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Metabolites, Volume 9, Issue 11

2019 November - 39 articles

Cover Story: We used a lipidomic approach to identify potential lipid mediators of docosahexaenoic acid [DHA]-mediated attenuation of Western diet (WD)-induced nonalcoholic steatohepatitis (NASH). WD-induced NASH in Ldlr - /- mice increases hepatic steatosis, inflammation, fibrosis, membrane arachidonic acid (ARA) content, and formation of ARA-derived pro-inflammatory oxylipins and decreases C20-22 ω3 PUFA-derived anti-inflammatory oxylipins. DHA supplementation of the WD reversed all of these NASH features. While hepatic pro-inflammatory ARA-derived oxylipins were associated with NASH, DHA-mediated attenuation of NASH was associated with increased hepatic C20-22 ω3 PUFA and anti-inflammatory C20-22 ω3 PUFA-derived oxylipins. Hepatic content of ω3 and ω6 PUFA-derived oxylipins may be a good predictor of liver health. View this paper.
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Articles (39)

  • Article
  • Open Access
8 Citations
5,659 Views
15 Pages

A New Classification Method of Metastatic Cancers Using a 1H-NMR-Based Approach: A Study Case of Melanoma, Breast, and Prostate Cancer Cell Lines

  • Corentin Schepkens,
  • Matthieu Dallons,
  • Jonas Dehairs,
  • Ali Talebi,
  • Jérôme Jeandriens,
  • Lise-Marie Drossart,
  • Guillaume Auquier,
  • Vanessa Tagliatti,
  • Johannes V. Swinnen and
  • Jean-Marie Colet

17 November 2019

In this study, metastatic melanoma, breast, and prostate cancer cell lines were analyzed using a 1H-NMR-based approach in order to investigate common features and differences of aggressive cancers metabolomes. For that purpose, 1H-NMR spectra of both...

  • Article
  • Open Access
16 Citations
4,202 Views
14 Pages

Effects of Aging and Methionine Restriction on Rat Kidney Metabolome

  • Irene Pradas,
  • Mariona Jové,
  • Rosanna Cabré,
  • Victoria Ayala,
  • Natalia Mota-Martorell and
  • Reinald Pamplona

14 November 2019

Methionine restriction (MetR) in animal models extends maximum longevity and seems to promote renoprotection by attenuating kidney injury. MetR has also been proven to affect several metabolic pathways including lipid metabolism. However, there is a...

  • Communication
  • Open Access
5 Citations
3,569 Views
12 Pages

Historical Biobanks in Breast Cancer Metabolomics— Challenges and Opportunities

  • Torfinn S. Madssen,
  • Maria D. Cao,
  • Arne V. Pladsen,
  • Lars Ottestad,
  • Kristine K. Sahlberg,
  • Tone F. Bathen and
  • Guro F. Giskeødegård

13 November 2019

Background: Metabolomic characterization of tumours can potentially improve prediction of cancer prognosis and treatment response. Here, we describe efforts to validate previous metabolomic findings using a historical cohort of breast cancer patients...

  • Article
  • Open Access
19 Citations
4,811 Views
17 Pages

Multi-Organ NMR Metabolomics to Assess In Vivo Overall Metabolic Impact of Cisplatin in Mice

  • Tatiana J. Carneiro,
  • Rita Araújo,
  • Martin Vojtek,
  • Salomé Gonçalves-Monteiro,
  • Carmen Diniz,
  • Ana L.M. Batista de Carvalho,
  • Maria Paula M. Marques and
  • Ana M. Gil

13 November 2019

This work describes, to our knowledge, the first NMR metabolomics analysis of mice kidney, liver, and breast tissue in response to cisplatin exposure, in search of early metabolic signatures of cisplatin biotoxicity. Balb/c mice were exposed to a sin...

