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44 Results Found

  • Article
  • Open Access
8 Citations
2,869 Views
11 Pages

As a major apurinic/apyrimidinic endonuclease and a redox signaling protein in human cells, APE1 plays a crucial role in cellular function and survival. The relationship between alterations of APE1 expression and subcellular localization and the init...

  • Review
  • Open Access
3 Citations
2,974 Views
30 Pages

Apurinic/apyrimidinic endonuclease 1 (APEX1) serves as a potent regulatory factor in innate immunity, exhibiting both redox and endonuclease activities. Its redox function enables the regulation of transcription factors such as NF-κB or STAT3,...

  • Article
  • Open Access
967 Views
13 Pages

Label-Free and Ultrasensitive APE1 Detection Based on Hybridization Chain Reaction Combined with G-Quadruplex

  • Yarong Zhang,
  • Hongyan Ma,
  • Zhenyao Gao,
  • Miao Li,
  • Fan Yang,
  • Lingbo Sun and
  • Yuecheng Zhang

3 September 2025

Apurinic/apyrimidinic endonuclease 1 (APE1) selectively cleaves the apurinic/apyrimidinic site (AP site) in DNA, playing a critical role in base excision repair and genomic stability maintenance. Aberrant APE1 expression has been linked to numerous d...

  • Article
  • Open Access
4 Citations
3,449 Views
16 Pages

A New Drug Discovery Platform: Application to DNA Polymerase Eta and Apurinic/Apyrimidinic Endonuclease 1

  • Debanu Das,
  • Matthew A. J. Duncton,
  • Taxiarchis M. Georgiadis,
  • Patricia Pellicena,
  • Jennifer Clark,
  • Robert W. Sobol,
  • Millie M. Georgiadis,
  • John King-Underwood,
  • David V. Jobes and
  • Caleb Chang
  • + 3 authors

23 November 2023

The ability to quickly discover reliable hits from screening and rapidly convert them into lead compounds, which can be verified in functional assays, is central to drug discovery. The expedited validation of novel targets and the identification of m...

  • Review
  • Open Access
20 Citations
16,224 Views
19 Pages

Glucagon-like peptide-1 (GLP-1) is originally found as a metabolic hormone (incretin) that is able to regulate blood-glucose levels via promoting synthesis and secretion of insulin. GLP-1 and many analogues are approved for treatment of type II diabe...

  • Review
  • Open Access
25 Citations
7,215 Views
17 Pages

APE1 (DNA (apurinic/apyrimidinic site) endonuclease 1) is a key enzyme of one of the major DNA repair routes, the BER (base excision repair) pathway. APE1 fulfils additional functions, acting as a redox regulator of transcription factors and taking p...

  • Article
  • Open Access
5 Citations
2,846 Views
12 Pages

27 May 2024

A fluorogenic aptamer (FA)-based hybridization chain reaction (HCR) could provide a sensitive and label-free signal amplification method for imaging molecules in living cells. However, existing FA-HCR methods usually face some problems, such as a com...

  • Review
  • Open Access
9 Citations
4,501 Views
14 Pages

APE1/Ref-1 as a Therapeutic Target for Inflammatory Bowel Disease

  • Lauren Sahakian,
  • Ainsley M. Robinson,
  • Linda Sahakian,
  • Rhian Stavely,
  • Mark R. Kelley and
  • Kulmira Nurgali

24 October 2023

Inflammatory bowel disease (IBD) is characterized by chronic relapsing inflammation of the gastrointestinal tract. The prevalence of IBD is increasing with approximately 4.9 million cases reported worldwide. Current therapies are limited due to the s...

  • Article
  • Open Access
1,926 Views
13 Pages

Nanoscale Interaction of Endonuclease APE1 with DNA

  • Sridhar Vemulapalli,
  • Mohtadin Hashemi,
  • Yingling Chen,
  • Suravi Pramanik,
  • Kishor K. Bhakat and
  • Yuri L. Lyubchenko

Apurinic/apyrimidinic endonuclease 1 (APE1) is involved in DNA repair and transcriptional regulation mechanisms. This multifunctional activity of APE1 should be supported by specific structural properties of APE1 that have not yet been elucidated. He...

