patterns among early land plants.
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(This article belongs to the Special Issue Phylogeny, Ages, Molecules and Fossils of Land Plants)
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Open AccessArticle
Morphological and Molecular Identification of Porpita porpita (Hydrozoa: Porpitidae) Larval and Colonial Phases
by
Jeimy Denisse Santiago-Valentín, Eric Bautista-Guerrero, Alma Paola Rodríguez-Troncoso, María del Carmen Franco-Gordo, Mauricio Alejandro Razo-López and Enrique Godínez-Domínguez
Diversity 2024, 16(7), 425; https://doi.org/10.3390/d16070425 - 19 Jul 2024
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Porpita porpita is a colonial polymorphic hydrozoan distributed in temperate and tropical zones. This species, like most hydrozoans, possesses a metagenetic life cycle with alternating life forms: medusa stage, polypoid colony, and planula larva. However, a characterization of its early stages of development
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Porpita porpita is a colonial polymorphic hydrozoan distributed in temperate and tropical zones. This species, like most hydrozoans, possesses a metagenetic life cycle with alternating life forms: medusa stage, polypoid colony, and planula larva. However, a characterization of its early stages of development is still lacking. For this study, an integrative description of the larval stages and the hydroid colony was performed using molecular and histologic tools. The results show that P. porpita develops through three larval stages: preplanula, planula, and premetamorphic planula. The preplanula is distinguished by an absence of polarity, the planula by differentiation of the oral–aboral poles, and the premetamorphic stage by cellular differentiation. Furthermore, two morphologies of young hydroids with different developmental patterns of gonozooids and dactylozooids were observed; notably, it was not possible to observe the gastrozooid in either. Taxonomic identification was confirmed using mitochondrial (COI) and ribosomal (18S and 28S) markers. Our analysis indicates that the COI gene exhibits higher intraspecific variability compared to the 18s and 28s rDNA ribosomal genes. The presented results support the future identification of P. porpita based on morphological characteristics, regardless of the stage of development. Specifically, they shed light on the diversity of mesozooplankton in reef communities.
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