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35 Results Found

  • Article
  • Open Access
11 Citations
4,424 Views
11 Pages

23 December 2022

Reliable diagnostics are necessary to identify influenza infections, and coronavirus disease 2019 (COVID-19) highlights the need to develop highly specific and sensitive viral detection methods to distinguish severe acute respiratory syndrome coronav...

  • Article
  • Open Access
12 Citations
5,742 Views
15 Pages

Loop-mediated isothermal amplification (LAMP) is the most popular technology for point-of-care testing applications due its rapid, sensitive and specific detection with simple instrumentation compared to PCR-based methods. Many systems for reading th...

  • Review
  • Open Access
22 Citations
5,819 Views
24 Pages

Copy Number Variation and Rearrangements Assessment in Cancer: Comparison of Droplet Digital PCR with the Current Approaches

  • Vincenza Ylenia Cusenza,
  • Alessandra Bisagni,
  • Monia Rinaldini,
  • Chiara Cattani and
  • Raffaele Frazzi

The cytogenetic and molecular assessment of deletions, amplifications and rearrangements are key aspects in the diagnosis and therapy of cancer. Not only the initial evaluation and classification of the disease, but also the follow-up of the tumor re...

  • Review
  • Open Access
19 Citations
6,764 Views
28 Pages

Multiplexing LAMP Assays: A Methodological Review and Diagnostic Application

  • Beatriz Crego-Vicente,
  • Manuel Diego del Olmo,
  • Antonio Muro and
  • Pedro Fernández-Soto

The loop-mediated isothermal amplification (LAMP) technique is a great alternative to PCR-based methods, as it is fast, easy to use and works with high sensitivity and specificity without the need for expensive instruments. However, one of the limita...

  • Article
  • Open Access
3 Citations
2,140 Views
15 Pages

31 July 2023

Recent advances in molecular technologies have provided various assay strategies for monitoring biomarkers, such as miRNAs for early detection of various diseases and cancers. However, there is still an urgent unmet need to develop practical and accu...

  • Article
  • Open Access
213 Citations
22,653 Views
32 Pages

Use of the MLPA Assay in the Molecular Diagnosis of Gene Copy Number Alterations in Human Genetic Diseases

  • Liborio Stuppia,
  • Ivana Antonucci,
  • Giandomenico Palka and
  • Valentina Gatta

8 March 2012

Multiplex Ligation-dependent Probe Amplification (MLPA) assay is a recently developed technique able to evidence variations in the copy number of several human genes. Due to this ability, MLPA can be used in the molecular diagnosis of several genetic...

  • Article
  • Open Access
1 Citations
1,690 Views
19 Pages

19 September 2024

Loop-mediated isothermal amplification (LAMP) is a cost-effective, rapid, and highly specific method of replicating nucleic acids. Adding multiple targets into a single LAMP assay to create a multiplex format is highly desirable for clinical applicat...

  • Review
  • Open Access
3 Citations
1,391 Views
18 Pages

Molecular Diagnosis of Medical Viruses

  • Rodney M. Ratcliff,
  • Grace Chang,
  • TuckWeng Kok and
  • Theo P. Sloots

The diagnosis of infectious diseases has been revolutionized by the development of molecular techniques, foremost with the applications of the polymerase chain reaction (PCR). The achievable high sensitivity and ease with which the method can be used...

  • Article
  • Open Access
12 Citations
5,977 Views
11 Pages

Copy Number Analysis of 24 Oncogenes: MDM4 Identified as a Putative Marker for Low Recurrence Risk in Non Muscle Invasive Bladder Cancer

  • Samanta Salvi,
  • Daniele Calistri,
  • Giorgia Gurioli,
  • Elisa Carretta,
  • Luigi Serra,
  • Roberta Gunelli,
  • Wainer Zoli and
  • Valentina Casadio

14 July 2014

Patients with non-muscle invasive bladder cancer (NMIBC) generally have a high risk of relapsing locally after primary tumor resection. The search for new predictive markers of local recurrence thus represents an important goal for the management of...

