Journal Description
International Journal of Molecular Sciences
International Journal of Molecular Sciences
is an international, peer-reviewed, open access journal providing an advanced forum for biochemistry, molecular and cell biology, molecular biophysics, molecular medicine, and all aspects of molecular research in chemistry, and is published semimonthly online by MDPI. The Australian Society of Plant Scientists (ASPS), Epigenetics Society, European Chitin Society (EUCHIS), Spanish Society for Cell Biology (SEBC) and others are affiliated with IJMS and their members receive a discount on the article processing charges.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubMed, PMC, MEDLINE, Embase, CAPlus / SciFinder, and other databases.
- Journal Rank: JCR - Q1 (Biochemistry and Molecular Biology) / CiteScore - Q1 (Organic Chemistry)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 20.5 days after submission; acceptance to publication is undertaken in 2.6 days (median values for papers published in this journal in the first half of 2025).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
- Testimonials: See what our editors and authors say about IJMS.
- Companion journals for IJMS include: Biophysica, Stresses, Lymphatics and SynBio.
Impact Factor:
4.9 (2024);
5-Year Impact Factor:
5.7 (2024)
Latest Articles
Discovery of a Novel Antithrombotic Cystine Knot Peptide from Spider Venom Gland Transcriptome
Int. J. Mol. Sci. 2025, 26(20), 10154; https://doi.org/10.3390/ijms262010154 (registering DOI) - 19 Oct 2025
Abstract
The development of effective anticoagulants remains a critical need in modern medicine, particularly for preventing and treating thromboembolic disorders, such as arterial thrombosis and deep vein thrombosis (DVT), as well as complications like ischemic stroke. This study identifies a cysteine-knotted peptide GC38 (sequence:
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The development of effective anticoagulants remains a critical need in modern medicine, particularly for preventing and treating thromboembolic disorders, such as arterial thrombosis and deep vein thrombosis (DVT), as well as complications like ischemic stroke. This study identifies a cysteine-knotted peptide GC38 (sequence: GCSGKGARCAPSKCCSGLSCGRHGGNMYKSCEWNWKTG) derived from the venom gland transcriptome of the Macrothele sp. spider, which exerts thrombus-inhibitory effects by potentiating activated protein C (APC) activity. In vitro assays reveal that GC38 enhances APC activity, prolongs plasma clotting time, and shows no significant cytotoxicity or hemolytic activity. Mechanistically, GC38 interacts allosterically with APC; biolayer interferometry (BLI) confirms this direct interaction, with a dissociation constant KD of 6.16 μM. Additionally, three in vivo thrombosis models (FeCl3-induced arterial occlusion, stasis-induced DVT, and cortical photothrombotic stroke) consistently demonstrated that GC38 was effective in alleviating thrombus formation, with tail-bleeding assays confirming its low hemorrhagic risk. Collectively, our findings position GC38 as a pioneering spider venom-derived lead molecule that addresses dual arterial and venous antithrombotic actions. This opens new avenues for developing spider venom-derived peptides as therapeutic agents targeting intravascular coagulation in arteries and veins.
Full article
(This article belongs to the Special Issue Molecular Mechanisms of Animal Toxins, Venoms and Antivenoms 2.0)
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Open AccessArticle
Parameters of Micro- and Macrocirculation in Young Uncomplicated Type 1 Diabetic Patients—The Role of Metabolic Memory
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Jolanta Neubauer-Geryk, Małgorzata Myśliwiec, Katarzyna Zorena and Leszek Bieniaszewski
Int. J. Mol. Sci. 2025, 26(20), 10156; https://doi.org/10.3390/ijms262010156 (registering DOI) - 18 Oct 2025
Abstract
In the current study, we focus on analyzing the relationship between changes in micro- and macrocirculation and different stages of metabolic memory. We hypothesized that early poor glycemic control induces lasting endothelial changes detectable in pediatric type 1 diabetes (T1D) microcirculation. We assessed
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In the current study, we focus on analyzing the relationship between changes in micro- and macrocirculation and different stages of metabolic memory. We hypothesized that early poor glycemic control induces lasting endothelial changes detectable in pediatric type 1 diabetes (T1D) microcirculation. We assessed microcirculation structure and function using capillaroscopy, transcutaneous oxygen pressure (TcPO2), and optical coherence tomography (OCT). We evaluated macrovascular circulation using pulsatility index (PI), ankle-brachial index (ABI) and pulse pressure (PP). We also examined the relationship between circulation parameters, the age at onset, and diabetes duration. The study included 67 patients with uncomplicated type 1. We divided all patients into four groups based on their HbA1c levels at T1D onset and their average HbA1c after one and two years. We assessed the concentrations of TNF-α, IL-35, IL-4, IL-10, IL-18, IL-12, serum angiogenin, VEGF, sVCAM-1, ICAM-1, sP-Selectin, AGEs, and sRAGE. We compared subgroups with different levels of metabolic memory but comparable T1D duration and age at diagnosis. Micro- and macrovascular parameters were similar between the groups. Our comparison of subgroups with identical metabolic memory but different durations and ages at diagnosis revealed clear differences. The subgroup with a shorter T1D duration showed higher capillary density and a smaller inter-capillary distance compared to those with a longer diabetes duration. This subgroup with shorter duration had significantly lower AGE levels and a reduced TNF-α/IL-35 ratio, along with higher levels of IL-35, IL-4, and IL-12, compared to the longer-duration group. Our findings indicate that in youths with uncomplicated T1D, disease duration—not metabolic memory—plays a dominant role in early microvascular alterations.
