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International Journal of Molecular Sciences, Volume 14, Issue 3

2013 March - 115 articles

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Articles (115)

  • Article
  • Open Access
47 Citations
8,119 Views
17 Pages

Preparation of a Paeonol-Containing Temperature-Sensitive In Situ Gel and Its Preliminary Efficacy on Allergic Rhinitis

  • Kedan Chu,
  • Lidian Chen,
  • Wei Xu,
  • Huang Li,
  • Yuqin Zhang,
  • Weirong Xie and
  • Jian Zheng

22 March 2013

In this paper, the optimal composition of a paeonol temperature-sensitive in situ gel composed of poloxamer 407 (P407) was determined, and a preliminary study of its effect on allergic rhinitis was performed. The optimal composition of the paeonol te...

  • Correction
  • Open Access
5,680 Views
2 Pages

22 March 2013

The original version of the paper reports that “OGX-011 is a second generation 21-mer oligonucleotide with a 20-O-(2-methoxy)-ethyl modification, generously provided by OncoGenex Technologies (OncoGenex, Vancouver, Canada)” [1] (p. 10602). OGX-011 wa...

  • Article
  • Open Access
10 Citations
9,117 Views
11 Pages

22 March 2013

Consistent grain yield in drought environment has attracted wide attention due to global climate change. However, the important drought-related traits/genes in crops have been rarely reported. Many near-isogenic lines (NILs) of male sterile and ferti...

  • Article
  • Open Access
12 Citations
11,606 Views
18 Pages

Thermostable Mismatch-Recognizing Protein MutS Suppresses Nonspecific Amplification during Polymerase Chain Reaction (PCR)

  • Kenji Fukui,
  • Yoshitaka Bessho,
  • Atsuhiro Shimada,
  • Shigeyuki Yokoyama and
  • Seiki Kuramitsu

21 March 2013

Polymerase chain reaction (PCR)-related technologies are hampered mainly by two types of error: nonspecific amplification and DNA polymerase-generated mutations. Here, we report that both errors can be suppressed by the addition of a DNA mismatch-r...

  • Review
  • Open Access
39 Citations
11,190 Views
13 Pages

UPR Signal Activation by Luminal Sensor Domains

  • Marta Carrara,
  • Filippo Prischi and
  • Maruf M. U. Ali

21 March 2013

The unfolded protein response (UPR) is a cell-signaling system that detects the accumulation of unfolded protein within the endoplasmic reticulum (ER) and initiates a number of cellular responses to restore ER homeostasis. The presence of unfolded pr...

  • Article
  • Open Access
10 Citations
8,901 Views
20 Pages

Differential Expression of Genes Associated with the Progression of Renal Disease in the Kidneys of Liver-Specific Glucokinase Gene Knockout Mice

  • Wei Xu,
  • Hui Li,
  • Rong Wang,
  • Zhen Lei,
  • Yiqing Mao,
  • Xi Wang,
  • Yizhuang Zhang,
  • Tingting Guo,
  • Rongjing Song and
  • Huanran Tan
  • + 5 authors

21 March 2013

Liver glucokinase (GCK) deficient mice possess mild renal complications associated with diabetes. To investigate the progression of kidney disease and identify candidate genes involved in the pathogenesis of renal damage, we examined changes in tissu...

  • Review
  • Open Access
29 Citations
9,741 Views
12 Pages

21 March 2013

Cell survival, homeostasis and cell polarity rely on the control of membrane trafficking pathways. The RUN domain (comprised of the RPIP8, UNC-14, and NESCA proteins) has been suggested to be implicated in small GTPase-mediated membrane trafficking a...

  • Review
  • Open Access
107 Citations
10,037 Views
32 Pages

20 March 2013

Worldwide, metals have been distributed to excessive levels in the environment due to industrial and agricultural activities. Plants growing on soils contaminated with excess levels of metals experience a disturbance of the cellular redox balance, wh...

  • Review
  • Open Access
229 Citations
31,467 Views
22 Pages

20 March 2013

The human skin is an integral system that acts as a physical and immunological barrier to outside pathogens, toxicants, and harmful irradiations. Environmental ultraviolet rays (UV) from the sun might potentially play a more active role in regulating...