  • Article
  • Open Access
31 Citations
5,076 Views
18 Pages

Impact of the APE1 Redox Function Inhibitor E3330 in Non-Small Cell Lung Cancer Cells Exposed to Cisplatin: Increased Cytotoxicity and Impairment of Cell Migration and Invasion

  • Rita Manguinhas,
  • Ana S. Fernandes,
  • João G. Costa,
  • Nuno Saraiva,
  • Sérgio P. Camões,
  • Nuno Gil,
  • Rafael Rosell,
  • Matilde Castro,
  • Joana P. Miranda and
  • Nuno G. Oliveira

Elevated expression levels of the apurinic/apyrimidinic endonuclease 1 (APE1) have been correlated with the more aggressive phenotypes and poor prognosis of non-small cell lung cancer (NSCLC). This study aimed to assess the impact of the inhibition o...

  • Article
  • Open Access
15 Citations
4,254 Views
15 Pages

Antileukemic Efficacy in Vitro of Talazoparib and APE1 Inhibitor III Combined with Decitabine in Myeloid Malignancies

  • Vanessa Kohl,
  • Johanna Flach,
  • Nicole Naumann,
  • Susanne Brendel,
  • Helga Kleiner,
  • Christel Weiss,
  • Wolfgang Seifarth,
  • Daniel Nowak,
  • Wolf-Karsten Hofmann and
  • Alice Fabarius
  • + 1 author

3 October 2019

Malignant hematopoietic cells of myelodysplastic syndromes (MDS)/chronic myelomonocytic leukemias (CMML) and acute myeloid leukemias (AML) may be vulnerable to inhibition of poly(ADP ribose) polymerase 1/2 (PARP1/2) and apurinic/apyrimidinic endonucl...

  • Review
  • Open Access
24 Citations
8,017 Views
27 Pages

Inhibition of APE1/Ref-1 for Neovascular Eye Diseases: From Biology to Therapy

  • Gabriella D. Hartman,
  • Nathan A. Lambert-Cheatham,
  • Mark R. Kelley and
  • Timothy W. Corson

24 September 2021

Proliferative diabetic retinopathy (PDR), neovascular age-related macular degeneration (nvAMD), retinopathy of prematurity (ROP) and other eye diseases are characterized by retinal and/or choroidal neovascularization, ultimately causing vision loss i...

  • Article
  • Open Access
3 Citations
1,832 Views
14 Pages

27 November 2024

Endogenous DNA damage occurs throughout the cell cycle, with cells responding differently at various stages. The base excision repair (BER) pathway predominantly repairs damaged bases in the genome. While extensively studied in interphase cells, it i...

  • Article
  • Open Access
15 Citations
3,441 Views
13 Pages

APEX1 Expression as a Potential Diagnostic Biomarker of Clear Cell Renal Cell Carcinoma and Hepatobiliary Carcinomas

  • Ji-Myung Kim,
  • Min-Kyung Yeo,
  • Jae Sung Lim,
  • In-Sang Song,
  • Kwangsik Chun and
  • Kyung-Hee Kim

1 August 2019

Apurinic/apyrimidinic endonuclease 1/redox effector factor 1 (APEX1) has been known to play key roles in DNA repair, the regulation of diverse transcriptional activity, and cellular responses to redox activity. This study aimed to examine serum APEX1...

  • Article
  • Open Access
11 Citations
3,344 Views
14 Pages

Cleavage of the APE1 N-Terminal Domain in Acute Myeloid Leukemia Cells Is Associated with Proteasomal Activity

  • Lisa Lirussi,
  • Giulia Antoniali,
  • Pasqualina Liana Scognamiglio,
  • Daniela Marasco,
  • Emiliano Dalla,
  • Chiara D’Ambrosio,
  • Simona Arena,
  • Andrea Scaloni and
  • Gianluca Tell

31 March 2020

Apurinic/apyrimidinic endonuclease 1 (APE1), the main mammalian AP-endonuclease for the resolution of DNA damages through the base excision repair (BER) pathway, acts as a multifunctional protein in different key cellular processes. The signals to en...