Full article
(This article belongs to the Special Issue Molecular Research on Type 1 Diabetes and Its Complications: 2nd Edition)
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Open AccessArticle
Genetic Dissection of Plant Height Variation Between the Parental Lines of the Elite Japonica Hybrid Rice ‘Shenyou 26’
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Bin Sun, Xiaorui Ding, Kaizhen Xie, Xueqing Zhang, Can Cheng, Yuting Dai, Anpeng Zhang, Jihua Zhou, Fuan Niu, Rongjian Tu, Yue Qiu, Zhizun Feng, Bilian Hu, Chenbing Shao, Hongyu Li, Tianxing Shen, Liming Cao and Huangwei Chu
Int. J. Mol. Sci. 2025, 26(20), 10155; https://doi.org/10.3390/ijms262010155 (registering DOI) - 18 Oct 2025
Abstract
Plant height is a key agronomic trait influencing both seed production and yield in hybrid rice. In the elite japonica hybrid ‘Shenyou 26’, optimal plant height differences between the restorer line (‘Shenhui 26’) and the male sterile line (‘Shen 9A’) are critical for
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Plant height is a key agronomic trait influencing both seed production and yield in hybrid rice. In the elite japonica hybrid ‘Shenyou 26’, optimal plant height differences between the restorer line (‘Shenhui 26’) and the male sterile line (‘Shen 9A’) are critical for efficient pollination. In this study, we dissected the genetic basis of plant height variation using a doubled haploid (DH) population derived from ‘Shenyou 26’. Multi-environment phenotyping and QTL mapping identified seven QTLs associated with plant height, among which qPH1.1 and qPH9.1 were validated. qPH1.1 co-localized with the semi-dwarf gene SD1, and ‘Shen 9A’ carries a rare SD1-EQH allele that potentially confers reduced height relative to the SD1-EQ allele in ‘Shenhui 26’. qPH9.1 also contributed significantly to plant height variation, with the Shenhui26 allele increasing plant height in backcross validation. These findings indicate that plant height variation in ‘Shenyou 26’ is controlled by multiple loci, including SD1 allelic variants and other complementary QTLs, providing valuable resources for fine-tuning plant architecture in rice breeding.
Full article
(This article belongs to the Special Issue Rice Molecular Breeding and Genetics: 3rd Edition)
Open AccessArticle
High Proteolytic and Collagenolytic Activity in an Environmental Vibrio Isolate: Insights into Tissue-Degrading Virulence Factors
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Monica Salamone, Aldo Nicosia, Giulio Ghersi, Angela Cuttitta, Paola Quatrini and Marcello Tagliavia
Int. J. Mol. Sci. 2025, 26(20), 10153; https://doi.org/10.3390/ijms262010153 (registering DOI) - 18 Oct 2025
Abstract
Vibrio is a genus of ubiquitous aquatic bacteria that includes numerous pathogenic species. Their remarkable genomic plasticity and rapid evolution make them of particular interest from both clinical and ecological perspectives. Successful infection by Vibrio species often relies on multiple virulence factors, including
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Vibrio is a genus of ubiquitous aquatic bacteria that includes numerous pathogenic species. Their remarkable genomic plasticity and rapid evolution make them of particular interest from both clinical and ecological perspectives. Successful infection by Vibrio species often relies on multiple virulence factors, including secreted enzymes. Here, we report the characterization of a novel environmental Vibrio strain isolated from a wild octopus that developed fulminant septicaemia accompanied by widespread soft tissue lysis. These severe symptoms prompted a detailed investigation into the bacterium’s identity and enzymatic profile, focused on proteases as potential virulence factors. Multi-locus sequence analysis placed the isolate within the Harveyi clade but revealed no perfect match to known strains, supporting its designation as a novel strain. Biochemical assays demonstrated strong proteolytic—including collagenolytic—activity, which makes this strain a promising source of enzymes for biotechnological applications.
Full article
(This article belongs to the Special Issue Current Advances and Perspectives in Microbial Genetics and Genomics)
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Open AccessArticle
Dietary Exposure to 2,2′,4,4′-Tetrabromodiphenyl Ether (BDE-47) Causes Inflammation in the Liver of Common Carp (Cyprinus carpio) and Affects Lipid Metabolism by Interfering with Steroid Hormone Biosynthesis Pathways
by
Shuhuang Chen, Nian Han, Yujie Huang, Huimin Sun, Youlian Liu, Defang Chen, Zhiqiong Li and Xin Zhang
Int. J. Mol. Sci. 2025, 26(20), 10152; https://doi.org/10.3390/ijms262010152 (registering DOI) - 18 Oct 2025
Abstract
2,2′,4,4′-tetrabromodiphenyl ether (BDE-47) is a common environmental contaminant and widely detected in aquatic surroundings, while only a few reports exist on the hazard mechanism in economic aquatic animals. It has been shown that 40 and 4000 ng/g of BDE-47 dietary exposure over 42
[...] Read more.