  • Article
  • Open Access
36 Citations
9,504 Views
18 Pages

19 March 2013

Protein misfolding and aggregation cause serious degenerative diseases, such as Alzheimer’s and type II diabetes. Human islet amyloid polypeptide (hIAPP) is the major component of amyloid deposits found in the pancreas of type II diabetic patients. I...

  • Review
  • Open Access
261 Citations
31,617 Views
47 Pages

Annexin A2 Heterotetramer: Structure and Function

  • Alamelu Bharadwaj,
  • Moamen Bydoun,
  • Ryan Holloway and
  • David Waisman

19 March 2013

Annexin A2 is a pleiotropic calcium- and anionic phospholipid-binding protein that exists as a monomer and as a heterotetrameric complex with the plasminogen receptor protein, S100A10. Annexin A2 has been proposed to play a key role in many processes...

  • Review
  • Open Access
234 Citations
19,851 Views
39 Pages

19 March 2013

The air that we breathe contains nearly 21% oxygen, most of which is utilized by mitochondria during respiration. While we cannot live without it, it was perceived as a bane to aerobic organisms due to the generation of reactive oxygen and nitrogen m...

  • Article
  • Open Access
23 Citations
8,999 Views
14 Pages

Abnormal Skeletal Growth in Adolescent Idiopathic Scoliosis Is Associated with Abnormal Quantitative Expression of Melatonin Receptor, MT2

  • Annie Po-yee Yim,
  • Hiu-yan Yeung,
  • Guangquan Sun,
  • Kwong-man Lee,
  • Tzi-bun Ng,
  • Tsz-ping Lam,
  • Bobby Kin-wah Ng,
  • Yong Qiu,
  • Alain Moreau and
  • Jack Chun-yiu Cheng

19 March 2013

The defect of the melatonin signaling pathway has been proposed to be one of the key etiopathogenic factors in adolescent idiopathic scoliosis (AIS). A previous report showed that melatonin receptor, MT2, was undetectable in some AIS girls. The prese...

  • Review
  • Open Access
60 Citations
12,757 Views
23 Pages

Ubiquitinations in the Notch Signaling Pathway

  • Julien Moretti and
  • Christel Brou

19 March 2013

The very conserved Notch pathway is used iteratively during development and adulthood to regulate cell fates. Notch activation relies on interactions between neighboring cells, through the binding of Notch receptors to their ligands, both transmembr...

  • Article
  • Open Access
80 Citations
9,374 Views
10 Pages

18 March 2013

Five antioxidant and two oxidative stress assays were applied to serum samples of 43 healthy males. The antioxidant tests showed different inter-assay correlations. A very good correlation of 0.807 was observed between the ferric reducing ability of...

  • Review
  • Open Access
287 Citations
19,968 Views
28 Pages

Cadmium-Induced Pathologies: Where Is the Oxidative Balance Lost (or Not)?

  • Ambily Ravindran Nair,
  • Olivier DeGheselle,
  • Karen Smeets,
  • Emmy Van Kerkhove and
  • Ann Cuypers

18 March 2013

Over the years, anthropogenic factors have led to cadmium (Cd) accumulation in the environment causing various health problems in humans. Although Cd is not a Fenton-like metal, it induces oxidative stress in various animal models via indirect mechan...

  • Letter
  • Open Access
4 Citations
8,020 Views
13 Pages

18 March 2013

Due to the recent discovery of non-coding RNAs (ncRNAs), multiple sequence alignment (MSA) of those long RNA sequences is becoming increasingly important for classifying and determining the functional motifs in RNAs. However, not only primary (nucleo...

  • Article
  • Open Access
20 Citations
9,791 Views
13 Pages

LC-MS/MS Determination of Isoprostanes in Plasma Samples Collected from Mice Exposed to Doxorubicin or Tert-Butyl Hydroperoxide

  • Monika Janicka,
  • Agata Kot-Wasik,
  • Jolanta Paradziej-Łukowicz,
  • Grażyna Sularz-Peszyńska,
  • Agnieszka Bartoszek and
  • Jacek Namieśnik

18 March 2013

Isoprostanes are stable products of arachidonic acid peroxidation and are regarded as the most reliable markers of oxidative stress in vivo. Here we describe the LC-MS/MS procedure enabling simultaneous determination of four regioisomers (8-iso pro...