  • Article
  • Open Access
2 Citations
1,951 Views
14 Pages

Development of Multiplex qPCR Method for Accurate Detection of Enzyme-Producing Psychrotrophic Bacteria

  • Kidane Yalew,
  • Shuwen Zhang,
  • Solomon Gebreyowhans,
  • Ning Xie,
  • Yunna Wang,
  • Jiaping Lv,
  • Xu Li and
  • Xiaoyang Pang

3 June 2025

Microbial detection in milk is crucial for food safety and quality, as beneficial and harmful microorganisms can affect consumer health and dairy product integrity. Identifying and quantifying these microorganisms helps prevent contamination and spoi...

  • Review
  • Open Access
24 Citations
7,507 Views
47 Pages

Progress in the Optical Sensing of Cardiac Biomarkers

  • Cristina Polonschii,
  • Monica Potara,
  • Madalina Iancu,
  • Sorin David,
  • Roberta Maria Banciu,
  • Alina Vasilescu and
  • Simion Astilean

7 June 2023

Biomarkers play key roles in the diagnosis, risk assessment, treatment and supervision of cardiovascular diseases (CVD). Optical biosensors and assays are valuable analytical tools answering the need for fast and reliable measurements of biomarker le...

  • Review
  • Open Access
2 Citations
5,514 Views
31 Pages

Advancements in LAMP-Based Diagnostics: Emerging Techniques and Applications in Viral Detection with a Focus on Herpesviruses in Transplant Patient Management

  • Ana Cláudia Martins Braga Gomes Torres,
  • Carolina Mathias,
  • Suelen Cristina Soares Baal,
  • Ana Flávia Kohler,
  • Mylena Lemes Cunha and
  • Lucas Blanes

26 October 2024

Loop-mediated isothermal amplification (LAMP) is a highly effective molecular diagnostic technique, particularly advantageous for point-of-care (POC) settings. In recent years, LAMP has expanded to include various adaptations such as DARQ-LAMP, QUASR...

  • Article
  • Open Access
4 Citations
2,800 Views
10 Pages

RET Copy Number Alteration in Medullary Thyroid Cancer Is a Rare Event Correlated with RET Somatic Mutations and High Allelic Frequency

  • Teresa Ramone,
  • Chiara Mulè,
  • Raffaele Ciampi,
  • Valeria Bottici,
  • Virginia Cappagli,
  • Alessandro Prete,
  • Antonio Matrone,
  • Paolo Piaggi,
  • Liborio Torregrossa and
  • Cristina Romei
  • + 2 authors

29 December 2020

Copy number variations (CNV) of the RET gene have been described in 30% of Medullary Thyroid Cancer (MTC), but no information is available about their role in this tumor. This study was designed to clarify RET gene CNV prevalence and their potential...

  • Article
  • Open Access
14 Citations
6,273 Views
13 Pages

Advanced Multiplex Loop Mediated Isothermal Amplification (mLAMP) Combined with Lateral Flow Detection (LFD) for Rapid Detection of Two Prevalent Malaria Species in India and Melting Curve Analysis

  • Supriya Sharma,
  • Sandeep Kumar,
  • Md Zohaib Ahmed,
  • Nitin Bhardwaj,
  • Jaskirat Singh,
  • Sarita Kumari,
  • Deepali Savargaonkar,
  • Anupkumar R. Anvikar and
  • Jyoti Das

Isothermal techniques with lateral flow detection have emerged as a point of care (POC) technique for malaria, a major parasitic disease in tropical countries such as India. Plasmodium falciparum and Plasmodium vivax are the two most prevalent malari...

  • Review
  • Open Access
71 Citations
6,941 Views
20 Pages

23 September 2019

This work reviews the field of DNA biosensors based on electrochemical determination of nanoparticle labels. These labeling platforms contain the attachment of metal nanoparticles (NPs) or quantum dots (QDs) on the target DNA or on a biorecognition r...

  • Communication
  • Open Access
3 Citations
2,945 Views
10 Pages

10 October 2023

X-linked recessive ichthyosis (XLI) is clinically characterized by dark brown, widespread dryness with polygonal scales. We describe the identification of STS and PUDP deletions using targeted panel sequencing combined with copy-number variation (CNV...

