Journal Description
Molbank
Molbank
is an international, peer-reviewed, open access journal comprised of a unique collection of one-compound-per-paper short notes on synthetic compounds and natural products published bimonthly online by MDPI.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, ESCI (Web of Science), Reaxys, CAPlus / SciFinder, and other databases.
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 12.7 days after submission; acceptance to publication is undertaken in 2.7 days (median values for papers published in this journal in the second half of 2025).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
Impact Factor:
0.4 (2024)
Latest Articles
1α-Methoxy-3-oxo-8α-hydroxy-10αH-eremophila-7(11)-en-12,8β-olide from Ligularia fischeri
Molbank 2026, 2026(3), M2193; https://doi.org/10.3390/M2193 (registering DOI) - 12 Jun 2026
Abstract
One unreported eremophilane sesquiterpenoid, 1α-methoxy-3-oxo-8α-hydroxy-10αH- eremophila-7(11)-en-12,8β-olide (1), was isolated from Ligularia fischeri. The structure of 1 was identified by detailed 1D and 2D NMR and HRMS analyses.
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(This article belongs to the Section Natural Product Chemistry)
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Open AccessCorrection
Correction: Chen et al. N-(2,5-Difluorobenzylidene)-1-(2,5-difluorobenzyl)methanimine. Molbank 2026, 2026, M2174
by
Tiffany L. Chen, Manisha Sharma and Nicholas E. Leadbeater
Molbank 2026, 2026(3), M2190; https://doi.org/10.3390/M2190 - 9 Jun 2026
Abstract
There was an error in the original publication [...]
Full article
(This article belongs to the Section Organic Synthesis and Biosynthesis)
Open AccessShort Note
4-Methyl-N-(4-methylbenzyl)-N’-(4-methylbenzylidene) benzenesulfonohydrazide
by
Yue Zhang, Xiangrong Wang, Zhihan Liu, Zheng Zhang, Xiaoxu Tan and Lei Gao
Molbank 2026, 2026(3), M2192; https://doi.org/10.3390/M2192 - 9 Jun 2026
Abstract
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4-Methyl-N-(4-methylbenzyl)-N’-(4-methylbenzylidene)benzenesulfonohydrazide was synthesized via N-alkylation. The compound was characterized by nuclear magnetic resonance (NMR) spectroscopy and mass spectrometry (MS). Its molecular structure was unambiguously established by single-crystal X-ray diffraction analysis. The comprehensive spectral and crystallographic data conclusively verify
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4-Methyl-N-(4-methylbenzyl)-N’-(4-methylbenzylidene)benzenesulfonohydrazide was synthesized via N-alkylation. The compound was characterized by nuclear magnetic resonance (NMR) spectroscopy and mass spectrometry (MS). Its molecular structure was unambiguously established by single-crystal X-ray diffraction analysis. The comprehensive spectral and crystallographic data conclusively verify the successful synthesis and structural integrity of this newly prepared compound.
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Open AccessShort Note
Uranyl Complex of 1,3-bis(ditertbutylphosphinoxidomethyl)benzene
by
Maha M. Alotaibi, Md Abdul Goni, Eric Reinheimer and Tasneem A. Siddiquee
Molbank 2026, 2026(3), M2191; https://doi.org/10.3390/M2191 - 9 Jun 2026
Abstract
This short note presents a new molecule isolated and characterized from the reaction of uranyl nitrate with the PCP-type pincer ligand 1,3-bis(ditertbutylphosphinomethyl)benzene in the presence of UV light under ambient conditions. The new dinuclear uranyl-PCP complex was characterized by using FT-IR spectroscopy and
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This short note presents a new molecule isolated and characterized from the reaction of uranyl nitrate with the PCP-type pincer ligand 1,3-bis(ditertbutylphosphinomethyl)benzene in the presence of UV light under ambient conditions. The new dinuclear uranyl-PCP complex was characterized by using FT-IR spectroscopy and single-crystal X-ray crystallography. As revealed by the crystal structure, the new complex had oxygen atoms coordinating from the phosphinoxides that were oxidized under ambient conditions. Each uranium atom of this dinuclear complex was found to exhibit pentagonal bipyramidal coordination geometry.