  • Review
  • Open Access
32 Citations
11,902 Views
17 Pages

The Lipid Transfer Protein StarD7: Structure, Function, and Regulation

  • Jésica Flores-Martin,
  • Viviana Rena,
  • Sofía Angeletti,
  • Graciela M. Panzetta-Dutari and
  • Susana Genti-Raimondi

18 March 2013

The steroidogenic acute regulatory (StAR) protein-related lipid transfer (START) domain proteins constitute a family of evolutionarily conserved and widely expressed proteins that have been implicated in lipid transport, metabolism, and signaling. T...

  • Article
  • Open Access
14 Citations
11,547 Views
18 Pages

A Novel Moderate Constitutive Promoter Derived from Poplar (Populus tomentosa Carrière)

  • Zhong Chen,
  • Jia Wang,
  • Mei-Xia Ye,
  • Hao Li,
  • Le-Xiang Ji,
  • Ying Li,
  • Dong-Qing Cui,
  • Jun-Mei Liu and
  • Xin-Min An

18 March 2013

A novel sequence that functions as a promoter element for moderate constitutive expression of transgenes, designated as the PtMCP promoter, was isolated from the woody perennial Populus tomentosa. The PtMCP promoter was fused to the GUS reporter gene...

  • Article
  • Open Access
31 Citations
10,069 Views
18 Pages

Combinatorial Analysis of Secretory Immunoglobulin A (sIgA) Expression in Plants

  • Paloma Juarez,
  • Estefania Huet-Trujillo,
  • Alejandro Sarrion-Perdigones,
  • Erica Elvira Falconi,
  • Antonio Granell and
  • Diego Orzaez

18 March 2013

Delivery of secretory immunoglobulin A (sIgA) to mucosal surfaces as a passive immunotherapy agent is a promising strategy to prevent infectious diseases. Recombinant sIgA production in plants requires the co-expression of four transcriptional units...

  • Article
  • Open Access
55 Citations
13,863 Views
18 Pages

Gold-Coated Iron Composite Nanospheres Targeted the Detection of Escherichia coli

  • Ugur Tamer,
  • Demet Cetin,
  • Zekiye Suludere,
  • Ismail Hakkı Boyaci,
  • Havva Tumay Temiz,
  • Hande Yegenoglu,
  • Philippe Daniel,
  • İlker Dinçer and
  • Yalçın Elerman

18 March 2013

We report the preparation and characterization of spherical core-shell structured Fe3O4–Au magnetic nanoparticles, modified with two component self-assembled monolayers (SAMs) consisting of 3–mercaptophenylboronic acid (3–MBA) and 1–decanethiol (1–DT...

  • Review
  • Open Access
27 Citations
10,385 Views
20 Pages

15 March 2013

The mammalian skull vault, a product of a unique and tightly regulated evolutionary process, in which components of disparate embryonic origin are integrated, is an elegant model with which to study osteoblast biology. Our laboratory has demonstrated...

  • Article
  • Open Access
9 Citations
7,516 Views
14 Pages

15 March 2013

Given that podocalyxin (PCX) and nestin play important roles in podocyte morphogenesis and the maintenance of structural integrity, we examined whether the expression and localization of these two podocyte proteins were influenced in the early stage...

  • Article
  • Open Access
116 Citations
12,630 Views
14 Pages

Inhibitory Effect of Baicalin and Baicalein on Ovarian Cancer Cells

  • Jianchu Chen,
  • Zhaoliang Li,
  • Allen Y. Chen,
  • Xingqian Ye,
  • Haitao Luo,
  • Gary O. Rankin and
  • Yi Charlie Chen

15 March 2013

Ovarian cancer is one of the primary causes of death for women all through the Western world. Baicalin and baicalein are naturally occurring flavonoids that are found in the roots and leaves of some Chinese medicinal plants and are thought to have an...