  • Article
  • Open Access
1,065 Views
18 Pages

15 November 2024

Apurinic/apyrimidinic endonuclease 1 (APE1) is responsible for the hydrolysis of the phosphodiester bond on the 5′ side of an apurinic/apyrimidinic site during base excision repair. Moreover, in DNA, this enzyme can recognize nucleotides contai...

  • Review
  • Open Access
4 Citations
3,751 Views
17 Pages

DNA Nanotechnology-Empowered Fluorescence Imaging of APE1 Activity

  • Hui He,
  • Xiaojun Liu,
  • Yuchen Wu,
  • Lanlin Qi,
  • Jin Huang,
  • Yan Zhou,
  • Jiahao Zeng,
  • Kemin Wang and
  • Xiaoxiao He

17 August 2023

Apurinic/apyrimidinic endonuclease 1 (APE1), also known as redox factor-1 (Ref-1), is a multifunctional protein that exists widely in living organisms. It can specifically recognize and cleave the DNA in apurinic/apyrimidinic (AP) sites in the base e...

  • Article
  • Open Access
45 Citations
12,908 Views
35 Pages

Design, Synthesis and Structure-activity Studies of Rhodanine Derivatives as HIV-1 Integrase Inhibitors

  • Kavya Ramkumar,
  • Vladimir N. Yarovenko,
  • Alexandra S. Nikitina,
  • Igor V. Zavarzin,
  • Mikhail M. Krayushkin,
  • Leonid V. Kovalenko,
  • Adrian Esqueda,
  • Srinivas Odde and
  • Nouri Neamati

1 June 2010

Raltegravir was the first HIV-1 integrase inhibitor that gained FDA approval for use in the treatment of HIV-1 infection. Because of the emergence of IN inhibitor-resistant viral strains, there is a need to identify innovative second-generation IN in...

  • Article
  • Open Access
3 Citations
3,683 Views
22 Pages

Base Excision Repair AP-Endonucleases-Like Genes Modulate DNA Damage Response and Virulence of the Human Pathogen Cryptococcus neoformans

  • Rayssa Karla de Medeiros Oliveira,
  • Fabián Andrés Hurtado,
  • Pedro Henrique Gomes,
  • Luiza Lassi Puglia,
  • Fernanda Fonsêca Ferreira,
  • Kunal Ranjan,
  • Patrícia Albuquerque,
  • Márcio José Poças-Fonseca,
  • Ildinete Silva-Pereira and
  • Larissa Fernandes

12 February 2021

Pathogenic microbes are exposed to a number of potential DNA-damaging stimuli during interaction with the host immune system. Microbial survival in this situation depends on a fine balance between the maintenance of DNA integrity and the adaptability...

  • Review
  • Open Access
1 Citations
2,555 Views
24 Pages

Protein–Protein Interactions in Base Excision Repair

  • Govardhan Rathnaiah and
  • Joann B. Sweasy

18 June 2025

The Base Excision Repair (BER) pathway involves a highly coordinated series of protein–protein interactions that facilitate the recognition, excision, and repair of damaged bases. Key enzymes such as DNA glycosylases, apurinic/apyrimidinic endo...

  • Article
  • Open Access
15 Citations
4,310 Views
18 Pages

Human apurinic/apyrimidinic endonuclease 1 (APE1) has multiple functions in base excision DNA repair (BER) and other cellular processes. Its eukaryote-specific N-terminal extension plays diverse regulatory roles in interaction with different partners...

  • Article
  • Open Access
8 Citations
2,161 Views
14 Pages

The Impact of Human DNA Glycosylases on the Activity of DNA Polymerase β toward Various Base Excision Repair Intermediates

  • Artemiy S. Bakman,
  • Stanislav S. Boichenko,
  • Aleksandra A. Kuznetsova,
  • Alexander A. Ishchenko,
  • Murat Saparbaev and
  • Nikita A. Kuznetsov

Base excision repair (BER) is one of the important systems for the maintenance of genome stability via repair of DNA lesions. BER is a multistep process involving a number of enzymes, including damage-specific DNA glycosylases, apurinic/apyrimidinic...