  • Article
  • Open Access
28 Citations
5,503 Views
14 Pages

Metabolomics Distinguishes DOCK8 Deficiency from Atopic Dermatitis: Towards a Biomarker Discovery

  • Minnie Jacob,
  • Xinyun Gu,
  • Xian Luo,
  • Hamoud Al-Mousa,
  • Rand Arnaout,
  • Bandar Al-Saud,
  • Andreas L. Lopata,
  • Liang Li,
  • Majed Dasouki and
  • Anas M. Abdel Rahman

12 November 2019

Bi-allelic mutations in the dedicator of cytokinesis 8 (DOCK8) are responsible for a rare autosomal recessive primary combined immunodeficiency syndrome, characterized by atopic dermatitis, elevated serum Immunoglobulin E (IgE) levels, recurrent seve...

  • Article
  • Open Access
3 Citations
4,242 Views
12 Pages

Urea Cycle Related Amino Acids Measured in Dried Bloodspots Enable Long-Term In Vivo Monitoring and Therapeutic Adjustment

  • Julien Baruteau,
  • Youssef Khalil,
  • Stephanie Grunewald,
  • Marta Zancolli,
  • Anupam Chakrapani,
  • Maureen Cleary,
  • James Davison,
  • Emma Footitt,
  • Simon N. Waddington and
  • Philippa Mills
  • + 1 author

12 November 2019

Background: Dried bloodspots are easy to collect and to transport to assess various metabolites, such as amino acids. Dried bloodspots are routinely used for diagnosis and monitoring of some inherited metabolic diseases. Methods: Measurement of amino...

  • Review
  • Open Access
87 Citations
8,882 Views
14 Pages

Metabolomics Applied to the Study of Extracellular Vesicles

  • Charles Williams,
  • Mari Palviainen,
  • Niels-Christian Reichardt,
  • Pia R.-M. Siljander and
  • Juan M. Falcón-Pérez

12 November 2019

Cell-secreted extracellular vesicles (EVs) have rapidly gained prominence as sources of biomarkers for non-invasive biopsies, owing to their ubiquity across human biofluids and physiological stability. There are many characterisation studies directed...

  • Article
  • Open Access
51 Citations
6,585 Views
13 Pages

12 November 2019

The dried blood spot (DBS) sampling has a lot of advantages in comparison with the “standard” venous blood collecting, such as small collection volume, painless and easy sample collection with minimal training required, stable and transpo...

  • Article
  • Open Access
6 Citations
3,052 Views
9 Pages

Production of a New Cyclic Depsipeptide by the Culture Broth of Staphylococcus sp. Isolated from Corallina officinalis L.

  • Reda F. A. Abdelhameed,
  • Sameh S. Elhady,
  • Ahmad O. Noor,
  • Diena M. Almasri,
  • Alaa A. Bagalagel,
  • Galal T. Maatooq,
  • Amgad I. M. Khedr and
  • Koji Yamada

11 November 2019

A new cyclic depsipeptide (1) has been isolated from culture broth of Staphylococcus sp. (No. P-100826-4-6) derived from Corallina officinalis L., together with the known compounds indol-3-carboxylic acid (2), 1,5-dideoxy-3-C-methyl arabinitol (3), t...

  • Review
  • Open Access
35 Citations
8,719 Views
14 Pages

A New Perspective on the Health Benefits of Moderate Beer Consumption: Involvement of the Gut Microbiota

  • Mar Quesada-Molina,
  • Araceli Muñoz-Garach,
  • Francisco J. Tinahones and
  • Isabel Moreno-Indias

9 November 2019

Beer is the most widely consumed fermented beverage in the world. A moderate consumption of beer has been related to important healthy outcomes, although the mechanisms have not been fully understood. Beer contains only a few raw ingredients but tran...

  • Article
  • Open Access
15 Citations
5,796 Views
21 Pages

Metabolomics Test Materials for Quality Control: A Study of a Urine Materials Suite

  • Daniel W. Bearden,
  • David A. Sheen,
  • Yamil Simón-Manso,
  • Bruce A. Benner,
  • Werickson F. C. Rocha,
  • Niksa Blonder,
  • Katrice A. Lippa,
  • Richard D. Beger,
  • Laura K. Schnackenberg and
  • Daniel Raftery
  • + 6 authors

7 November 2019

There is a lack of experimental reference materials and standards for metabolomics measurements, such as urine, plasma, and other human fluid samples. Reasons include difficulties with supply, distribution, and dissemination of information about the...