  • Article
  • Open Access
67 Citations
12,258 Views
18 Pages

HE4 (WFDC2) Promotes Tumor Growth in Endometrial Cancer Cell Lines

  • Jinping Li,
  • Haibin Chen,
  • Andrea Mariani,
  • Dong Chen,
  • Edward Klatt,
  • Karl Podratz,
  • Ronny Drapkin,
  • Russell Broaddus,
  • Sean Dowdy and
  • Shi-Wen Jiang

15 March 2013

HE4, also known as WFDC2, is a useful biomarker for ovarian cancer when either used alone or in combination with CA125. HE4 is also overexpressed in endometrial cancer (EC), but its function in cancer cells is not clear. In this study, we investigate...

  • Review
  • Open Access
732 Citations
38,458 Views
23 Pages

The Role of Metallothionein in Oxidative Stress

  • Branislav Ruttkay-Nedecky,
  • Lukas Nejdl,
  • Jaromir Gumulec,
  • Ondrej Zitka,
  • Michal Masarik,
  • Tomas Eckschlager,
  • Marie Stiborova,
  • Vojtech Adam and
  • Rene Kizek

15 March 2013

Free radicals are chemical particles containing one or more unpaired electrons, which may be part of the molecule. They cause the molecule to become highly reactive. The free radicals are also known to play a dual role in biological systems, as they...

  • Case Report
  • Open Access
6 Citations
8,751 Views
7 Pages

A Case of Stage III c Ovarian Clear Cell Carcinoma: The Role for Predictive Biomarkers and Targeted Therapies

  • Munmun Rahman,
  • Kentaro Nakayama,
  • Tomoka Ishibashi,
  • Masako Ishikawa,
  • Mohammed Tanjimur Rahman,
  • Hiroshi Katagiri,
  • Atsuko Katagiri,
  • Kouji Iida,
  • Yoshihiro Kikuchi and
  • Kohji Miyazaki

15 March 2013

Ovarian cancer treatment presently does not reflect molecular differences in histologic subtype. Ovarian clear cell carcinoma (OCCC) exhibits several differences in terms of molecular pathogenesis and tumor behavior from the more common, chemosensi...

  • Article
  • Open Access
54 Citations
10,833 Views
16 Pages

Early Exercise Protects against Cerebral Ischemic Injury through Inhibiting Neuron Apoptosis in Cortex in Rats

  • Pengyue Zhang,
  • Yuling Zhang,
  • Jie Zhang,
  • Yi Wu,
  • Jie Jia,
  • Junfa Wu and
  • Yongshan Hu

15 March 2013

Early exercise is an effective strategy for stroke treatment, but the underlying mechanism remains poorly understood. Apoptosis plays a critical role after stroke. However, it is unclear whether early exercise inhibits apoptosis after stroke. The pre...

  • Article
  • Open Access
27 Citations
11,365 Views
16 Pages

PAX2 Expression in Ovarian Cancer

  • Huijuan Song,
  • Suet-Yan Kwan,
  • Daisy I. Izaguirre,
  • Zhifei Zu,
  • Yvonne T. Tsang,
  • Celestine S. Tung,
  • Erin R. King,
  • Samuel C. Mok,
  • David M. Gershenson and
  • Kwong-Kwok Wong

15 March 2013

PAX2 is one of nine PAX genes that regulate tissue development and cellular differentiation in embryos. However, the functional role of PAX2 in ovarian cancer is not known. Twenty-six ovarian cancer cell lines with different histology origins were sc...

  • Review
  • Open Access
49 Citations
14,676 Views
18 Pages

14 March 2013

Intercellular signalling via growth factors plays an important role in controlling cell differentiation and cell movements during the development of multicellular animals. Fibroblast Growth Factor (FGF) signalling induces changes in cellular behaviou...

  • Article
  • Open Access
45 Citations
9,313 Views
14 Pages

Study of Fungal Colonization of Wheat Kernels in Syria with a Focus on Fusarium Species

  • Dima Alkadri,
  • Paola Nipoti,
  • Katharina Döll,
  • Petr Karlovsky,
  • Antonio Prodi and
  • Annamaria Pisi

14 March 2013

Wheat is one of the main crops in Mediterranean countries, and its cultivation has an important role in the Syrian economy. In Syria, Fusarium head blight (FHB) has not been reported so far. Mycological analysis of 48 samples of wheat kernels collect...