2,2′,4,4′-tetrabromodiphenyl ether (BDE-47) is a common environmental contaminant and widely detected in aquatic surroundings, while only a few reports exist on the hazard mechanism in economic aquatic animals. It has been shown that 40 and 4000 ng/g of BDE-47 dietary exposure over 42 days significantly increased the levels of blood triglycerides, glucose, and liver glycogen in carp (Cyprinus carpio). Tissue observations showed that BDE-47 resulted in vacuolation, atrophy, and fat deposition in hepatocytes. Combined metabolomic and transcriptomic analyses revealed that BDE-47 affected the inflammatory response and the biosynthesis of steroid hormones. This was further confirmed by gene expression related to inflammatory factors (il-10, tnf-α, il-1β, and tgf-β1), lipid metabolism (acc, fas, srebp, rxr, atgl, hsl, and lpl), and the steroid hormone biosynthetic pathway (11bhsd, hsd3b, and star). Thus, BDE-47 affects liver inflammatory response and lipid deposition through steroid hormone biosynthesis in carp. This helps us to understand how BDE-47 dietary exposure impacts inflammation and lipid metabolism in fish, which affects the health of aquaculture and has potential risks to human health.
Full article
(This article belongs to the Special Issue Advanced Research on the Physiology and Toxicology of Aquatic Animals)
Open AccessArticle
Novel Hydroxyl-Functional Aliphatic CO2-Based Polycarbonates: Synthesis and Properties
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Nikita M. Maximov, Sergey A. Rzhevskiy, Andrey F. Asachenko, Anna V. Plutalova, Elena S. Trofimchuk, Evgenii A. Lysenko, Olga V. Shurupova, Ekaterina S. Tarasova, Elena V. Chernikova and Irina P. Beletskaya
Int. J. Mol. Sci. 2025, 26(20), 10151; https://doi.org/10.3390/ijms262010151 (registering DOI) - 18 Oct 2025
Abstract
A series of novel functional polycarbonates, specifically poly(solketal glycidyl ether carbonate-co-propylene carbonate)s with varying compositions, were synthesized through the ring-opening copolymerization of solketal glycidyl ether, propylene oxide, and carbon dioxide. The reaction was catalyzed by rac-(salcy)CoIIIX complexes with bis(triphenylphosphine)iminium
[...] Read more.
A series of novel functional polycarbonates, specifically poly(solketal glycidyl ether carbonate-co-propylene carbonate)s with varying compositions, were synthesized through the ring-opening copolymerization of solketal glycidyl ether, propylene oxide, and carbon dioxide. The reaction was catalyzed by rac-(salcy)CoIIIX complexes with bis(triphenylphosphine)iminium salts as co-catalysts, achieving high selectivity. The resulting terpolymers exhibited number-average molecular weights ranging from 2 × 104 to 1 × 105 and a narrow, bimodal molecular weight distribution, with dispersities of 1.02–1.07 for each mode. Interestingly, the addition of a small amount of water to the reaction mixture yielded a terpolymer with a unimodal molecular weight distribution and a dispersity of 1.11. Subsequent acidic hydrolysis of the solketal protective groups produced poly(glyceryl glycerol carbonate-co-propylene carbonate). All terpolymers were amorphous, with Tg near or below room temperature. The hydroxyl-functional polycarbonates underwent cyclodepolymerization under milder conditions compared to polycarbonates with protected hydroxyl groups.
Full article
(This article belongs to the Section Macromolecules)
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Human Testicular Tissue Digestion, Testicular Cell Selection, and Downstream Characterization for Reproductive Purposes: A Scoping Review
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Sven De Windt, Neguine Nekounazar Azad and Christine Wyns
Int. J. Mol. Sci. 2025, 26(20), 10150; https://doi.org/10.3390/ijms262010150 (registering DOI) - 18 Oct 2025
Abstract
Fertility preservation and restoration using cryo-banked prepubertal testicular tissue is a pivotal part of the childhood hematological cancer care pathway. Estimations indicate that one in 900–1400 young adults is a childhood cancer survivor, underlying the urge to develop fertility restoration protocols as some
[...] Read more.
Fertility preservation and restoration using cryo-banked prepubertal testicular tissue is a pivotal part of the childhood hematological cancer care pathway. Estimations indicate that one in 900–1400 young adults is a childhood cancer survivor, underlying the urge to develop fertility restoration protocols as some of the patients have reached the age to father their own genetic child. While it has been reported that 39% of patients present cancer cells in their testes, no efficient decontamination technique has been identified to circumvent cancer reintroduction after autologous testicular cell transplantation. Obtaining single-cell suspensions and selecting only testicular cells might be an option. In this review, mechanical dissociation/enzymatic digestion protocols applied to human testicular tissue, as well as selection and enrichment strategies, and their outcome will be presented and discussed. While the literature revealed a plethora of mechanical dissociation/enzymatic digestion protocols, testicular tissue characteristics are often missing, precluding the comparison of protocols and their outcomes. Downstream selection and enrichment strategies showed promising results with flow cytometry reaching fractions with the highest purity. Future studies should focus on investigating digestion outcomes to elucidate potential influences on both the cell type-specific viability and the cell-to-cell interactions necessary for cell proliferation and differentiation of selected or enriched testicular cell types. Such research outputs will then also be crucial for further progress in in vitro spermatogenesis from testicular cell suspensions as another option for patients that banked testicular tissue at the time of a hematological cancer.