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(This article belongs to the Section Structure Determination)
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Open AccessShort Note
2-Chloro-4,5,6,7-tetrafluoro-2-(methylthio)-1H-indene-1,3(2H)-dione
by
Anastasia R. Kovrizhina and Andrei I. Khlebnikov
Molbank 2026, 2026(3), M2189; https://doi.org/10.3390/M2189 - 8 Jun 2026
Abstract
We report the synthesis of the new compound 2-chloro-4,5,6,7-tetrafluoro-2-(methylthio)-1H-indene-1,3(2H)-dione (Compound 3), which presents an important type of fluoro-containing heterocycles and is a useful intermediate product in organic synthesis. The structure of the compound was confirmed by the NMR
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We report the synthesis of the new compound 2-chloro-4,5,6,7-tetrafluoro-2-(methylthio)-1H-indene-1,3(2H)-dione (Compound 3), which presents an important type of fluoro-containing heterocycles and is a useful intermediate product in organic synthesis. The structure of the compound was confirmed by the NMR and elemental analysis. A quantum-chemical comparison (DFT) of 2-chloro-2-(methylthio)-1H-indene-1,3(2H)-dione (with C-H bonds, compound 4) and its 4,5,6,7-tetrafluoro derivative (with C-F bonds, compound 3) at the M06-2X/6-311++G(d,p) level in THF showed that the introduction of four fluorine atoms into the benzene ring causes a systematic shortening of the C=O, C-Cl, and C-C bonds of the five-membered ring, as well as an almost twofold decrease in the dipole moment. Replacing hydrogen with fluorine leads to a simultaneous stabilization of the frontier orbitals and a narrowing of the HOMO–LUMO energy gap, while the electron affinity increases by 0.39 eV and the electrophilicity index increases from 2.77 to 3.24 eV, making compound 3 a strong electrophile. Analysis of donor–acceptor interactions (NBOs) and condensed Fukui indices confirms that perfluorination selectively increases the electrophilicity of the sp3-carbon center of C-Cl, making it more susceptible to nucleophilic attack. At the same time, the isodesmic reaction with 1,2,4,5-tetrafluorobenzene yields a positive free energy change (ΔG = +13.4 kcal/mol), indicating that the increased reactivity of compound 3 is kinetic rather than thermodynamic in nature. The synthesized 1,3-indandione derivative thus represents a promising precursor for tetrafluoroninhydrin and can be considered a biologically active compound. Thus, perfluorination of the indandione skeleton is an effective tool for targeted enhancement of electrophilic properties without fundamentally changing the geometry of the molecule, which opens up prospects for the design of new highly reactive reagents.
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(This article belongs to the Section Organic Synthesis and Biosynthesis)
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Open AccessShort Note
(2R,3R,4S,5R,6S,8R,13R,16S,17R)-11-Ethyl-13-methyl-4,6,8,9,16-pentamethoxy-11-azahexacyclo[7.7.2.12,5.01,10.03,8.013,17]nonadecane
by
Na Gao, Guo-Li Li, Lei Wang, Hong-Ying Yang, Yi-Lin He and Tong Shen
Molbank 2026, 2026(3), M2187; https://doi.org/10.3390/M2187 - 5 Jun 2026
Abstract
The Delphinium albocoeruleum Maxim is a perennial herbaceous plant of the Ranunculaceae family, genus Delphinium. It typically grows in well-drained alpine meadows or shrublands at elevations of 2500–4000 m, which shapes the species’ unique environmental adaptation mechanism and endows it with high
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The Delphinium albocoeruleum Maxim is a perennial herbaceous plant of the Ranunculaceae family, genus Delphinium. It typically grows in well-drained alpine meadows or shrublands at elevations of 2500–4000 m, which shapes the species’ unique environmental adaptation mechanism and endows it with high medicinal value. There are a few reports on the chemical constituents and biological activities of this plant. Therefore, this study focuses on the chemical constituents of the plant in order to discover structurally novel alkaloids. This paper reports on the isolation and structural characterization, using HRMS and 1D and 2D NMR, of a new alkaloid that came from the plant.