  • Article
  • Open Access
32 Citations
5,728 Views
17 Pages

Untargeted Urinary 1H NMR-Based Metabolomic Pattern as a Potential Platform in Breast Cancer Detection

  • Catarina L. Silva,
  • Ana Olival,
  • Rosa Perestrelo,
  • Pedro Silva,
  • Helena Tomás and
  • José S. Câmara

7 November 2019

Breast cancer (BC) remains the second leading cause of death among women worldwide. An emerging approach based on the identification of endogenous metabolites (EMs) and the establishment of the metabolomic fingerprint of biological fluids constitutes...

  • Article
  • Open Access
75 Citations
7,074 Views
30 Pages

Caucasian Gentiana Species: Untargeted LC-MS Metabolic Profiling, Antioxidant and Digestive Enzyme Inhibiting Activity of Six Plants

  • Daniil N. Olennikov,
  • Aydan I. Gadimli,
  • Javanshir I. Isaev,
  • Nina I. Kashchenko,
  • Alexey S. Prokopyev,
  • Tatyana N. Kataeva,
  • Nadezhda K. Chirikova and
  • Cecile Vennos

7 November 2019

The members of Gentiana genus are widely distributed in the Caucasus region where they are used as phytoremedies, but they still have not been studied for their chemical composition and bioactivity. High-performance liquid chromatography with diode a...

  • Review
  • Open Access
51 Citations
7,362 Views
13 Pages

Intrauterine Growth Restriction: New Insight from the Metabolomic Approach

  • Elena Priante,
  • Giovanna Verlato,
  • Giuseppe Giordano,
  • Matteo Stocchero,
  • Silvia Visentin,
  • Veronica Mardegan and
  • Eugenio Baraldi

6 November 2019

Recognizing intrauterine growth restriction (IUGR) is a matter of great concern because this condition can significantly affect the newborn’s short- and long-term health. Ever since the first suggestion of the “thrifty phenotype hypothesi...

  • Article
  • Open Access
3 Citations
3,106 Views
11 Pages

Study of the Differentially Expressed Genes in the Pomacea canaliculata Transcriptome after Treatment with Pedunsaponin A

  • Chunping Yang,
  • Tianxing Lv,
  • Yangyang Zhang,
  • Bin Wang,
  • Xiaomin Zhao,
  • Min Zhang,
  • Guoshu Gong,
  • Xiaoli Chang,
  • Guizhou Yue and
  • Huabao Chen
  • + 2 authors

6 November 2019

Transcriptomes, genomes, and proteomes have played important roles in the search for drug targets. To determine the molluscicidal mechanism of pedunsaponin A against Pomacea canaliculata, RNA-seq technology was adopted to analyze the differentially e...

  • Article
  • Open Access
21 Citations
5,299 Views
12 Pages

Heat Stress-Induced Metabolic Remodeling in Saccharomyces cerevisiae

  • Daqiang Pan,
  • Nils Wiedemann and
  • Bernd Kammerer

5 November 2019

Yeast cells respond to heat stress by remodeling their gene expression, resulting in the changes of the corresponding proteins and metabolites. Compared to the intensively investigated transcriptome and proteome, the metabolic response to heat stress...

  • Article
  • Open Access
1 Citations
3,464 Views
10 Pages

4 November 2019

Metabolites represent the most downstream information of the cellular organisation. Hence, metabolomics experiments are extremely valuable to unravel the endogenous pathways involved in a toxicological mode of action. However, every external stimulus...

  • Article
  • Open Access
39 Citations
4,043 Views
18 Pages

2 November 2019

Pre-clinical safety evaluation of traditional medicines is imperative because of the universality of drug-induced adverse reactions. Psoralen and isopsoralen are the major active molecules and quality-control components of a traditional herbal medici...