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(This article belongs to the Section Biochemistry)
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Open AccessArticle
Facile Synthesis of N-vinylindoles via Knoevenagel Condensation: Molecular Features and Biological Activities
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Anita Kornicka, Justyna Stefanowicz-Hajduk, Katarzyna Turecka, Christophe Furman, Maria Gdaniec and Łukasz Balewski
Int. J. Mol. Sci. 2025, 26(20), 10149; https://doi.org/10.3390/ijms262010149 (registering DOI) - 18 Oct 2025
Abstract
N-vinylindoles have attracted attention for their promising role in medicinal chemistry. Therefore, developing new synthetic methods that enable access to diverse functionalized N-vinylindoles with potential pharmacological properties is highly valuable. 1-[2-aryl-1-(4,5-dihydro-1H-imidazol-2-yl)vinyl]-1H-indoles 2a-i were prepared via
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N-vinylindoles have attracted attention for their promising role in medicinal chemistry. Therefore, developing new synthetic methods that enable access to diverse functionalized N-vinylindoles with potential pharmacological properties is highly valuable. 1-[2-aryl-1-(4,5-dihydro-1H-imidazol-2-yl)vinyl]-1H-indoles 2a-i were prepared via Knoevenagel condensation promoted by 1H-benzotriazole, and characterized by IR, NMR, and MS spectroscopic data as well as a single-crystal X-ray diffraction-based study of the representative derivative 2g. The obtained compounds 2a-i were screened for their cytotoxic potency against human cancer cell lines (HeLa, SKOV-3, AGS) and non-cancerous cell line (HaCaT) using the MTT assay. Additional apoptosis analysis and cell cycle assay on SKOV-3 cells were conducted. Their antimicrobial activity was determined using reference strains of S. aureus, E. coli, C. albicans, and C. glabrata. The potent inhibitory activity against AGE2-BSA/sRAGE interaction of selected N-vinylindoles 2b, 2d-f, and 2h-i was evaluated by ELISA assay. A facile approach has been developed for the synthesis of a novel class of N-vinylindoles. The preliminary structure–activity considerations indicated that the presence of substituents R, such as 4-bromophenyl (compound 2f) or 2-naphthyl (compound 2i) is optimal for anticancer activity and the AGE2-BSA/sRAGE interaction inhibition. The most prominent (Z)-1-[1-(4,5-dihydro-1H-imidazol-2-yl)-2-(naphthalen-2-yl)vinyl]-1H-indole (2i) was found to strongly arrest cell cycle in the SKOV-3 cell line in the subG0 phase, inducing apoptosis. Notably, derivative 2i also exhibited the highest activity against S. aureus and C. albicans strains within the tested series. These findings highlight the substantial potential of N-vinylindole derivative 2i as a lead compound for the development of anticancer drugs with additional inhibitory activity on the AGE/RAGE interaction.
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(This article belongs to the Special Issue Advances in the Synthesis and Study of Novel Bioactive Molecules)
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Structure–Function Insights into Frog Skin Peptides Reveal Potent Inhibition of West Nile Virus Entry
by
Carla Zannella, Annalisa Chianese, Rosa Giugliano, Valeria Stefanizzi, Alessandra Monti, Nunzianna Doti, Emilia Palazzotto, Floriana Bonura, Giovanni M. Giammanco, Antonio Mastino, Simona De Grazia, Francesca Marino-Merlo, Massimiliano Galdiero and Anna De Filippis
Int. J. Mol. Sci. 2025, 26(20), 10148; https://doi.org/10.3390/ijms262010148 (registering DOI) - 18 Oct 2025
Abstract
Background. Over the past five decades, the emergence and re-emergence of multiple flaviviruses have triggered significant global outbreaks, posing serious threats to public health. Among them, West Nile virus (WNV) is a major cause of mosquito-borne illness, typically presenting as an acute systemic
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Background. Over the past five decades, the emergence and re-emergence of multiple flaviviruses have triggered significant global outbreaks, posing serious threats to public health. Among them, West Nile virus (WNV) is a major cause of mosquito-borne illness, typically presenting as an acute systemic febrile disease and, in some cases, progressing to the central nervous system involvement. No specific antiviral therapies or effective vaccines are available for WNV infections. In this context, antimicrobial peptides (AMPs) with antiviral properties—known as antiviral peptides (AVPs)—have gained attention as potential therapeutic agents due to their ability to interfere with various stages of the viral life cycle. Methods. Two frog-derived melittin-like peptides, AR-23 and RV-23, were synthesized and purified, and their hemolytic activity was assessed on human erythrocytes. Antiviral activity against WNV was evaluated in Vero cells using cytopathic effect reduction assays and real-time PCR quantification of viral RNA. Time-of-addition experiments were conducted to explore the stage of viral inhibition. In silico molecular docking studies were performed to examine interactions between the peptides and the viral E glycoprotein. Results. Both peptides displayed strong antiviral effects during the early phases of infection, likely through direct interaction with viral particles and disruption of virus–host interactions. Conclusions. Compared with melittin, AR-23 and RV-23 showed greater efficacy and lower cytotoxicity, highlighting their potential as promising therapeutic candidates for flavivirus infections.
Full article
(This article belongs to the Special Issue Antimicrobial and Antiviral Peptides: 2nd Edition)
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Open AccessEditorial
Special Issue “Synthesis, Properties and Applications of Polymers”
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Dmitriy A. Sapozhnikov
Int. J. Mol. Sci. 2025, 26(20), 10147; https://doi.org/10.3390/ijms262010147 (registering DOI) - 18 Oct 2025
Abstract
This century, similarly to the twentieth century, is rightfully called the “Plastic Age” [...]