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(This article belongs to the Section Natural Product Chemistry)
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Open AccessShort Note
3-(Methylthio)-1-[(4-nitrophenyl)sulfonyl]-1H-1,2,4-triazol-5-amine
by
Diana Becerra, Mario A. Macías and Juan-Carlos Castillo
Molbank 2026, 2026(3), M2186; https://doi.org/10.3390/M2186 - 5 Jun 2026
Abstract
We report a highly chemoselective N-sulfonylation of 3-(methylthio)-1H-1,2,4-triazol-5-amine with 4-nitrobenzenesulfonyl chloride promoted by N,N-diisopropylethylamine in acetonitrile under mild conditions. This transformation selectively affords N-(4-nitrophenyl)sulfonylation at the N1 position of the 1,2,4-triazole ring over the exocyclic amine
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We report a highly chemoselective N-sulfonylation of 3-(methylthio)-1H-1,2,4-triazol-5-amine with 4-nitrobenzenesulfonyl chloride promoted by N,N-diisopropylethylamine in acetonitrile under mild conditions. This transformation selectively affords N-(4-nitrophenyl)sulfonylation at the N1 position of the 1,2,4-triazole ring over the exocyclic amine functionality. The product was fully characterized by IR, 1D and 2D NMR spectroscopy, as well as high-resolution mass spectrometry, unequivocally confirming its molecular structure.
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(This article belongs to the Collection Heterocycle Reactions)
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Open AccessShort Note
2-((((R)-3-(((9E,17Z)-18-Bromooctadeca-9,17-dien-7,15-diynoyl)oxy)-2-hydroxypropoxy)(hydroxy)phosphoryl)oxy)-N,N,N-trimethylethan-1-aminium
by
Abdu Al Nashrey, Emmanuel T. Oluwabusola, Hussin D. Almalki, Gagan Preet, Dawrin Pech-Puch, Abel M. Forero, Jaime Rodriguez, Rainer Ebel and Marcel Jaspars
Molbank 2026, 2026(3), M2188; https://doi.org/10.3390/M2188 - 5 Jun 2026
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The Saudi Arabian Red Sea has been a focus of ongoing scientific exploration due to its extensive, largely untapped marine biodiversity, particularly marine sponges. Marine sponges have long been recognised as a valuable source of unique compounds. In this study, we isolated a
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The Saudi Arabian Red Sea has been a focus of ongoing scientific exploration due to its extensive, largely untapped marine biodiversity, particularly marine sponges. Marine sponges have long been recognised as a valuable source of unique compounds. In this study, we isolated a new brominated compound (1) from the marine sponge Aiolochroia crassa, collected from the Saudi Arabian Sea, using chromatographic analyses. Molecular networking analysis revealed the presence of brominated molecules in the extract. The identified compound belongs to a class of phosphatidylcholine derivatives. The structure of compound 1 was elucidated using 1D and 2D NMR spectroscopy and high-resolution ESI-Q-TOF mass spectrometry. Further structure confirmation studies were performed using MS/MS fragmentation analysis and DFT calculations for the 1H and 13C NMR chemical shifts. This is the first report of 1 from this species of marine sponges.