  • Article
  • Open Access
22 Citations
4,021 Views
21 Pages

Seasonal Variations and Interspecific Differences in Metabolomes of Freshwater Fish Tissues: Quantitative Metabolomic Profiles of Lenses and Gills

  • Yuri P. Tsentalovich,
  • Vadim V. Yanshole,
  • Lyudmila V. Yanshole,
  • Ekaterina A. Zelentsova,
  • Arsenty D. Melnikov and
  • Renad Z. Sagdeev

2 November 2019

This work represents the first comprehensive report on quantitative metabolomic composition of tissues of pike-perch (Sander lucioperca) and Siberian roach (Rutilus rutilus lacustris). The total of 68 most abundant metabolites are identified and quan...

  • Review
  • Open Access
715 Citations
30,043 Views
13 Pages

1 November 2019

The war on multidrug resistance (MDR) has resulted in the greatest loss to the world’s economy. Antibiotics, the bedrock, and wonder drug of the 20th century have played a central role in treating infectious diseases. However, the inappropriate...

  • Article
  • Open Access
49 Citations
6,762 Views
15 Pages

1 November 2019

Extracellular vesicles (EVs) consist of lipid bilayers, occur in various biofluids, and are invaluable in biomarker screening. Liquid chromatography coupled with high-resolution mass spectrometry (LC-MS) was recently used to study comprehensive EV li...

  • Article
  • Open Access
8 Citations
4,048 Views
14 Pages

Screening of Molecular Targets of Action of Atractylodin in Cholangiocarcinoma by Applying Proteomic and Metabolomic Approaches

  • Kanawut Kotawong,
  • Wanna Chaijaroenkul,
  • Sittiruk Roytrakul,
  • Narumon Phaonakrop and
  • Kesara Na-Bangchang

1 November 2019

Cholangiocarcinoma (CCA) is cancer of the bile duct and the highest incidence of CCA in the world is reported in Thailand. Our previous in vitro and in vivo studies identified Atractylodes lancea (Thunb) D.C. as a promising candidate for CCA treatmen...

  • Article
  • Open Access
57 Citations
9,821 Views
24 Pages

Metabolic Profiling of Human Plasma and Urine, Targeting Tryptophan, Tyrosine and Branched Chain Amino Acid Pathways

  • Andrea Anesi,
  • Josep Rubert,
  • Kolade Oluwagbemigun,
  • Ximena Orozco-Ruiz,
  • Ute Nöthlings,
  • Monique M.B. Breteler and
  • Fulvio Mattivi

1 November 2019

Tryptophan and tyrosine metabolism has a major effect on human health, and disorders have been associated with the development of several pathologies. Recently, gut microbial metabolism was found to be important for maintaining correct physiology. He...

  • Article
  • Open Access
21 Citations
3,120 Views
9 Pages

Relationship between Metabolomics Profile of Perilymph in Cochlear-Implanted Patients and Duration of Hearing Loss

  • Thuy-Trân Trinh,
  • Hélène Blasco,
  • Patrick Emond,
  • Christian Andres,
  • Antoine Lefevre,
  • Emmanuel Lescanne and
  • David Bakhos

1 November 2019

Perilymph metabolomic analysis is an emerging innovative strategy to improve our knowledge of physiopathology in sensorineural hearing loss. This study aims to develop a metabolomic profile of human perilymph with which to evaluate the relationship b...

  • Article
  • Open Access
8 Citations
4,070 Views
16 Pages

Influence of Drying Method on NMR-Based Metabolic Profiling of Human Cell Lines

  • Irina Petrova,
  • Shenyuan Xu,
  • William C. Joesten,
  • Shuisong Ni and
  • Michael A. Kennedy

31 October 2019

Metabolic profiling of cell line and tissue extracts involves sample processing that includes a drying step prior to re-dissolving the cell or tissue extracts in a buffer for analysis by GC/LC-MS or NMR. Two of the most commonly used drying technique...

  • Article
  • Open Access
36 Citations
6,053 Views
12 Pages

Inter-Laboratory Comparison of Metabolite Measurements for Metabolomics Data Integration

  • Yoshihiro Izumi,
  • Fumio Matsuda,
  • Akiyoshi Hirayama,
  • Kazutaka Ikeda,
  • Yoshihiro Kita,
  • Kanta Horie,
  • Daisuke Saigusa,
  • Kosuke Saito,
  • Yuji Sawada and
  • Yoshiya Oda
  • + 9 authors

31 October 2019

Background: One of the current problems in the field of metabolomics is the difficulty in integrating data collected using different equipment at different facilities, because many metabolomic methods have been developed independently and are unique...

