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26 Results Found

  • Article
  • Open Access
4 Citations
5,321 Views
22 Pages

30 October 2022

The post-translational import of nuclear-encoded chloroplast preproteins is critical for chloroplast biogenesis, and the Toc159 family of proteins is the receptor for this process. Our previous work identified and analyzed the Toc GTPase in tomato; h...

(This article belongs to the Special Issue Molecular Biology of Chloroplast: Structure, Function and Development)
  • Article
  • Open Access
1 Citations
3,128 Views
31 Pages

A Protein–Protein Interaction Analysis Suggests a Wide Range of New Functions for the p21-Activated Kinase (PAK) Ste20

  • Ifeoluwapo Matthew Joshua,
  • Meng Lin,
  • Ariestia Mardjuki,
  • Alessandra Mazzola and
  • Thomas Höfken

2 November 2023

The p21-activated kinases (PAKs) are important signaling proteins. They contribute to a surprisingly wide range of cellular processes and play critical roles in a number of human diseases including cancer, neurological disorders and cardiac diseases....

(This article belongs to the Section Biochemistry)
  • Article
  • Open Access
644 Views
14 Pages

Identification and Analysis of the Mpp5Ab1-Interacting Protein in the Midgut of the Colaphellus bowringi Baly

  • Yaning Huang,
  • Qiao Li,
  • Jiaqi Wang,
  • Yulei Wang and ,
  • Daolong Liao,
  • Xiaodong Sun and
  • Haitao Li
  • + 2 authors+ 0 author

29 May 2026

To elucidate the mode of action of Mpp5Ab1 against Colaphellus bowringi Baly larvae, this study aimed to identify midgut proteins interacting with the toxin. A validated bait plasmid, pBT3-SUC-mpp5Ab1, was used to screen a larval midgut cDNA library...

  • Article
  • Open Access
2,621 Views
12 Pages

Proximal Co-Translation Facilitates Detection of Weak Protein-Protein Interactions

  • Alina Kordonsky,
  • Matan Gabay,
  • Aurelia Rosinoff,
  • Reut Avishid and ,
  • Amir Flornetin,
  • Noam Deouell,
  • Taimaa Abd Alkhaleq,
  • Noa Efron,
  • Shoham Milshtein and
  • Gali Prag
  • + 7 authors+ 2 authors

16 October 2024

Ubiquitin (Ub) signals are recognized and decoded into cellular responses by Ub-receptors, proteins that tether the Ub-binding domain(s) (UBDs) with response elements. Typically, UBDs bind mono-Ub in highly dynamic and weak affinity manners, presenti...

(This article belongs to the Section Molecular Plant Sciences)
  • Article
  • Open Access
3 Citations
5,398 Views
14 Pages

Development of an Antigen-Antibody Co-Display System for Detecting Interaction of G-Protein-Coupled Receptors and Single-Chain Variable Fragments

  • Yinjie Zhang,
  • Boyang Jason Wu,
  • Xiaolan Yu,
  • Ping Luo and ,
  • Hao Ye,
  • Yan Yu,
  • Wei Han and
  • Jingjing Li
  • + 3 authors+ 0 author

G-protein-coupled receptors (GPCRs), especially chemokine receptors, are ideal targets for monoclonal antibody drugs. Considering the special multi-pass transmembrane structure of GPCR, it is often a laborious job to obtain antibody information about...

(This article belongs to the Section Molecular Pharmacology)
  • Article
  • Open Access
2 Citations
1,899 Views
15 Pages

Interaction Dynamics of Plant-Specific Insert Domains from Cynara cardunculus: A Study of Homo- and Heterodimer Formation

  • Miguel Sampaio,
  • Sofia Santos,
  • Ana Marta Jesus,
  • José Pissarra and ,
  • Gian Pietro Di Sansebastiano,
  • Jonas Alvim and
  • Cláudia Pereira
  • + 2 authors+ 0 author

30 October 2024

Plant aspartic proteinases (APs) from Cynara cardunculus feature unique plant-specific insert (PSI) domains, which serve as essential vacuolar sorting determinants, mediating the transport of proteins to the vacuole. Although their role in vacuolar t...

(This article belongs to the Section Molecular Structure)
  • Article
  • Open Access
8 Citations
5,001 Views
18 Pages

Inclusion Formation and Toxicity of the ALS Protein RGNEF and Its Association with the Microtubule Network

  • Sonja E. Di Gregorio,
  • Kathryn Volkening,
  • Michael J. Strong and
  • Martin L. Duennwald

The Rho guanine nucleotide exchange factor (RGNEF) protein encoded by the ARHGEF28 gene has been implicated in the neurodegenerative disease amyotrophic lateral sclerosis (ALS). Biochemical and pathological studies have shown that RGNEF is a componen...