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Open AccessCommunication
A Three-Step Synthesis of (3aR,7aR)-1,3-bis(4-Aminobenzyl)octahydro-2H-benzo[d]imidazole-2-thione from trans-(R, R)-diaminocyclohexane
by
Catalina Hoyos-Orozco, Ericsson Coy-Barrera and Diego Quiroga
Molbank 2026, 2026(3), M2185; https://doi.org/10.3390/M2185 - 4 Jun 2026
Abstract
Imidazolidin-2-thiones are versatile sulfur-containing heterocycles with broad biological relevance. The synthesis of (3aR,7aR)-1,3-bis(4-aminobenzyl)octahydro-2H-benzo[d]imidazole-2-thione (an imidazolidin-2-thione derivative) from trans-(R, R)-diaminocyclohexane is presented via a three-step sequence: formation of a Schiff
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Imidazolidin-2-thiones are versatile sulfur-containing heterocycles with broad biological relevance. The synthesis of (3aR,7aR)-1,3-bis(4-aminobenzyl)octahydro-2H-benzo[d]imidazole-2-thione (an imidazolidin-2-thione derivative) from trans-(R, R)-diaminocyclohexane is presented via a three-step sequence: formation of a Schiff base from 1,2-diamine and 4-nitrobenzaldehyde, followed by reduction with NaBH4; thiocarbonylation under microwave irradiation (MW) to generate the imidazolidin-2-thione core; and reduction of the nitro substituents to amines using an iron/CaCl2 system. The structure of the final compound was confirmed by detailed 1H and 13C NMR analyses, demonstrating the preservation of the bicyclic backbone and the successful conversion of the nitro functional group. The overall yield of the sequence was 28%, with the reduction of the nitro group identified as the rate-limiting step. This protocol represents a viable synthetic strategy for obtaining functionalized imidazolidin-2-thiones useful for the development of novel bioactive sulfur-containing heterocycles.
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(This article belongs to the Section Structure Determination)
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Open AccessCommunication
Development of New Aryl-Substituted 1,2,3-Triazole Derivatives of Celastrol: Synthetic Approaches and Structural Characterization
by
Yuhan Xie, Nayara Macêdo Peixoto Araujo, Stanislau Bogusz Junior, Deepa Alex and Paolo Coghi
Molbank 2026, 2026(3), M2184; https://doi.org/10.3390/M2184 - 3 Jun 2026
Abstract
In this report, we describe the synthesis of two new celastrol derivatives featuring aryl-substituted 1,2,3-triazole fragments attached to the celastrol scaffold via an ester linkage. The target compounds, incorporating 4-methoxyphenyl and p-tert-butylphenyl groups, were characterized by 1H and 13C NMR
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In this report, we describe the synthesis of two new celastrol derivatives featuring aryl-substituted 1,2,3-triazole fragments attached to the celastrol scaffold via an ester linkage. The target compounds, incorporating 4-methoxyphenyl and p-tert-butylphenyl groups, were characterized by 1H and 13C NMR spectroscopy, FTIR, UV-Vis, HRMS, melting point determination, and specific rotation measurements.
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(This article belongs to the Section Natural Product Chemistry)
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Open AccessCommunication
Synthesis and Structures of Trifluoromethylborates [pinB(Aryl)CF3]−: pinB = 4,4,5,5-Tetramethyl-1,3,2-dioxaborolane
by
Yu-En Huang and Shigekazu Ito
Molbank 2026, 2026(3), M2183; https://doi.org/10.3390/M2183 - 2 Jun 2026
Abstract
Fluoroalkyl-substituted organoboron compounds are valuable building blocks for organic synthesis and for the development of functional molecules in medicinal chemistry, agrochemicals, and materials science. Building on our previous work on difluoromethyl-substituted borates, we report the synthesis and structural characterization of trifluoromethylated borates, 2-aryl-4,4,5,5-tetramethyl-2-(trifluoromethyl)-1,3,2-dioxaborolan-2-uide
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Fluoroalkyl-substituted organoboron compounds are valuable building blocks for organic synthesis and for the development of functional molecules in medicinal chemistry, agrochemicals, and materials science. Building on our previous work on difluoromethyl-substituted borates, we report the synthesis and structural characterization of trifluoromethylated borates, 2-aryl-4,4,5,5-tetramethyl-2-(trifluoromethyl)-1,3,2-dioxaborolan-2-uide salts ([pinB(Aryl)CF3]−). Treatment of pinB–Aryl boronates (pinB = 4,4,5,5-tetramethyl-1,3,2-dioxaborolane) with trimethyl(trifluoromethyl)silane (Ruppert–Prakash reagent) in the presence of potassium tert-butoxide and 18-crown-6 ether (18-C-6) afforded the corresponding trifluoromethylated borates as isolable crystalline compounds. Compared with the related difluoromethylated borates, the CF3 substituent increases the tendency of [pinB(Aryl)CF3]− to exhibit hygroscopic behavior, as supported by a hydrated crystal structure and the formation of a hygroscopic product. The isolable trifluoromethylborates can serve as reservoirs of electrophilic trifluoromethyl radicals upon oxidation.