  • Article
  • Open Access
37 Citations
5,887 Views
17 Pages

Quantification of Urinary Phenyl-γ-Valerolactones and Related Valeric Acids in Human Urine on Consumption of Apples

  • Andrea Anesi,
  • Pedro Mena,
  • Achim Bub,
  • Marynka Ulaszewska,
  • Daniele Del Rio,
  • Sabine E. Kulling and
  • Fulvio Mattivi

29 October 2019

Flavan-3-ols are dietary bioactive molecules that have beneficial effects on human health and reduce the risk of various diseases. Monomeric flavan-3-ols are rapidly absorbed in the small intestine and released in the blood stream as phase II conjuga...

  • Article
  • Open Access
32 Citations
5,454 Views
23 Pages

29 October 2019

Spongy tissue disorder, a mesocarp specific malady, severely affects the flavor and pulp characters of Alphonso mango fruit reducing its consumer acceptability. Here, we investigated comparative metabolomic changes that occur during ripening in healt...

  • Article
  • Open Access
25 Citations
6,658 Views
23 Pages

28 October 2019

Nonalcoholic fatty liver disease (NAFLD) is a major public health problem worldwide. NAFLD ranges in severity from benign steatosis to nonalcoholic steatohepatitis (NASH), cirrhosis, and primary hepatocellular cancer (HCC). Obesity and type 2 diabete...

  • Article
  • Open Access
21 Citations
4,402 Views
19 Pages

Lipidomics of Brain Tissues in Rats Fed Human Milk from Chinese Mothers or Commercial Infant Formula

  • Miya Su,
  • Arvind K. Subbaraj,
  • Karl Fraser,
  • Xiaoyan Qi,
  • Hongxin Jia,
  • Wenliang Chen,
  • Mariza Gomes Reis,
  • Mike Agnew,
  • Li Day and
  • Wayne Young
  • + 1 author

28 October 2019

Holistic benefits of human milk to infants, particularly brain development and cognitive behavior, have stipulated that infant formula be tailored in composition like human milk. However, the composition of human milk, especially lipids, and their ef...

  • Article
  • Open Access
35 Citations
8,908 Views
15 Pages

Creating a Reliable Mass Spectral–Retention Time Library for All Ion Fragmentation-Based Metabolomics

  • Ipputa Tada,
  • Hiroshi Tsugawa,
  • Isabel Meister,
  • Pei Zhang,
  • Rie Shu,
  • Riho Katsumi,
  • Craig E. Wheelock,
  • Masanori Arita and
  • Romanas Chaleckis

26 October 2019

Accurate metabolite identification remains one of the primary challenges in a metabolomics study. A reliable chemical spectral library increases the confidence in annotation, and the availability of raw and annotated data in public databases facilita...

  • Article
  • Open Access
18 Citations
3,370 Views
13 Pages

Subnormothermic Machine Perfusion of Steatotic Livers Results in Increased Energy Charge at the Cost of Anti-Oxidant Capacity Compared to Normothermic Perfusion

  • Negin Karimian,
  • Siavash Raigani,
  • Viola Huang,
  • Sonal Nagpal,
  • Ehab O. A. Hafiz,
  • Irene Beijert,
  • Paria Mahboub,
  • Robert J. Porte,
  • Korkut Uygun and
  • Heidi Yeh
  • + 1 author

24 October 2019

There continues to be significant debate regarding the most effective mode of ex situ machine perfusion of livers for transplantation. Subnormothermic (SNMP) and normothermic machine perfusion (NMP) are two methods with different benefits. We examine...