  • Article
  • Open Access
14 Citations
7,686 Views
14 Pages

14 March 2013

A molecularly imprinted silica gel sorbent for selective removal of 2-Hydroxybenzoic acid (2-HA) was prepared by a surface imprinting technique with a sol-gel process. The 2-HA molecularly imprinted silica gel (2-HA-MISG) sorbent was evaluated by v...

  • Article
  • Open Access
13 Citations
6,479 Views
12 Pages

14 March 2013

This study aimed to investigate the effects of cyclopamine, a specific inhibitor of Hedgehog signaling pathways, on the chondrogenic differentiation of mesenchymal stem cells (MSCs). During culture, the experimental groups were treated with cyclopami...

  • Review
  • Open Access
306 Citations
23,471 Views
37 Pages

Structure, Function and Networks of Transcription Factors Involved in Abiotic Stress Responses

  • Søren Lindemose,
  • Charlotte O'Shea,
  • Michael Krogh Jensen and
  • Karen Skriver

13 March 2013

Transcription factors (TFs) are master regulators of abiotic stress responses in plants. This review focuses on TFs from seven major TF families, known to play functional roles in response to abiotic stresses, including drought, high salinity, high o...

  • Article
  • Open Access
37 Citations
8,841 Views
20 Pages

Effect of Different Phospholipids on α-Secretase Activity in the Non-Amyloidogenic Pathway of Alzheimer’s Disease

  • Marcus O. W. Grimm,
  • Viola J. Haupenthal,
  • Tatjana L. Rothhaar,
  • Valerie C. Zimmer,
  • Sven Grösgen,
  • Benjamin Hundsdörfer,
  • Johannes Lehmann,
  • Heike S. Grimm and
  • Tobias Hartmann

13 March 2013

Alzheimer’s disease (AD) is characterized by extracellular accumulation of amyloid-β peptide (Aβ), generated by proteolytic processing of the amyloid precursor protein (APP) by β- and γ-secretase. Aβ generation is inhibited when the initial ectodomai...

  • Article
  • Open Access
16 Citations
10,457 Views
21 Pages

A Rice Immunophilin Gene, OsFKBP16-3, Confers Tolerance to Environmental Stress in Arabidopsis and Rice

  • Hyun Ji Park,
  • Sang Sook Lee,
  • Young Nim You,
  • Dae Hwa Yoon,
  • Beom-Gi Kim,
  • Jun Cheul Ahn and
  • Hye Sun Cho

13 March 2013

The putative thylakoid lumen immunophilin, FKBP16-3, has not yet been characterized, although this protein is known to be regulated by thioredoxin and possesses a well-conserved CxxxC motif in photosynthetic organisms. Here, we characterized rice OsF...

  • Article
  • Open Access
36 Citations
7,465 Views
18 Pages

12 March 2013

The turbot (Scophthalmus maximus) is a commercially valuable flatfish and one of the most promising aquaculture species in Europe. Two transcriptome 454-pyrosequencing runs were used in order to detect Single Nucleotide Polymorphisms (SNPs) in genes...

  • Article
  • Open Access
28 Citations
7,478 Views
11 Pages

Synthesis of Thieno[2,3-b]thiophene Containing Bis-Heterocycles-Novel Pharmacophores

  • Yahia Nasser Mabkhot,
  • Assem Barakat,
  • Abdullah Mohammed Al-Majid and
  • Muhammad Iqbal Choudhary

12 March 2013

Thioenethiophene derivatives represent an important class of compounds with diverse biological activities. We describe here the synthesis of a new series of thieno[2,3-b]thiophene containing bis-heterocyclic compounds 37. All the compounds were eva...

  • Article
  • Open Access
11 Citations
6,918 Views
11 Pages

9G DNAChip Technology: Self-Assembled Monolayer (SAM) of ssDNA for Ultra-Sensitive Detection of Biomarkers

  • Satish Balasaheb Nimse,
  • Keum-Soo Song,
  • Junghoon Kim,
  • Danishmalik Rafiq Sayyed and
  • Taisun Kim

12 March 2013

A 9G DNAChip obtained by allowing the formation of a self-assembled monolayer (SAM) of oligonucleotides appended with nine consecutive guanines on the chip surface has been applied in the detection of biomarkers. Using a 9G DNAChip, biomarker in the...