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(This article belongs to the Section Structure Determination)
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Open AccessShort Note
3-(Diphenylamino)-4-ethoxycyclobut-3-ene-1,2-dione
by
Nathan Long, Emanuela Paval, Joseph C. Bear, Jeremy K. Cockcroft and Stephen P. Wren
Molbank 2026, 2026(3), M2182; https://doi.org/10.3390/M2182 - 25 May 2026
Abstract
The title compound, 3-(diphenylamino)-4-ethoxycyclobut-3-ene-1,2-dione (6), was prepared by reaction of diphenylamine (2) with diethyl squarate (DES; 5) as part of our ongoing studies on monosquarate-amides. Following purification and recrystallisation, the product was isolated as a green crystalline solid.
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The title compound, 3-(diphenylamino)-4-ethoxycyclobut-3-ene-1,2-dione (6), was prepared by reaction of diphenylamine (2) with diethyl squarate (DES; 5) as part of our ongoing studies on monosquarate-amides. Following purification and recrystallisation, the product was isolated as a green crystalline solid. Its structure was established by spectroscopic methods, including FTIR, 1H NMR, 13C NMR and HRMS, and was unambiguously confirmed by single-crystal X-ray diffraction. This work provides access to a previously unreported diphenylamino-substituted squaric acid derivative.
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(This article belongs to the Section Organic Synthesis and Biosynthesis)
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Supplementary File 1 (ZIP, 6153 KB)
Supplementary File 2 (MOL, 2 KB)
Supplementary File 4 (MOL, 2 KB)
Supplementary File 1 (ZIP, 6153 KB)
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Supplementary File 4 (MOL, 2 KB)
Open AccessCommunication
Eco-Friendly Synthesis of Perimidine Derivatives Using Recyclable Fe3O4@Nano-Cellulose/Ti(IV)
by
Ghaffar Pasdar, Abdolhamid Bamoniri and Bi Bi Fatemeh Mirjalili
Molbank 2026, 2026(3), M2181; https://doi.org/10.3390/M2181 - 21 May 2026
Abstract
A novel bio-capable method has been implemented for the synthesis of newly substituted derivatives of perimidine using Fe3O4@nano-cellulose/Ti(IV) as a magnetic, sustainable, and eco-friendly Lewis acid nanocatalyst. The catalyst was thoroughly characterized by XRD, FESEM, and TGA analyses, confirming
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A novel bio-capable method has been implemented for the synthesis of newly substituted derivatives of perimidine using Fe3O4@nano-cellulose/Ti(IV) as a magnetic, sustainable, and eco-friendly Lewis acid nanocatalyst. The catalyst was thoroughly characterized by XRD, FESEM, and TGA analyses, confirming its crystalline structure, uniform nanoscale morphology, and high thermal stability. The reaction proceeded smoothly in eco-friendly solvents, providing outstanding yields under mild and rapid conditions, especially with ultrasonics. The catalyst, derived from renewable materials, exhibited remarkable activity, easy magnetic recovery, and excellent reusability over several cycles without significant loss of efficiency. Spectral characterization, IR, 1H NMR, 13C NMR, 19F NMR, and HRMS analyses verified that perimidine derivatives were synthesized properly. This sustainable and efficient approach demonstrates the prospect of green Lewis acid nanocatalysts for the sustainable synthesis of valuable heterocyclic compounds.