  • Article
  • Open Access
3 Citations
1,421 Views
20 Pages

Inner Amino Acid Contacts Are Key Factors of Multistage Structural Rearrangements of DNA and Affect Substrate Specificity of Apurinic/Apyrimidinic Endonuclease APE1

  • Anatoly A. Bulygin,
  • Victoria N. Syryamina,
  • Aleksandra A. Kuznetsova,
  • Darya S. Novopashina,
  • Sergei A. Dzuba and
  • Nikita A. Kuznetsov

Apurinic/apyrimidinic endonuclease 1 (APE1) is one of the most important enzymes in base excision repair. Studies on this enzyme have been conducted for a long time, but some aspects of its activity remain poorly understood. One such question concern...

  • Article
  • Open Access
375 Views
16 Pages

Mitochondrial DNA Damage and Histological Features in Liver Tissue of Azoxymethane-Treated Apex1 Haploinsufficient Mice

  • Carmen M. Pérez-Pérez,
  • Adlin Rodríguez-Muñoz,
  • Gerardo G. Mackenzie,
  • Karen E. Matsukuma,
  • María R. Castro-Achi,
  • Sylvette Ayala-Peña and
  • Carlos A. Torres-Ramos

6 December 2025

Mitochondrial dysfunction and loss of mitochondrial DNA (mtDNA) integrity are increasingly recognized as key contributors to liver diseases such as cirrhosis and hepatocellular carcinoma. However, the role of mtDNA repair in maintaining mitochondrial...

  • Article
  • Open Access
6 Citations
1,951 Views
12 Pages

8 August 2023

Malignant pleural mesothelioma (MPM) is an aggressive cancer associated with asbestos exposure. MPM pathogenesis has been related both to oxidative stress, evoked by and in response to asbestos fibers exposure, and epithelial mesenchymal transition (...

  • Review
  • Open Access
6 Citations
3,250 Views
16 Pages

11 June 2020

Monocytes, which play a crucial role in the immune system, are characterized by an enormous sensitivity to oxidative stress. As they lack four key proteins responsible for DNA damage response (DDR) pathways, they are especially prone to reactive oxyg...

  • Article
  • Open Access
18 Citations
3,801 Views
18 Pages

ROS-Induced Mitochondrial Dysfunction in CD4 T Cells from ART-Controlled People Living with HIV

  • Madison Schank,
  • Juan Zhao,
  • Ling Wang,
  • Lam Ngoc Thao Nguyen,
  • Yi Zhang,
  • Xiao Y. Wu,
  • Jinyu Zhang,
  • Yong Jiang,
  • Shunbin Ning and
  • Mohamed El Gazzar
  • + 2 authors

26 April 2023

We have previously demonstrated mitochondrial dysfunction in aging CD4 T cells from antiretroviral therapy (ART)-controlled people living with HIV (PLWH). However, the underlying mechanisms by which CD4 T cells develop mitochondrial dysfunction in PL...

  • Article
  • Open Access
24 Citations
3,944 Views
19 Pages

Mechanisms of Resistance to Photodynamic Therapy (PDT) in Vulvar Cancer

  • Beata Joanna Mossakowska,
  • Somayeh Shahmoradi Ghahe,
  • Dominik Cysewski,
  • Anna Fabisiewicz,
  • Barbara Tudek and
  • Janusz Aleksander Siedlecki

Photodynamic therapy (PDT) is a valuable treatment method for vulvar intraepithelial neoplasia (VIN). It allows for the treatment of a multifocal disease with minimal tissue destruction. 5-Aminolevulinic acid (5-ALA) is the most commonly used prodrug...

  • Article
  • Open Access
8 Citations
4,587 Views
15 Pages

Identification of Novel Pathways Regulated by APE1/Ref-1 in Human Retinal Endothelial Cells

  • Mahmut Mijit,
  • Sheng Liu,
  • Kamakshi Sishtla,
  • Gabriella D. Hartman,
  • Jun Wan,
  • Timothy W. Corson and
  • Mark R. Kelley

APE1/Ref-1 (apurinic/apyrimidinic endonuclease 1, APE1 or APEX1; redox factor-1, Ref-1) is a dual-functional enzyme with crucial roles in DNA repair, reduction/oxidation (redox) signaling, and RNA processing and metabolism. The redox function of Ref-...