  • Article
  • Open Access
1,618 Views
18 Pages

Pitfalls When Determining HNA-1 Genotypes and Finding Novel Alleles

  • Kirstine Kløve-Mogensen,
  • Tom Browne,
  • Thure Mors Haunstrup and
  • Rudi Steffensen

22 August 2024

Genetic variation in the FCGR3B gene is responsible for different variants of human neutrophil antigen 1 (HNA-1). Laboratory techniques currently utilized for routine HNA-1 genotyping, predominantly PCR-sequence-specific primer (PCR-SSP) and PCR-sequ...

  • Article
  • Open Access
18 Citations
5,286 Views
16 Pages

Male Breast Cancer: Results of the Application of Multigene Panel Testing to an Italian Cohort of Patients

  • Gianluca Tedaldi,
  • Michela Tebaldi,
  • Valentina Zampiga,
  • Ilaria Cangini,
  • Francesca Pirini,
  • Elisa Ferracci,
  • Rita Danesi,
  • Valentina Arcangeli,
  • Mila Ravegnani and
  • Daniele Calistri
  • + 3 authors

Male breast cancer (MBC) is a rare tumor, accounting for less than 1% of all breast cancers. In MBC, genetic predisposition plays an important role; however, only a few studies have investigated in depth the role of genes other than BRCA1 and BRCA2....

  • Article
  • Open Access
2 Citations
3,214 Views
7 Pages

Detection of Del/Dup Inside SHOX/PAR1 Region in Children and Young Adults with Idiopathic Short Stature

  • Jera Stritar,
  • Lana Stavber,
  • Maja Ficko,
  • Primož Kotnik,
  • Tadej Battelino,
  • Katarina Trebušak Podkrajšek and
  • Tinka Hovnik

29 September 2021

Short stature is a common growth disorder defined as a body height two standard deviations (SD) or more below the mean for a given age, gender, and population. A large part of the cases remains unexplained and is referred to as having idiopathic shor...

  • Article
  • Open Access
53 Citations
11,907 Views
19 Pages

Highly Sensitive Bacteria Quantification Using Immunomagnetic Separation and Electrochemical Detection of Guanine-Labeled Secondary Beads

  • Harikrishnan Jayamohan,
  • Bruce K. Gale,
  • Bj Minson,
  • Christopher J. Lambert,
  • Neil Gordon and
  • Himanshu J. Sant

22 May 2015

In this paper, we report the ultra-sensitive indirect electrochemical detection of E. coli O157:H7 using antibody functionalized primary (magnetic) beads for capture and polyguanine (polyG) oligonucleotide functionalized secondary (polystyrene) beads...

  • Article
  • Open Access
7 Citations
2,253 Views
12 Pages

Effects of Somatic Methylation in Colonic Polyps on Risk of Developing Metachronous Advanced Colorectal Lesions

  • Oscar Murcia,
  • Alejandro Martínez-Roca,
  • Miriam Juárez,
  • Mar Giner-Calabuig,
  • Miren Alustiza,
  • Cristina Mira,
  • Carolina Mangas-Sanjuan,
  • Eva Serrano,
  • Francisco Antonio Ruiz-Gómez and
  • Rodrigo Jover
  • + 6 authors

11 January 2021

The utility of molecular markers for predicting the risk of metachronous advanced colorectal lesions (MACLs) remains poorly investigated. We examined the relationship between somatic hypermethylation in polyps at baseline and the risk of developing M...

  • Article
  • Open Access
8 Citations
4,658 Views
14 Pages

Cas9-Mediated Nanopore Sequencing Enables Precise Characterization of Structural Variants in CCM Genes

  • Dariush Skowronek,
  • Robin A. Pilz,
  • Loisa Bonde,
  • Ole J. Schamuhn,
  • Janne L. Feldmann,
  • Sabine Hoffjan,
  • Christiane D. Much,
  • Ute Felbor and
  • Matthias Rath

9 December 2022

Deletions in the CCM1, CCM2, and CCM3 genes are a common cause of familial cerebral cavernous malformations (CCMs). In current molecular genetic laboratories, targeted next-generation sequencing or multiplex ligation-dependent probe amplification are...

  • Article
  • Open Access
3 Citations
2,833 Views
11 Pages

Identification of an NF1 Microdeletion with Optical Genome Mapping

  • Gergely Büki,
  • Anna Bekő,
  • Csaba Bödör,
  • Péter Urbán,
  • Krisztina Németh,
  • Kinga Hadzsiev,
  • György Fekete,
  • Hildegard Kehrer-Sawatzki and
  • Judit Bene

1 September 2023

Neurofibromatosis type 1 (NF1) is a clinically heterogeneous neurocutaneous disorder inherited in autosomal dominant manner. Approximately 5–10% of the cases are caused by NF1 microdeletions involving the NF1 gene and its flanking regions. Micr...