(This article belongs to the Section Molecular Biology)
  • Article
  • Open Access
12 Citations
5,255 Views
16 Pages

Identification of TSPAN4 as Novel Histamine H4 Receptor Interactor

  • Xiaoyuan Ma,
  • Eléonore W. E. Verweij,
  • Marco Siderius,
  • Rob Leurs and
  • Henry F. Vischer

30 July 2021

The histamine H4 receptor (H4R) is a G protein-coupled receptor that is predominantly expressed on immune cells and considered to be an important drug target for various inflammatory disorders. Like most GPCRs, the H4R activates G proteins and recrui...

(This article belongs to the Special Issue New Developments in Histamine Research)
  • Article
  • Open Access
1,300 Views
18 Pages

A Metal Importer and Exporter Interact Differently in the Chloroplast and Cell Membrane

  • Karnelia Paul,
  • Biswajit Ray,
  • Chinmay Saha,
  • Anupam Roy and ,
  • Sohini Basu and
  • Anindita Seal
  • + 1 author+ 0 author

Metal homeostasis, which coordinates the influx and efflux of essential elements such as iron (Fe) and manganese (Mn) in chloroplasts, is essential for optimum photosynthesis, especially in metal-accumulating plants. Brassica juncea (Indian mustard)...

(This article belongs to the Special Issue Membrane Interaction Between Lipids, Proteins and Peptides, 2nd Edition)
  • Article
  • Open Access
648 Views
22 Pages

SaNAR2.2, A Novel Member of the NAR2 Family from the Euhalophyte Suaeda altissima: Molecular Cloning and Characterization

  • Dmitry E. Khramov,
  • Olga I. Nedelyaeva,
  • Anastasia Ryabova,
  • Vadim Volkov and
  • Larissa G. Popova

12 August 2026

NAR2 family proteins are involved in the uptake of nitrate by plant roots as partners of high-affinity nitrate transporters of NRT2 family. In this study, we cloned the coding sequence of a gene, which encodes a protein consisting of 196 amino acids...

(This article belongs to the Special Issue Regulation of Membrane Protein Function: Structural Mechanisms and Therapeutic Implications)
  • Article
  • Open Access
10 Citations
3,598 Views
20 Pages

Mapping and Validation of BrGOLDEN: A Dominant Gene Regulating Carotenoid Accumulation in Brassica rapa

  • Lei Zhang,
  • Shifan Zhang,
  • Yun Dai,
  • Shaoxing Wang and ,
  • Chenggang Wang,
  • Fei Li,
  • Hui Zhang,
  • Guohu Chen,
  • Lingyun Yuan and
  • Shujiang Zhang
  • + 10 authors+ 5 authors

18 October 2022

In plants, the accumulation of carotenoids can maintain the balance of the photosystem and improve crop nutritional quality. Therefore, the molecular mechanisms underlying carotenoid synthesis and accumulation should be further explored. In this stud...

(This article belongs to the Special Issue Molecular Genetics and Plant Breeding 2.0)
  • Article
  • Open Access
3 Citations
2,721 Views
17 Pages

Functional Characterization of Potato UBC13-UEV1s Genes Required for Ubiquitin Lys63 Chain to Polyubiquitination

  • Weigang Liu,
  • Xun Tang,
  • Xue Fu,
  • Huanhuan Zhang and ,
  • Cunlan Zhu,
  • Ning Zhang and
  • Huaijun Si
  • + 2 authors+ 0 author

26 January 2023

Ubiquitin-conjugating enzymes (E2s/UBC) are components of the ubiquitin proteasome system (UPS), and the ubiquitin-conjugating enzyme variant (UEV) is one of E2s (ubiquitin-conjugating enzymes, UBC) subfamily. The UEVs and UBC13 play an auxiliary rol...

(This article belongs to the Collection Feature Papers in Molecular Plant Sciences)
  • Article
  • Open Access
3 Citations
2,893 Views
14 Pages

Investigating the p21 Ubiquitin-Independent Degron Reveals a Dual Degron Module Regulating p21 Degradation and Function

  • Marianna Riutin,
  • Pnina Erez,
  • Julia Adler,
  • Assaf Biran and ,
  • Nadav Myers and
  • Yosef Shaul
  • + 1 author+ 0 author

9 October 2024

A group of intrinsically disordered proteins (IDPs) are subject to 20S proteasomal degradation in a ubiquitin-independent manner. Recently, we have reported that many IDPs/IDRs are targeted to the 20S proteasome via interaction with the C-terminus of...

  • Review
  • Open Access
739 Views
13 Pages

20 August 2026

During protein synthesis, ribosome stalling, collision, and aberrant elongation can lead to the accumulation of defective nascent polypeptides and compromise cellular homeostasis. To counteract such translational disturbances, eukaryotic cells have e...