  • Review
  • Open Access
2 Citations
3,336 Views
18 Pages

Base excision repair (BER) is a cellular process that removes damaged bases arising from exogenous and endogenous sources including reactive oxygen species, alkylation agents, and ionizing radiation. BER is mediated by the actions of multiple protein...

  • Article
  • Open Access
18 Citations
4,888 Views
20 Pages

Impact of Helicobacter pylori Infection and Its Major Virulence Factor CagA on DNA Damage Repair

  • Eleftherios Kontizas,
  • Spyros Tastsoglou,
  • Timokratis Karamitros,
  • Yiannis Karayiannis,
  • Panagoula Kollia,
  • Artemis G. Hatzigeorgiou and
  • Dionyssios N. Sgouras

Helicobacter pylori infection induces a plethora of DNA damages. Gastric epithelial cells, in order to maintain genomic integrity, require an integrous DNA damage repair (DDR) machinery, which, however, is reported to be modulated by the infection. C...

  • Article
  • Open Access
1 Citations
2,597 Views
16 Pages

A Knockout of Poly(ADP-Ribose) Polymerase 1 in a Human Cell Line: An Influence on Base Excision Repair Reactions in Cellular Extracts

  • Svetlana N. Khodyreva,
  • Ekaterina S. Ilina,
  • Nadezhda S. Dyrkheeva,
  • Alina S. Kochetkova,
  • Alexandra A. Yamskikh,
  • Ekaterina A. Maltseva,
  • Anastasia A. Malakhova,
  • Sergey P. Medvedev,
  • Suren M. Zakian and
  • Olga I. Lavrik

6 February 2024

Base excision repair (BER) is the predominant pathway for the removal of most forms of hydrolytic, oxidative, and alkylative DNA lesions. The precise functioning of BER is achieved via the regulation of each step by regulatory/accessory proteins, wit...

  • Article
  • Open Access
2 Citations
1,621 Views
15 Pages

Gene Expression and Activity of Selected Antioxidant and DNA Repair Enzymes in the Prefrontal Cortex of Sheep as Affected by Kynurenic Acid

  • Elżbieta Marciniak,
  • Bartosz Osuch,
  • Patrycja Młotkowska,
  • Paweł Kowalczyk,
  • Katarzyna Roszkowicz-Ostrowska and
  • Tomasz Misztal

The prefrontal cortex (PCx) is involved in many higher-order cognitive processes, including decision making, reasoning, personality expression, and social cognition. These functions are associated with high energy demand and the production of harmful...

  • Article
  • Open Access
11 Citations
6,975 Views
11 Pages

Polymorphisms in DNA Repair Genes (APEX1, XPD, XRCC1 and XRCC3) and Risk of Preeclampsia in a Mexican Mestizo Population

  • Ada Sandoval-Carrillo,
  • Edna M. Méndez-Hernández,
  • Fernando Vazquez-Alaniz,
  • Marisela Aguilar-Durán,
  • Alfredo Téllez-Valencia,
  • Marcelo Barraza-Salas,
  • Francisco X. Castellanos-Juárez,
  • Osmel La Llave-León and
  • José M. Salas-Pacheco

11 March 2014

Variations in genes involved in DNA repair systems have been proposed as risk factors for the development of preeclampsia (PE). We conducted a case-control study to investigate the association of Human apurinic/apyrimidinic (AP) endonuclease (APEX1)...

  • Article
  • Open Access
1 Citations
2,100 Views
8 Pages

Kawasaki disease (KD) refers to systemic vasculitis of medium-sized vessels accompanied by fever. The multifunctional protein apurinic/apyrimidinic endonuclease-1/redox factor-1 (APE1/Ref-1) is a new biomarker for vascular inflammation. Here, we inve...

  • Article
  • Open Access
4 Citations
3,219 Views
18 Pages

DNA Base Excision Repair Intermediates Influence Duplex–Quadruplex Equilibrium

  • Mark L. Sowers,
  • James W. Conrad,
  • Bruce Chang-Gu,
  • Ellie Cherryhomes,
  • Linda C. Hackfeld and
  • Lawrence C. Sowers

18 January 2023

Although genomic DNA is predominantly duplex under physiological conditions, particular sequence motifs can favor the formation of alternative secondary structures, including the G-quadruplex. These structures can exist within gene promoters, telomer...