  • Review
  • Open Access
64 Citations
13,052 Views
16 Pages

12 March 2013

The Arabidopsis SOS2 family of twenty-six protein kinases (CIPKs), their interacting activators, the SOS3 family of ten calcium-binding proteins (CBLs) and protein phosphatases type 2C (PP2C), function together in decoding calcium signals elicited by...

  • Article
  • Open Access
86 Citations
15,425 Views
15 Pages

Batch and Continuous Ultrasound Assisted Extraction of Boldo Leaves (Peumus boldus Mol.)

  • Loïc Petigny,
  • Sandrine Périno-Issartier,
  • Joël Wajsman and
  • Farid Chemat

12 March 2013

Vegetal extracts are widely used as primary ingredients for various products from creams to perfumes in the pharmaceutical, nutraceutic and cosmetic industries. Having concentrated and active extract is essential, as the process must extract as much...

  • Article
  • Open Access
14 Citations
7,662 Views
10 Pages

12 March 2013

Selective photocrosslinking reaction between 3-cyanovinylcarbazole nucleoside (CNVK) and 5-methylcytosine (mC), which is known as epigenetic modification in genomic DNA, was developed. The reaction was completely finished within 5 s of 366 nm irradia...

  • Communication
  • Open Access
5 Citations
6,429 Views
9 Pages

12 March 2013

The alternating magnetic field was discovered to be capable of inducing the fibrous aggregation of magnetic nanoparticles. However, this anisotropic aggregation may be unfavorable for practical applications. Here, we reported that the adsorption of B...

  • Article
  • Open Access
20 Citations
11,351 Views
22 Pages

12 March 2013

The mechanism of the chemical reaction of H2O with three stabilized Criegee intermediates (stabCI-OO, stabCI-CH3-OO and stabCIx-OO) produced via the limonene ozonolysis reaction has been investigated using ab initio and DFT (Density Functional Theory...

  • Article
  • Open Access
22 Citations
6,664 Views
11 Pages

12 March 2013

Lung cancer is the most common cause of cancer-related death. Nonetheless, a decrease in overall incidence and mortality has been observed in the last 30 years due to prevention strategies and improvements in the use of chemotherapeutic agents. In re...

  • Review
  • Open Access
40 Citations
13,086 Views
25 Pages

12 March 2013

The mammalian circadian system is composed of numerous oscillators, which gradually differ with regard to their dependence on the pacemaker, the suprachiasmatic nucleus (SCN). Actions of melatonin on extra-SCN oscillators represent an emerging field....

  • Article
  • Open Access
108 Citations
9,008 Views
11 Pages

Naringin Enhances CaMKII Activity and Improves Long-Term Memory in a Mouse Model of Alzheimer’s Disease

  • Dong-Mei Wang,
  • Ya-Jun Yang,
  • Li Zhang,
  • Xu Zhang,
  • Fei-Fei Guan and
  • Lian-Feng Zhang

11 March 2013

The Amyloid-β (Aβ)-induced impairment of hippocampal synaptic plasticity is an underlying mechanism of memory loss in the early stages of Alzheimer's disease (AD) in human and mouse models. The inhibition of the calcium/calmodulin-dependent protein k...

  • Review
  • Open Access
15 Citations
8,010 Views
21 Pages

MicroRNAs Involved in Anti-Tumour Immunity

  • Hong W. H. Yu,
  • Daniel M. Y. Sze and
  • William C. S. Cho

11 March 2013

MicroRNAs (miRNAs) are a category of small RNAs that constitute a new layer of complexity to gene regulation within the cell, which has provided new perspectives in understanding cancer biology. The deregulation of miRNAs contributes critically to th...

  • Article
  • Open Access
251 Citations
13,944 Views
25 Pages

Structure-Based Search for New Inhibitors of Cholinesterases

  • Marek Bajda,
  • Anna Więckowska,
  • Michalina Hebda,
  • Natalia Guzior,
  • Christoph A. Sotriffer and
  • Barbara Malawska

11 March 2013

Cholinesterases are important biological targets responsible for regulation of cholinergic transmission, and their inhibitors are used for the treatment of Alzheimer’s disease. To design new cholinesterase inhibitors, of different structure-based des...

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Int. J. Mol. Sci. - ISSN 1422-0067