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(This article belongs to the Special Issue Synthesis, Properties and Applications of Polymers)
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The Role of Alternative Splicing in Polyploids in Response to Abiotic Stress
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Faiza Fatima and Mi-Jeong Yoo
Int. J. Mol. Sci. 2025, 26(20), 10146; https://doi.org/10.3390/ijms262010146 (registering DOI) - 18 Oct 2025
Abstract
Alternative splicing (AS) is a crucial post-transcriptional regulatory mechanism that enhances transcriptomic and proteomic diversity by generating multiple mRNA isoforms from a single gene. In plants, AS plays a central role in modulating growth, development, and stress responses. We summarize the prevalence and
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Alternative splicing (AS) is a crucial post-transcriptional regulatory mechanism that enhances transcriptomic and proteomic diversity by generating multiple mRNA isoforms from a single gene. In plants, AS plays a central role in modulating growth, development, and stress responses. We summarize the prevalence and functional roles of AS in plant development and stress adaptation, highlighting mechanisms that link AS to hormone signaling, RNA surveillance, and epigenetic regulation. Polyploid crops, with their duplicated genomes, exhibit expanded AS complexity, contributing to phenotypic plasticity, stress tolerance, and adaptive evolution. Thus, this review synthesizes current knowledge on AS in plants, with a focus on three economically important polyploid crops—Brassica napus, Gossypium hirsutum, and Triticum aestivum. We also discuss how sub genome interactions shape diversity in polyploids and influence trait variation. Despite significant advances enabled by high-throughput sequencing, mechanistic studies that directly link specific AS events to phenotypic outcomes remain limited. Understanding how polyploidy reprograms AS and how isoform variation contributes to stress adaptation will be critical for harnessing AS in crop improvement.
Full article
(This article belongs to the Special Issue Molecular Mechanisms of Plant Abiotic Stress Tolerance: 2nd Edition)
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Open AccessReview
Molecular Framework of the Onset and Progression of Skeletal Muscle Aging
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Thomas Horlem, Stephanie Rubianne Silva Carvalhal, Sandro José Ribeiro Bonatto and Luiz Cláudio Fernandes
Int. J. Mol. Sci. 2025, 26(20), 10145; https://doi.org/10.3390/ijms262010145 (registering DOI) - 18 Oct 2025
Abstract
Aging is a multifactorial process that progressively disrupts cellular and tissue homeostasis, affecting all organ systems at distinct rates and predisposing individuals to chronic diseases such as cancer, type II diabetes, and sarcopenia. Among these systems, skeletal muscle plays a central role in
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Aging is a multifactorial process that progressively disrupts cellular and tissue homeostasis, affecting all organ systems at distinct rates and predisposing individuals to chronic diseases such as cancer, type II diabetes, and sarcopenia. Among these systems, skeletal muscle plays a central role in healthspan decline, yet the precise onset of its deterioration remains unclear. Most studies emphasize late-life models, overlooking the transitional phase of middle age, when initial alterations emerge. Evidence indicates that middle-aged muscle exhibits aberrant metabolism, impaired insulin sensitivity, and an early, gradual reduction in mass, suggesting that decline begins long before overt sarcopenia. This narrative review synthesizes current findings on linear and non-linear molecular biomarkers associated with the onset of skeletal muscle aging, aiming to improve early detection of muscular alterations and support the development of interventions that delay or prevent functional decline.
Full article
(This article belongs to the Special Issue Molecular and Neuromuscular Mechanisms in Skeletal Muscle Aging, 2nd Edition)
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Open AccessArticle
Genome-Wide Characterization of the MDS Gene Family in Gossypium Reveals GhMDS11 as a Key Mediator of Cold Stress Response
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Xuehan Zhu, Ahmad Haris Khan, Yihao Liu, Allah Madad, Faren Zhu, Junwei Wang, Ganggang Zhang, Fei Wang, Zihan Li, Shandang Shi and Hongbin Li
Int. J. Mol. Sci. 2025, 26(20), 10144; https://doi.org/10.3390/ijms262010144 (registering DOI) - 18 Oct 2025
Abstract
Cotton’s susceptibility to low temperatures makes it a crucial raw resource for the world’s textile industry, yet its cultivation in temperate regions is severely limited. Although plant growth and stress responses depend on receptor-like kinases (RLKs), the functions of the MEDOS (MDS
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Cotton’s susceptibility to low temperatures makes it a crucial raw resource for the world’s textile industry, yet its cultivation in temperate regions is severely limited. Although plant growth and stress responses depend on receptor-like kinases (RLKs), the functions of the MEDOS (MDS) gene family, which includes genes that encode RLK, are still poorly understood in cotton. In this study, we conducted a genome-wide analysis to systematically investigate the distribution of MDS gene family members in four cotton species. Phylogenetic analysis identified five evolutionary clades of the MDS gene family in cotton. The role of promoter cis-acting elements in hormone signaling and abiotic stress responses was suggested by analysis. Collinearity analysis demonstrated that segmental duplication was the primary driver of family expansion. Gene expression profiling showed that GhMDS11 was significantly upregulated under cold stress. Functional validation through silencing GhMDS11 compromised cold tolerance, confirming its role in stress adaptation. Comparative transcriptome study of silenced plants demonstrated substantial enrichment in pathways associated with hormone signal transduction and fatty acid breakdown. It is speculated that the chain of “hormone synthesis → signal transduction → secondary metabolism” completely presents the transcriptional regulation network and functional response of plants after receptor kinase VIGS. Silencing the GhMDS11 gene in cotton initiates regulatory effects through hormone synthesis, which is amplified via a signal transduction cascade, ultimately affecting secondary metabolism. This comprehensive pathway clearly demonstrates the downstream transcriptional reprogramming and functional changes. This work thoroughly examined the evolutionary traits of the MDS family across four cotton species and clarified the functional and molecular processes of GhMDS11 in improving low-temperature tolerance, laying a solid foundation for further clarifying multidimensional regulatory networks and breeding cold-resistant cotton materials. Simultaneously, our findings pave the way for future research to develop molecular markers, which could potentially shorten the breeding cycle and facilitate the targeted enhancement of cold tolerance in cotton.