(This article belongs to the Section Biochemistry and Molecular Biology)
  • Review
  • Open Access

Self-Assembled Nano-PROTACs for Targeted Protein Degradation in Cancer Therapy

  • Jiahui Dai,
  • Yang Liu,
  • Xueya Wang,
  • Xinping Zhou and ,
  • Changrui Xie and
  • Yong Jin
  • + 1 author+ 0 author

8 November 2026

Proteolysis-targeting chimeras (PROTACs) induce target protein ubiquitination and proteasomal degradation via recruitment of E3 ubiquitin ligases, enabling event-driven intervention against “undruggable” targets, drug-resistant proteins,...

(This article belongs to the Special Issue Nanomaterials for Biomedicine: Innovations and Challenges)
  • Article
  • Open Access
6 Citations
4,923 Views
24 Pages

28 October 2021

A comparison of overlapping proximity captures at the head region of the ribosomal 40S subunit (hr40S) in Saccharomyces cerevisiae from four adjacent perspectives, namely Asc1/RACK1, Rps2/uS5, Rps3/uS3, and Rps20/uS10, corroborates dynamic co-localiz...

(This article belongs to the Special Issue From Affinity to Proximity to Interaction: Mass Spectrometry Methods to Study Biomolecular Complexes)
  • Article
  • Open Access
8 Citations
3,346 Views
13 Pages

The Ralstonia solanacearum Type III Effector RipAW Targets the Immune Receptor Complex to Suppress PAMP-Triggered Immunity

  • Zhi-Mao Sun,
  • Qi Zhang,
  • Yu-Xin Feng,
  • Shuang-Xi Zhang and ,
  • Bi-Xin Bai,
  • Xue Ouyang,
  • Zhi-Liang Xiao,
  • He Meng,
  • Xiao-Ting Wang and
  • Mei-Xiang Zhang
  • + 7 authors+ 2 authors

22 December 2023

Bacterial wilt, caused by Ralstonia solanacearum, one of the most destructive phytopathogens, leads to significant annual crop yield losses. Type III effectors (T3Es) mainly contribute to the virulence of R. solanacearum, usually by targeting immune-...

(This article belongs to the Special Issue Advances of Plants-Pathogen Interaction 2023)
  • Article
  • Open Access
8 Citations
3,198 Views
12 Pages

Alpha-Synuclein Interaction with UBL3 Is Upregulated by Microsomal Glutathione S-Transferase 3, Leading to Increased Extracellular Transport of the Alpha-Synuclein under Oxidative Stress

  • Jing Yan,
  • Tomoaki Kahyo,
  • Hengsen Zhang,
  • Yashuang Ping and ,
  • Chi Zhang,
  • Shuyun Jiang,
  • Qianqing Ji,
  • Rafia Ferdous,
  • Md. Shoriful Islam and
  • Mitsutoshi Setou
  • + 10 authors+ 5 authors

Aberrant aggregation of misfolded alpha-synuclein (α-syn), a major pathological hallmark of related neurodegenerative diseases such as Parkinson’s disease (PD), can translocate between cells. Ubiquitin-like 3 (UBL3) is a membrane-anchored...

(This article belongs to the Special Issue Synucleins in Neurodegeneration)
  • Article
  • Open Access
13 Citations
5,535 Views
16 Pages

UBL3 Interacts with Alpha-Synuclein in Cells and the Interaction Is Downregulated by the EGFR Pathway Inhibitor Osimertinib

  • Bin Chen,
  • Md. Mahmudul Hasan,
  • Hengsen Zhang,
  • Qing Zhai and ,
  • A. S. M. Waliullah,
  • Yashuang Ping,
  • Chi Zhang,
  • Soho Oyama,
  • Mst. Afsana Mimi and
  • Mitsutoshi Setou
  • + 12 authors+ 7 authors

Ubiquitin-like 3 (UBL3) acts as a post-translational modification (PTM) factor and regulates protein sorting into small extracellular vesicles (sEVs). sEVs have been reported as vectors for the pathology propagation of neurodegenerative diseases, suc...

(This article belongs to the Special Issue 10th Anniversary of Biomedicines—Translational Laboratory and Experimental Medicine for the Sake of Neurological Diseases and Mental Illnesses)
  • Article
  • Open Access
8 Citations
3,407 Views
11 Pages

UBL3 Interaction with α-Synuclein Is Downregulated by Silencing MGST3

  • Jing Yan,
  • Hengsen Zhang,
  • Yuna Tomochika,
  • Bin Chen and ,
  • Yashuang Ping,
  • Md. Shoriful Islam,
  • Shuhei Aramaki,
  • Tomohito Sato,
  • Yu Nagashima and
  • Mitsutoshi Setou
  • + 10 authors+ 5 authors

Ubiquitin-like 3 (UBL3) is a membrane-anchored protein that plays a crucial role in sorting proteins into small extracellular vesicles. Aggregations of alpha-synuclein (α-syn) are associated with the pathology of neurodegenerative diseases such...