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(This article belongs to the Collection Heterocycle Reactions)
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Open AccessCommunication
Preparative Enzymatic Desymmetrization of (Acetyl-Leu-Pro-Lys)2-R110 Using Bovine Trypsin Variant D189S
by
Sarah Stoppe, Marianne Hahn, Martin Dauner and Frank Bordusa
Molbank 2026, 2026(3), M2179; https://doi.org/10.3390/M2179 - 20 May 2026
Abstract
Rhodamine 110 (R110) peptide conjugates are widely used fluorogenic substrates in proteolytic assays; however, their inherent symmetry results in two identical hydrolysis sites, complicating their application as well-defined substrates. Here, we report a preparative enzymatic strategy for the desymmetrization of the symmetric derivative
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Rhodamine 110 (R110) peptide conjugates are widely used fluorogenic substrates in proteolytic assays; however, their inherent symmetry results in two identical hydrolysis sites, complicating their application as well-defined substrates. Here, we report a preparative enzymatic strategy for the desymmetrization of the symmetric derivative (Acetyl-Leu-Pro-Lys)2-R110 using the bovine trypsin variant D189S. Due to pronounced differences in the rates of the two sequential hydrolysis steps, a mono-substituted intermediate accumulates under controlled reaction conditions. On a preparative scale, Acetyl-Leu-Pro-Lys-R110 was generated by partial hydrolysis and isolated by preparative HPLC in 28.8% yield and 95.8% purity. The structure of the asymmetric product was fully characterized by NMR and high-resolution mass spectrometry. This work demonstrates that selective enzymatic hydrolysis provides a simple and effective preparative route to asymmetric Rhodamine 110 derivatives, offering a practical alternative to conventional multistep synthetic approaches and enabling improved substrate design for kinetic studies.
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(This article belongs to the Section Organic Synthesis and Biosynthesis)
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Open AccessCommunication
Synthesis and Characterization of Piperazine-Linked Eugenol Derivative
by
Munishama Gowda Yenagunte Narayanaswamy, Sujeet Kumar, Siddamsetty Ramachandra Setty, Basavaraj Metikurki and Chaluvaraju Kalamuddanadoddi Chaluvegowda
Molbank 2026, 2026(3), M2180; https://doi.org/10.3390/M2180 - 20 May 2026
Abstract
In the present work, we synthesize 2-(4-allyl-2-methoxyphenoxy)-1-(4-phenylpiperazin-1-yl)ethan-1-one, a semisynthetic derivative of the natural product eugenol. The compound was synthesized via a three-step synthetic pathway involving esterification, hydrolysis, and subsequent coupling with 4-phenylpiperazine, as confirmed by FTIR, 1H NMR, 13C NMR, and
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In the present work, we synthesize 2-(4-allyl-2-methoxyphenoxy)-1-(4-phenylpiperazin-1-yl)ethan-1-one, a semisynthetic derivative of the natural product eugenol. The compound was synthesized via a three-step synthetic pathway involving esterification, hydrolysis, and subsequent coupling with 4-phenylpiperazine, as confirmed by FTIR, 1H NMR, 13C NMR, and mass spectrometric data.