Full article
(This article belongs to the Special Issue Molecular Breeding for Abiotic Stress Tolerance in Crops (Second Edition))
Open AccessReview
The Microbiome as a Protagonist of Xylophagous Insects in Adaptation to Environmental Conditions and Climate Change
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Alexander Kuprin and Vladislava Baklanova
Int. J. Mol. Sci. 2025, 26(20), 10143; https://doi.org/10.3390/ijms262010143 (registering DOI) - 18 Oct 2025
Abstract
Xylophagous insects represent a diverse group of species whose life cycles are trophically associated with wood at various stages of decomposition. In forest ecosystems, they play a pivotal role in wood degradation and biogeochemical nutrient cycling. Their remarkable adaptation to feeding on structurally
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Xylophagous insects represent a diverse group of species whose life cycles are trophically associated with wood at various stages of decomposition. In forest ecosystems, they play a pivotal role in wood degradation and biogeochemical nutrient cycling. Their remarkable adaptation to feeding on structurally complex and nutrient-poor woody substrates has been largely mediated by long-term symbiotic interactions with gut microbiota. This review synthesizes current knowledge on the molecular and ecological mechanisms underlying insect–microbiota interactions, with particular attention paid to the impact of environmental stressors—including elevated temperature, shifts in moisture regimes, and pollution—on microbial community structure and host adaptive responses. We critically evaluate the strength of evidence linking climate-driven microbiome shifts to functional consequences for the host and the ecosystem. The ecological implications of microbiota restructuring, such as impaired wood decomposition, decreased disease resistance, facilitation of xylophagous species spread, and alterations in key biotic interactions within forest biocenoses, are discussed. Particular emphasis is placed on the integration of multi-omics technologies and functional assays for a deeper, mechanistic understanding of microbiota roles. We also assess the potential and limitations of microbiome-based approaches for insect population management, with the overall goal of maintaining and enhancing the resilience of forest ecosystems under ongoing climate change.
Full article
(This article belongs to the Special Issue Microbial Interactions with Insect Hosts: Mechanisms, Evolution and Ecological Implications)
Open AccessReview
Innovative Therapeutic Approaches Targeting Obesity: Can Flavonoids Improve the Efficacy of Anti-Obesogenic Drugs?
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Emanuele-Salvatore Scarpa, Stefano Amatori, Giovanni Caprioli, Filippo Maggi, Gianluca Moroncini, Giancarlo Balercia and Gilberta Giacchetti
Int. J. Mol. Sci. 2025, 26(20), 10142; https://doi.org/10.3390/ijms262010142 (registering DOI) - 18 Oct 2025
Abstract
Obesity is a chronic, multifactorial metabolic disease associated with various factors such as insulin resistance, increased adipogenesis, induction of gluconeogenesis, epigenetic mechanisms, chronic inflammatory state, and oxidative stress. Anti-obesity drugs such as Semaglutide and Tirzepatide are currently used in therapies for obese patients
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Obesity is a chronic, multifactorial metabolic disease associated with various factors such as insulin resistance, increased adipogenesis, induction of gluconeogenesis, epigenetic mechanisms, chronic inflammatory state, and oxidative stress. Anti-obesity drugs such as Semaglutide and Tirzepatide are currently used in therapies for obese patients and exert remarkable anti-obesogenic effects, determining weight loss and inhibition of insulin resistance. The impairment of the adipogenesis process and the inhibition of the differentiation of human bone marrow mesenchymal stem cells into adipocytes should also be considered to improve the therapeutic strategies for obesity. Notably, the ability of several flavonoids to inhibit adipogenesis has been described. Flavonoids are the most abundant polyphenols in the human diet and exhibit a wide range of biological properties, including antioxidant and anti-inflammatory effects. Furthermore, many flavonoids can modulate the activity of enzymes involved in epigenetic mechanisms, which play a crucial role in obesity development. The purpose of this review is the identification of those flavonoids able to exert anti-adipogenic and anti-obesity effects in both in vitro and in vivo experimental models, with the aim of combining these natural molecules, as adjuvants, with anti-obesogenic drugs to develop innovative therapeutic approaches for the treatment of obesity pathology.