  • Article
  • Open Access
16 Citations
4,326 Views
17 Pages

Troubleshooting in Large-Scale LC-ToF-MS Metabolomics Analysis: Solving Complex Issues in Big Cohorts

  • Juan Rodríguez-Coira,
  • María I Delgado-Dolset,
  • David Obeso,
  • Mariana Dolores-Hernández,
  • Guillermo Quintás,
  • Santiago Angulo,
  • Domingo Barber,
  • Teresa Carrillo,
  • María M. Escribese and
  • Alma Villaseñor

24 October 2019

Metabolomics, understood as the science that manages the study of compounds from the metabolism, is an essential tool for deciphering metabolic changes in disease. The experiments rely on the use of high-throughput analytical techniques such as liqui...

  • Article
  • Open Access
41 Citations
5,192 Views
25 Pages

Quantitative 1H NMR Metabolomics Reveal Distinct Metabolic Adaptations in Human Macrophages Following Differential Activation

  • Amanda L. Fuchs,
  • Sage M. Schiller,
  • Wyatt J. Keegan,
  • Mary Cloud B. Ammons,
  • Brian Eilers,
  • Brian Tripet and
  • Valérie Copié

24 October 2019

Macrophages (MΦs) are phagocytic immune cells that are found in nearly all human tissues, where they modulate innate and adaptive immune responses, thereby maintaining cellular homeostasis. MΦs display a spectrum of functional phenotypes as a...

  • Article
  • Open Access
5 Citations
3,414 Views
9 Pages

Abscisic Acid Receptors Modulate Metabolite Levels and Phenotype in Arabidopsis Under Normal Growing Conditions

  • Xiaoyi Li,
  • Lintao Wu,
  • Yao Qiu,
  • Tao Wang,
  • Qin Zhou,
  • Qian Zhang,
  • Wei Zhang and
  • Zhibin Liu

24 October 2019

Abscisic acid (ABA) is a vital phytohormone that accumulates in response to various biotic and abiotic stresses, as well as plant growth. In Arabidopsis thaliana, there are 14 members of the ABA receptor family, which are key positive regulators invo...

  • Article
  • Open Access
7 Citations
3,068 Views
11 Pages

Analytic Correlation Filtration: A New Tool to Reduce Analytical Complexity of Metabolomic Datasets

  • Stephanie Monnerie,
  • Melanie Petera,
  • Bernard Lyan,
  • Pierrette Gaudreau,
  • Blandine Comte and
  • Estelle Pujos-Guillot

24 October 2019

Metabolomics generates massive and complex data. Redundant different analytical species and the high degree of correlation in datasets is a constraint for the use of data mining/statistical methods and interpretation. In this context, we developed a...

  • Article
  • Open Access
3 Citations
3,477 Views
14 Pages

NMR-Metabolomics Shows That BolA Is an Important Modulator of Salmonella Typhimurium Metabolic Processes under Virulence Conditions

  • Gil Graça-Lopes,
  • Gonçalo Graça,
  • Susana Barahona,
  • Ricardo N. Moreira,
  • Cecília M. Arraiano and
  • Luís G. Gonçalves

23 October 2019

BolA is a ubiquitous global transcription factor. Despite its clear role in the induction of important stress-resistant physiological changes and its recent implication in the virulence of Salmonella, further research is required to shed light on the...

  • Article
  • Open Access
11 Citations
3,635 Views
14 Pages

Neuroprotective Effect of Cyperi rhizome against Corticosterone-Induced PC12 Cell Injury via Suppression of Ca2+ Overloading

  • Hongmei Jia,
  • Yang Liu,
  • Meng Yu,
  • Hai Shang,
  • Hongwu Zhang,
  • Liyan Ma,
  • Tao Zhang and
  • Zhongmei Zou

23 October 2019

Cyperi Rhizoma (CR) is a well-known functional food and traditional herbal medicine in Asian countries for the treatment of menstrual or emotional disturbances in women. Recent studies have shown the pharmacological effects of CR on neuronal diseases...

  • Review
  • Open Access
12 Citations
3,729 Views
13 Pages

23 October 2019

Subarachnoid hemorrhage (SAH) is one of the deadliest types of strokes with high rates of morbidity and permanent injury. Fluctuations in the levels of cerebral metabolites following SAH can be indicators of brain injury severity. Specifically, the c...

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Metabolites - ISSN 2218-1989