  • Article
  • Open Access
2 Citations
1,980 Views
22 Pages

Position-Dependent Effects of AP Sites Within an hTERT Promoter G-Quadruplex Scaffold on Quadruplex Stability and Repair Activity of the APE1 Enzyme

  • Viktoriia Yu. Savitskaya,
  • Kirill A. Novoselov,
  • Nina G. Dolinnaya,
  • Mayya V. Monakhova,
  • Viktoriia G. Snyga,
  • Evgeniia A. Diatlova,
  • Elizaveta S. Peskovatskova,
  • Victor M. Golyshev,
  • Mariia I. Kitaeva and
  • Daria A. Eroshenko
  • + 3 authors

Apurinic/apyrimidinic (AP) sites are endogenous DNA lesions widespread in human cells. Having no nucleobases, they are noncoding and promutagenic. AP site repair is generally initiated through strand incision by AP endonuclease 1 (APE1). Although AP...

  • Article
  • Open Access
20 Citations
3,739 Views
20 Pages

23 October 2019

DNA lesions are formed continuously in each living cell as a result of environmental factors, ionisation radiation, metabolic processes, etc. Most lesions are removed from the genome by the base excision repair system (BER). The activation of the BER...

  • Article
  • Open Access
3 Citations
2,269 Views
18 Pages

Copy Number Variation That Influences the Ionizing Radiation Sensitivity of Oral Squamous Cell Carcinoma

  • Tadahide Izumi,
  • Piotr Rychahou,
  • Li Chen,
  • Molly H. Smith and
  • Joseph Valentino

10 October 2023

Genome instability in cancer cells causes not only point mutations but also structural variations of the genome, including copy number variations (CNVs). It has recently been proposed that CNVs arise in cancer to adapt to a given microenvironment to...

  • Article
  • Open Access
18 Citations
3,344 Views
15 Pages

28 September 2020

Human apurinic/apyrimidinic endonuclease 1 (APE1) is known to be a critical player of the base excision repair (BER) pathway. In general, BER involves consecutive actions of DNA glycosylases, AP endonucleases, DNA polymerases, and DNA ligases. It is...

  • Article
  • Open Access
5 Citations
2,437 Views
16 Pages

12 August 2022

The simultaneous regulation of cancer cells and inflammatory immune cells in the tumor microenvironment (TME) can be an effective strategy in treating aggressive breast cancer types, such as triple-negative breast cancer (TNBC). Apurinic/apyrimidinic...

  • Article
  • Open Access
2 Citations
2,336 Views
13 Pages

Changes in the Plasma Apurinic/Apyrimidinic Endonuclease 1/Redox Factor-1(APE1/Ref-1) Level during Cancer Surgery: An Observational Study

  • Yumin Jo,
  • Yeojung Kim,
  • Eunhye Park,
  • Yuran Lee,
  • Jiyeon Kim,
  • Minwoong Kang,
  • Jaesung Lim,
  • Insang Song,
  • Chaeseong Lim and
  • Byeonghwa Jeon

21 November 2021

Background and Objectives: Propofol-based total intravenous anesthesia (TIVA) is presumed to have more favorable effects on the prognosis of patients with cancer compared with volatile inhaled anesthesia (VIA). We hypothesized that these anesthetics...

  • Review
  • Open Access
43 Citations
8,834 Views
24 Pages

21 June 2019

Several researchers have analyzed the alterations of the methionine cycle associated with liver disease to clarify the pathogenesis of human hepatocellular carcinoma (HCC) and improve the preventive and the therapeutic approaches to this tumor. Diffe...

  • Article
  • Open Access
3 Citations
3,201 Views
14 Pages

Conformational Rearrangements Regulating the DNA Repair Protein APE1

  • Nina Komaniecka,
  • Marta Porras,
  • Louis Cairn,
  • Jon Ander Santas,
  • Nerea Ferreiro,
  • Juan Carlos Penedo and
  • Sonia Bañuelos

Apurinic apyrimidinic endonuclease 1 (APE1) is a key enzyme of the Base Excision Repair (BER) pathway, which primarily manages oxidative lesions of DNA. Once the damaged base is removed, APE1 recognises the resulting abasic site and cleaves the phosp...