  • Article
  • Open Access
17 Citations
4,853 Views
21 Pages

Hybrid Minigene Assay: An Efficient Tool to Characterize mRNA Splicing Profiles of NF1 Variants

  • Valeria Morbidoni,
  • Elisa Baschiera,
  • Monica Forzan,
  • Valentina Fumini,
  • Dario Seif Ali,
  • Gianpietro Giorgi,
  • Lisa Buson,
  • Maria Andrea Desbats,
  • Matteo Cassina and
  • Eva Trevisson
  • + 2 authors

27 February 2021

Neurofibromatosis type 1 (NF1) is caused by heterozygous loss of function mutations in the NF1 gene. Although patients are diagnosed according to clinical criteria and few genotype-phenotype correlations are known, molecular analysis remains importan...

  • Article
  • Open Access
27 Citations
5,366 Views
24 Pages

Food poisoning continue to be a threat in the food industry showing a need to improve the detection of the pathogen responsible for the hospitalization cases and death. DNA-based techniques represent a real advantage and allow the detection of severa...

  • Article
  • Open Access
2 Citations
2,159 Views
18 Pages

Matched Paired Primary and Recurrent Meningiomas Points to Cell-Death Program Contributions to Genomic and Epigenomic Instability along Tumor Progression

  • Teresa San-Miguel,
  • Javier Megías,
  • Daniel Monleón,
  • Lara Navarro,
  • Lisandra Muñoz-Hidalgo,
  • Carmina Montoliu,
  • Marina Meri,
  • Pedro Roldán,
  • Miguel Cerdá-Nicolás and
  • Concha López-Ginés

19 August 2022

Meningioma (MN) is an important cause of disability, and predictive tools for estimating the risk of recurrence are still scarce. The need for objective and cost-effective techniques addressed to this purpose is well known. In this study, we present...

  • Article
  • Open Access
8 Citations
4,296 Views
13 Pages

Integrated Genomic Analysis of Chromosomal Alterations and Mutations in B-Cell Acute Lymphoblastic Leukemia Reveals Distinct Genetic Profiles at Relapse

  • Maribel Forero-Castro,
  • Adrián Montaño,
  • Cristina Robledo,
  • Alfonso García de Coca,
  • José Luis Fuster,
  • Natalia de las Heras,
  • José Antonio Queizán,
  • María Hernández-Sánchez,
  • Luis A. Corchete-Sánchez and
  • Jesús M. Hernández-Rivas
  • + 4 authors

The clonal basis of relapse in B-cell precursor acute lymphoblastic leukemia (BCP-ALL) is complex and not fully understood. Next-generation sequencing (NGS), array comparative genomic hybridization (aCGH), and multiplex ligation-dependent probe ampli...

  • Article
  • Open Access
13 Citations
4,740 Views
13 Pages

Comparison of Methods for Testing Mismatch Repair Status in Endometrial Cancer

  • Marta Mendiola,
  • Victoria Heredia-Soto,
  • Ignacio Ruz-Caracuel,
  • Amparo Baillo,
  • Jorge Luis Ramon-Patino,
  • Francisco Javier Escudero,
  • Maria Miguel,
  • Alberto Pelaez-Garcia,
  • Alicia Hernandez and
  • Andres Redondo
  • + 2 authors

23 September 2023

Approximately 20–30% of endometrial carcinomas (EC) are characterized by mismatch repair (MMR) deficiency (dMMR) or microsatellite instability (MSI), and their testing has become part of the routine diagnosis. The aim of this study was to estab...

  • Article
  • Open Access
3 Citations
2,802 Views
17 Pages

KIT Expression Is Regulated by DNA Methylation in Uveal Melanoma Tumors

  • Viera Horvathova Kajabova,
  • Andrea Soltysova,
  • Lucia Demkova,
  • Paulina Plesnikova,
  • Darina Lyskova,
  • Alena Furdova,
  • Pavel Babal and
  • Bozena Smolkova

4 October 2021

Uveal melanoma (UM) is an ocular tumor with a dismal prognosis. Despite the availability of precise molecular and cytogenetic techniques, clinicopathologic features with limited accuracy are widely used to predict metastatic potential. In 51 UM tissu...