(This article belongs to the Special Issue Mechanisms and Novel Therapeutic Approaches for Neurodegenerative Diseases)
  • Article
  • Open Access
6 Citations
3,998 Views
23 Pages

Focal Adhesion Protein Vinculin Is Required for Proper Meiotic Progression during Mouse Spermatogenesis

  • Jana Petrusová,
  • Robert Havalda,
  • Petr Flachs,
  • Tomáš Venit and ,
  • Alžběta Darášová,
  • Lenka Hůlková,
  • Martin Sztacho and
  • Pavel Hozák
  • + 3 authors+ 0 author

23 June 2022

The focal adhesion protein Vinculin (VCL) is ascribed to various cytoplasmic functions; however, its nuclear role has so far been ambiguous. We observed that VCL localizes to the nuclei of mouse primary spermatocytes undergoing first meiotic division...

(This article belongs to the Section Reproductive Cells and Development)
  • Article
  • Open Access
2 Citations
3,469 Views
15 Pages

28 January 2023

Viruses are obligate parasites that only undergo genomic replication in their host organisms. ORF3a, a newly identified non-AUG-initiated ORF encoded by members of the genus Polerovirus, is required for long-distance movement in plants. However, its...

(This article belongs to the Section Plant Science)
  • Article
  • Open Access
4 Citations
3,763 Views
14 Pages

UBL3 Interacts with PolyQ-Expanded Huntingtin Fragments and Modifies Their Intracellular Sorting

  • Soho Oyama,
  • Hengsen Zhang,
  • Rafia Ferdous,
  • Yuna Tomochika and ,
  • Bin Chen,
  • Shuyun Jiang,
  • Md. Shoriful Islam,
  • Md. Mahmudul Hasan,
  • Qing Zhai and
  • Mitsutoshi Setou
  • + 15 authors+ 10 authors

22 October 2024

Background/Objectives: UBL3 (Ubiquitin-like 3) is a protein that plays a crucial role in post-translational modifications, particularly in regulating protein transport within small extracellular vesicles. While previous research has predominantly foc...

(This article belongs to the Special Issue New Insights into Genetic Neurological Diseases)
  • Review
  • Open Access
39 Citations
5,899 Views
30 Pages

Recent Advances in Nanomedicine: Cutting-Edge Research on Nano-PROTAC Delivery Systems for Cancer Therapy

  • Xiaoqing Wu,
  • Yueli Shu,
  • Yao Zheng,
  • Peichuan Zhang and ,
  • Hanwen Cong,
  • Yingpei Zou,
  • Hao Cai and
  • Zhengyu Zha
  • + 3 authors+ 0 author

Proteolysis-targeting chimeras (PROTACs) selectively degrade target proteins by recruiting intracellular E3 ubiquitin ligases, overcoming the limitations of traditional small-molecule inhibitors that merely block protein function. This approach has g...

(This article belongs to the Special Issue Prodrug Strategies for Enhancing Drug Stability and Pharmacokinetics)
  • Article
  • Open Access
1 Citations
1,050 Views
18 Pages

ZmPRN1 Negatively Regulates Salt Stress Tolerance by Modulating ROS Homeostasis in Maize (Zea mays L.)

  • Lei Ma,
  • Wenzong Li,
  • Ke Zhang,
  • Qingyun Zhang and ,
  • Hua Xu,
  • Baobao Wang,
  • Lei Wang and
  • Junjie Zou
  • + 3 authors+ 0 author

21 May 2026

Soil salinization is a major abiotic stress limiting maize (Zea mays L.) growth and productivity worldwide. Recently, many genes involved in salt stress have been identified. However, the molecular mechanisms underlying salt tolerance in maize remain...

(This article belongs to the Special Issue Functional Genomics and Molecular Breeding of Crops—3rd Edition)
  • Article
  • Open Access
3 Citations
3,427 Views
14 Pages

The Prognostic Role of Candidate Serum Biomarkers in the Post-Acute and Chronic Phases of Disorder of Consciousness: A Preliminary Study

  • Rita Formisano,
  • Mariagrazia D’Ippolito,
  • Marco Giustini,
  • Sheila Catani and ,
  • Stefania Mondello,
  • Iliana Piccolino,
  • Filomena Iannuzzi,
  • Kevin K. Wang and
  • Ronald L. Hayes
  • + 4 authors+ 0 author

29 February 2024

Introduction: Serum biomarkers, such as Neurofilament Light (NF-L), Glial Fibrillary Acidic Protein (GFAP), Ubiquitin C-terminal Hydrolase (UCH-L1), and Total-tau (T-Tau) have been proposed for outcome prediction in the acute phase of severe traumati...

(This article belongs to the Special Issue Biomarkers Identification for Neurological Diseases and Neurorehabilitation)