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(This article belongs to the Section Natural Product Chemistry)
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Open AccessShort Note
2-Methoxy-4-[5-(2-oxo-1,3-dioxolan-4-yl)-4,5-dihydroisoxazol-3-yl]phenyl 4-n-decyloxybenzoate
by
Itamar Luís Gonçalves, Aloir Antonio Merlo, Bruna Thatise Batistel, Leonardo Rossner Wbatuba and Henrique de Aguiar Mello
Molbank 2026, 2026(3), M2178; https://doi.org/10.3390/M2178 - 13 May 2026
Abstract
This study addresses the synthesis of a new liquid crystalline compound featuring a 3,5-disubstituted isoxazoline and a 1,3-dioxolan-2-one ring, and renewable aromatic building blocks derived from vanilin and benzoic acid. The target compound was synthesized through a multistep synthetic route involving alkylation, esterification,
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This study addresses the synthesis of a new liquid crystalline compound featuring a 3,5-disubstituted isoxazoline and a 1,3-dioxolan-2-one ring, and renewable aromatic building blocks derived from vanilin and benzoic acid. The target compound was synthesized through a multistep synthetic route involving alkylation, esterification, oxime formation, and a 1,3-dipolar cycloaddition reaction. The synthesized compound, 2-methoxy-4-[5-(2-oxo-1,3-dioxolan-4-yl)-4,5-dihydroisoxazol-3-yl]phenyl 4-n-decyloxybenzoate, was isolated and fully characterized by spectroscopic techniques. Liquid crystal behavior was evaluated by DSC and POM. The monotropic mesomorphic behavior of the title compound was dictated by the interplay between molecular architecture and intermolecular organization, with the methoxy substituent and the 1,3-dioxolan-2-one ring critically influencing phase stability and texture morphology. These findings suggest a structure–property relationship and guide ongoing synthetic optimization toward achieving a stable enantiotropic liquid-crystalline phase and further ion-conduction experiments.
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(This article belongs to the Section Organic Synthesis and Biosynthesis)
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Open AccessShort Note
2,2′-(Methylenebis(3,4-dimethoxy-6,1-phenylene))diacetic Acid
by
Savina Stoyanova and Milen G. Bogdanov
Molbank 2026, 2026(3), M2177; https://doi.org/10.3390/M2177 - 11 May 2026
Abstract
The formation of side products is often unavoidable in organic synthesis; however, analyzing these secondary species provides practical insights into reaction pathways, mechanisms, and competing processes. This understanding is essential for optimizing reaction conditions, increasing product yields, and improving overall safety and efficiency.
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The formation of side products is often unavoidable in organic synthesis; however, analyzing these secondary species provides practical insights into reaction pathways, mechanisms, and competing processes. This understanding is essential for optimizing reaction conditions, increasing product yields, and improving overall safety and efficiency. Additionally, side products can sometimes reveal unexpected molecular structures with valuable properties. In this study, we present the characterization of a compound that formed as a side product in a modified Pictet-Spengler reaction. The molecular structure of 2,2′-(methylenebis(3,4-dimethoxy-6,1-phenylene))diacetic acid was elucidated using a combination of NMR, FTIR and UV–Vis spectroscopic techniques, as well as HRMS analysis.
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(This article belongs to the Collection Molecules from Side Reactions)
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Supplementary material:
Supplementary File 1 (ZIP, 897 KB)
Supplementary File 2 (MOL, 1 KB)
Supplementary File 3 (INCHI, 395 B)
Supplementary File 4 (MOL, 1 KB)
Supplementary File 5 (MOL, 1 KB)
Supplementary File 6 (INCHI, 425 B)
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Supplementary File 8 (CIF, 232 KB)
Supplementary File 9 (CIF, 297 KB)
Supplementary File 1 (ZIP, 897 KB)
Supplementary File 2 (MOL, 1 KB)
Supplementary File 3 (INCHI, 395 B)
Supplementary File 4 (MOL, 1 KB)
Supplementary File 5 (MOL, 1 KB)
Supplementary File 6 (INCHI, 425 B)
Supplementary File 7 (MOL, 1 KB)
Supplementary File 8 (CIF, 232 KB)
Supplementary File 9 (CIF, 297 KB)
Open AccessCommunication
Crystal Structures of Two 4-Alkyl-8-hydroxyquinolines
by
Sara Braun, Anke Schwarzer and Monika Mazik
Molbank 2026, 2026(3), M2176; https://doi.org/10.3390/M2176 - 11 May 2026
Abstract
4-Methyl- (1) and 4-ethyl-8-hydroxyquinoline (2) crystallize from a mixture of diethyl ether and chloroform in the triclinic space group P . X-ray analysis reveals that both compounds form discrete molecular dimers stabilized by intermolecular O-H∙∙∙N and C-H∙∙∙O
[...] Read more.