  • Article
  • Open Access
6 Citations
3,014 Views
15 Pages

Whole-Genome Sequencing Identified New Structural Variations in the DMD Gene That Cause Duchenne Muscular Dystrophy in Two Girls

  • Natalie Pluta,
  • Arpad von Moers,
  • Astrid Pechmann,
  • Werner Stenzel,
  • Hans-Hilmar Goebel,
  • David Atlan,
  • Beat Wolf,
  • Indrajit Nanda,
  • Ann-Kathrin Zaum and
  • Simone Rost

1 September 2023

Dystrophinopathies are the most common muscle diseases, especially in men. In women, on the other hand, a manifestation of Duchenne muscular dystrophy is rare due to X-chromosomal inheritance. We present two young girls with severe muscle weakness, m...

  • Article
  • Open Access
1,630 Views
17 Pages

Multiplex Ligation Probe Amplification and Sanger Sequencing: Light and Shade in the Diagnosis of Lysosomal Storage Disorders

  • Martina Vinci,
  • Carmela Zizzo,
  • Marta Moschetti,
  • Miriam Giacomarra,
  • Monia Anania,
  • Giulia Duro,
  • Tiziana Di Chiara,
  • Maria Russo,
  • Elisa Messina and
  • Giovanni Duro
  • + 1 author

Background: Multiplex Ligation Probe Amplification (MLPA) is a widely used technique for the diagnosis of lysosomal storage diseases (LSDs). It analyses over 40 DNA sequences in a single reaction, identifying copy number variations and large deletion...

  • Article
  • Open Access
4 Citations
3,141 Views
19 Pages

Molecular Genetic Approach and Evaluation of Cardiovascular Events in Patients with Clinical Familial Hypercholesterolemia Phenotype from Romania

  • Cristiana-Elena Vlad,
  • Liliana Georgeta Foia,
  • Roxana Popescu,
  • Ioana Popa,
  • Ruxandra Aanicai,
  • Delia Reurean-Pintilei,
  • Vasilica Toma,
  • Laura Florea,
  • Mehmet Kanbay and
  • Adrian Covic

31 March 2021

This study identifies the genetic background of familial hypercholesterolemia (FH) patients in Romania and evaluates the association between mutations and cardiovascular events. We performed a prospective observational study of 61 patients with a cli...

  • Article
  • Open Access
3 Citations
2,612 Views
18 Pages

9 August 2023

Chronic lymphocytic leukemia (CLL) is known for its wide-ranging clinical and genetic diversity. The study aimed to assess the associations between copy number variations (CNVs) and various biological and clinical features, as well as the survival ra...

  • Article
  • Open Access
1,300 Views
15 Pages

Towards Precision Medicine in Obesity: Genetic Copy Number Variations Profiling Linked to Specific Metabolic Dysregulation Patterns

  • Ivona Mitu,
  • Iuliu Ivanov,
  • Loredana Dragoș,
  • Elena Nisioi,
  • Daniela-Cristina Dimitriu,
  • Larisa-Ionela Miftode,
  • Otilia Frăsinariu,
  • Laura-Mihaela Trandafir,
  • Roxana Popescu and
  • Daniela Jitaru

This study aimed to identify and analyse the copy number variations (CNVs) in the genes involved in the pathophysiology of obesity and correlate these findings with the phenotypic manifestations. Genetic screening of 59 apparently healthy individuals...

  • Article
  • Open Access
5 Citations
3,197 Views
14 Pages

Evaluation of a Four-Gene Panel for Hereditary Cancer Risk Assessment

  • Angela Secondino,
  • Flavio Starnone,
  • Iolanda Veneruso,
  • Maria Antonietta Di Tella,
  • Serena Conato,
  • Carmine De Angelis,
  • Sabino De Placido and
  • Valeria D’Argenio

13 April 2022

BRCA1/2 are tumor suppressor genes involved in DNA double-strand break repair. They are the most penetrant genes for hereditary breast and ovarian cancers, but pathogenic variants in these two genes can be identified only in a fraction of hereditary...