Full article
(This article belongs to the Special Issue Innovative Therapeutic Approaches to Endocrine Disorders)
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Open AccessArticle
Utility of Serum HBV RNA Measurement During Nucleoside/Nucleotide Analog Therapy in Chronic Hepatitis B Patients
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Keiichi Hiraoka, Masataka Tsuge, Michihiko Kawahara, Hatsue Fujino, Yasutoshi Fujii, Atsushi Ono, Eisuke Murakami, Tomokazu Kawaoka, Daiki Miki, C. Nelson Hayes, Seiya Kashiyama, Sho Mokuda, Shinichi Yamazaki and Shiro Oka
Int. J. Mol. Sci. 2025, 26(20), 10141; https://doi.org/10.3390/ijms262010141 (registering DOI) - 18 Oct 2025
Abstract
Hepatitis B virus (HBV) particles containing HBV RNA are secreted into the blood; these RNA-containing particles are non-infectious byproducts of the replication cycle and are distinct from mature, DNA-containing virions. The proportion of these particles increases during nucleoside/nucleotide analog therapy, but the clinical
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Hepatitis B virus (HBV) particles containing HBV RNA are secreted into the blood; these RNA-containing particles are non-infectious byproducts of the replication cycle and are distinct from mature, DNA-containing virions. The proportion of these particles increases during nucleoside/nucleotide analog therapy, but the clinical significance of serum HBV RNA remains unclear. We evaluated longitudinal changes in serum HBV RNA and their association with the antiviral efficacy of nucleoside/nucleotide analog therapy. Eighty-six patients with chronic HBV infection (baseline HBV DNA ≥ 5.0 Log IU/mL and ALT < 500 U/L) treated with entecavir (ETV, N = 80) or tenofovir alafenamide (TAF, N = 6) were included. Serum HBV RNA was quantified using Cobas HBV RNA (RUO) at baseline, week 12, and week 48. Associations with clinical variables and treatment response were analyzed. Baseline HBV RNA correlated with HBsAg, HBV DNA, and hepatitis B core-related antigen. Both HBV DNA and RNA tended to decrease with advanced liver fibrosis. HBV DNA and RNA declines did not differ between HBeAg-positive and -negative patients, but the HBV RNA/DNA ratio at week 48 was significantly higher in HBeAg-positive cases (p < 0.001). Patients with baseline ALT ≥ 100 U/L showed significantly lower RNA levels at weeks 12 and 48 (p = 0.004, p < 0.001). While HBV DNA decline was similar between ETV and TAF (p = 0.076), RNA decline was significantly greater with TAF at week 12 (p = 0.027). Serum HBV RNA reflects intrahepatic viral replication and may not be influenced by fibrosis progression. HBV RNA decline during nucleoside/nucleotide analog therapy differed between ETV and TAF, suggesting drug-specific effects on viral RNA dynamics.
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(This article belongs to the Special Issue 25th Anniversary of IJMS: Updates and Advances in Molecular Pathology, Diagnostics, and Therapeutics)
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Open AccessReview
How Genes Meet Diet in LCHAD Deficiency: Nutrigenomics of Fatty Acid Oxidation Disorder
by
Zdzislaw Kochan and Joanna Karbowska
Int. J. Mol. Sci. 2025, 26(20), 10140; https://doi.org/10.3390/ijms262010140 (registering DOI) - 18 Oct 2025
Abstract
Mitochondrial long-chain fatty acid β-oxidation supplies energy to the heart, liver, and skeletal muscle. Impairment of this process due to a block at the step catalyzed by long-chain 3-hydroxyacyl-CoA dehydrogenase (LCHAD) leads to bioenergetic failure, manifesting as hypoglycemia, recurrent rhabdomyolysis, cardiomyopathy, and hepatic
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Mitochondrial long-chain fatty acid β-oxidation supplies energy to the heart, liver, and skeletal muscle. Impairment of this process due to a block at the step catalyzed by long-chain 3-hydroxyacyl-CoA dehydrogenase (LCHAD) leads to bioenergetic failure, manifesting as hypoglycemia, recurrent rhabdomyolysis, cardiomyopathy, and hepatic dysfunction. Accumulation of toxic intermediates—long-chain 3-hydroxyacyl-CoAs and the corresponding 3-hydroxyacylcarnitines—contributes to pigmentary retinopathy and peripheral neuropathy. Early diagnosis and careful dietary management can reduce life-threatening decompensation in childhood and improve survival into adulthood. This review examines the genetics of human LCHAD deficiency, describes its multisystem complications, and outlines nutritional strategies used to bypass the enzymatic block. We also explore nutrigenomic signals elicited by dietary treatment in LCHAD deficiency.
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(This article belongs to the Special Issue Lipid Metabolism in Human Health and Diseases)
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Open AccessReview
Hyaluronic Acid in Liver Fibrosis: Role in Inflammation, Tissue Remodeling, and Disease Progression
by
Carlos Rojano-Alfonso, Cristina López-Vicario, Berta Romero-Grimaldo, Bryan J. Contreras, Joan Clària and Esther Titos
Int. J. Mol. Sci. 2025, 26(20), 10139; https://doi.org/10.3390/ijms262010139 (registering DOI) - 18 Oct 2025
Abstract
Hyaluronic acid (HA) is a major glycosaminoglycan in the hepatic extracellular matrix and pericellular space, playing a critical role in maintaining liver architecture and regulating cell–matrix interactions. In chronic liver disease, regardless of etiology, dysregulated HA metabolism, particularly the generation and accumulation of
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Hyaluronic acid (HA) is a major glycosaminoglycan in the hepatic extracellular matrix and pericellular space, playing a critical role in maintaining liver architecture and regulating cell–matrix interactions. In chronic liver disease, regardless of etiology, dysregulated HA metabolism, particularly the generation and accumulation of low-molecular-weight HA (LMW-HA), has been implicated in fibrogenesis, immune dysregulation, and hepatocellular carcinogenesis via receptor-mediated pathways involving lymphocyte homing receptor (CD44), receptor for hyaluronan-mediated motility (RHAMM), and Toll-like receptors (TLRs). This review synthesizes current evidence on HA biosynthesis, turnover, and signaling, emphasizing its dual role as a structural scaffold and as an active modulator of immune responses and tumor progression in chronic liver disease. Given the rising global burden of metabolic liver disease, and in line with our recent findings that small HA fragments are elevated in obesity and promote low-grade, TLR-dependent activation of innate immune cells, we emphasize metabolic dysfunction-associated steatotic liver disease (MASLD) as a highly prevalent and clinically relevant setting to examine HA-driven immunomodulation during progression to advanced fibrosis and hepatocellular carcinoma (HCC) and to consider therapeutic strategies targeting HA synthesis, turnover, or receptor signaling.