4-Methyl- (1) and 4-ethyl-8-hydroxyquinoline (2) crystallize from a mixture of diethyl ether and chloroform in the triclinic space group P . X-ray analysis reveals that both compounds form discrete molecular dimers stabilized by intermolecular O-H∙∙∙N and C-H∙∙∙O hydrogen bonds, resulting in cyclic synthons. This pattern of hydrogen bonds is further stabilized by intramolecular O-H∙∙∙N bonds so that the quinoline nitrogen atom acts as a bifurcated binding site. The dimers exhibit a planar geometry and arrange into layer-like structures held together by π∙∙∙π stacking and van der Waals forces. While the fundamental bonding motifs are similar, the increased steric demand of the ethyl group in compound 2 induces a shift in the crystallographic orientation of the layers and alters the degree of π-overlap compared to the methyl-substituted analogue 1.
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(This article belongs to the Section Structure Determination)
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Open AccessCommunication
Formation of a β-(3-Chlorobenzoyloxy)-α-hydroxyketone from a TBS-Protected Chalcone upon Oxidation with m-Chloroperbenzoic Acid
by
Sonia Berenguel-Gómez, Irene Moreno-Gutiérrez, Jenifer Acien-García, Manuel Muñoz-Dorado, Míriam Álvarez-Corral and Ignacio Rodríguez-García
Molbank 2026, 2026(3), M2175; https://doi.org/10.3390/M2175 - 9 May 2026
Abstract
A new tert-butyldimethylsilyl-protected polyoxygenated chalcone was prepared by Claisen–Schmidt condensation of suitably protected acetophenone and benzaldehyde derivatives. Treatment of this chalcone with m-chloroperbenzoic acid (mCPBA) afforded β-(3-chlorobenzoyloxy)-α-hydroxyketone 5, which was fully characterized by spectroscopic methods. The structure of 5 is consistent
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A new tert-butyldimethylsilyl-protected polyoxygenated chalcone was prepared by Claisen–Schmidt condensation of suitably protected acetophenone and benzaldehyde derivatives. Treatment of this chalcone with m-chloroperbenzoic acid (mCPBA) afforded β-(3-chlorobenzoyloxy)-α-hydroxyketone 5, which was fully characterized by spectroscopic methods. The structure of 5 is consistent with initial epoxidation of the enone double bond followed by in situ nucleophilic opening of the transient epoxide by m-chlorobenzoate generated in the reaction medium. This work reports the preparation of the chalcone precursor and the characterization of the unexpected oxidation product 5.
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(This article belongs to the Section Organic Synthesis and Biosynthesis)
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N-(2,5-Difluorobenzylidene)-1-(2,5-difluorobenzyl)methanimine
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Tiffany L. Chen, Manisha Sharma and Nicholas E. Leadbeater
Molbank 2026, 2026(3), M2174; https://doi.org/10.3390/M2174 - 8 May 2026
Cited by 1
Abstract
The conversion of 2,5-difluorobenzylamine to N-(2,5-difluorobenzylidene)-1-(2,5-difluorobenzyl)methanimine using an oxoammonium salt bearing the nitrate anion is reported. The reaction is operationally simple, and the product is obtained with good yield.
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(This article belongs to the Section Organic Synthesis and Biosynthesis)
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