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(This article belongs to the Special Issue Liver Fibrosis: Molecular Pathogenesis, Diagnosis and Treatment)
Open AccessArticle
Fungal Biotransformation of Chloroflavanones and Antimicrobial Activity of Parent Compounds and Derived Products
by
Agnieszka Krawczyk-Łebek, Tomasz Janeczko, Barbara Żarowska and Edyta Kostrzewa-Susłow
Int. J. Mol. Sci. 2025, 26(20), 10138; https://doi.org/10.3390/ijms262010138 (registering DOI) - 18 Oct 2025
Abstract
This study explores the synthesis of chlorine-substituted flavanones and their biotechnologically derived glycosides in order to evaluate how structural modifications influence both antimicrobial activity and pharmacokinetic properties, with attention to issues such as solubility and membrane transport. Four chloroflavanones (2′-, 3′-, 4′-, and
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This study explores the synthesis of chlorine-substituted flavanones and their biotechnologically derived glycosides in order to evaluate how structural modifications influence both antimicrobial activity and pharmacokinetic properties, with attention to issues such as solubility and membrane transport. Four chloroflavanones (2′-, 3′-, 4′-, and 6-chloroflavanone) were synthesized and biotransformed using entomopathogenic fungi to obtain glycosylated derivatives. Antimicrobial activity was assessed against five microbial strains, while pharmacokinetic properties were predicted computationally. Results showed that 4′-chloroflavanone demonstrated the strongest antimicrobial activity, particularly against Gram-positive bacteria Staphylococcus aureus ATCC 29213 and Enterococcus faecalis ATCC 19433. Most compounds unexpectedly promoted Escherichia coli ATCC 25922 growth, except 4′-chloroflavanone and 3′-chloroflavanone 6-O-β-D-(4″-O-methyl)-glucopyranoside. Nearly all compounds exhibited antifungal activity against Candida albicans ATCC 10231. Glycosylation generally reduced antimicrobial potency but improved water solubility and in silico predictions indicate markedly reduced blood–brain barrier permeation and potential P-glycoprotein recognition. Selective chlorine substitution combined with biotechnological glycosylation may offer a route to antimicrobial flavonoids with improved aqueous solubility and favorable predicted pharmacokinetics.
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(This article belongs to the Special Issue Focus on Plant Biotechnology and Molecular Breeding)
Open AccessArticle
Computational Analysis of Electron-Donating and Withdrawing Effects on Asymmetric Viologens for Enhanced Electrochromic Performance
by
Gulzat Nuroldayeva and Mannix P. Balanay
Int. J. Mol. Sci. 2025, 26(20), 10137; https://doi.org/10.3390/ijms262010137 (registering DOI) - 18 Oct 2025
Abstract
Viologens are promising candidates for next-generation electrochromic devices due to their reversible color changes, low operating voltages, and structural tunability. However, their practical performance is often constrained by limited color range, stability issues, and poor charge delocalization. In this study, we present a
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Viologens are promising candidates for next-generation electrochromic devices due to their reversible color changes, low operating voltages, and structural tunability. However, their practical performance is often constrained by limited color range, stability issues, and poor charge delocalization. In this study, we present a detailed density functional theory (DFT) and time-dependent DFT (TD-DFT) investigation of asymmetric viologens based on the Benzyl-4,4′-dipyridyl-R (BnV-R) framework. A series of electron-donating and electron-withdrawing substituents (CN, COOH, PO3H2, CH3, OH, NH2) were introduced via either benzyl or phenyl linkers. Geometry optimizations for neutral, radical cationic, and dicationic states were performed at the CAM-B3LYP/6-31+G(d,p) level with C-PCM solvent modeling. Electronic structure, frontier orbital distributions, and redox potentials were correlated with substituent type and linkage mode. Natural Bond Orbital analysis showed that electron-withdrawing groups stabilize reduced states, while electron-donating groups enhance intramolecular charge transfer and switching kinetics. TD-DFT calculations revealed significant bathochromic and hyperchromic shifts dependent on substitution patterns, with phenyl linkers promoting extended conjugation and benzyl spacers minimizing aggregation. Radical cation stability, quantified via ΔEred and comproportionation constants, highlighted cyano- and amine-substituted systems as particularly promising. These insights provide predictive design guidelines for tuning optical contrast, coloration efficiency, and electrochemical durability in advanced electrochromic applications.
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(This article belongs to the Section Physical Chemistry and Chemical Physics)
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