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39 Results Found

  • Article
  • Open Access
2 Citations
3,018 Views
23 Pages

In and out of Replication Stress: PCNA/RPA1-Based Dynamics of Fork Stalling and Restart in the Same Cell

  • Teodora Dyankova-Danovska,
  • Sonya Uzunova,
  • Georgi Danovski,
  • Rumen Stamatov,
  • Petar-Bogomil Kanev,
  • Aleksandar Atemin,
  • Aneliya Ivanova,
  • Radoslav Aleksandrov and
  • Stoyno Stoynov

Replication forks encounter various impediments, which induce fork stalling and threaten genome stability, yet the precise dynamics of fork stalling and restart at the single-cell level remain elusive. Herein, we devise a live-cell microscopy-based a...

  • Review
  • Open Access
16 Citations
11,107 Views
32 Pages

25 September 2018

The complete and accurate replication of the genome is a crucial aspect of cell proliferation that is often perturbed during oncogenesis. Replication stress arising from a variety of obstacles to replication fork progression and processivity is an im...

  • Review
  • Open Access
58 Citations
16,810 Views
33 Pages

27 December 2012

Homologous recombination is a universal mechanism that allows DNA repair and ensures the efficiency of DNA replication. The substrate initiating the process of homologous recombination is a single-stranded DNA that promotes a strand exchange reaction...

  • Review
  • Open Access
14 Citations
8,738 Views
11 Pages

Recovery from the DNA Replication Checkpoint

  • Indrajit Chaudhury and
  • Deanna M. Koepp

28 October 2016

Checkpoint recovery is integral to a successful checkpoint response. Checkpoint pathways monitor progress during cell division so that in the event of an error, the checkpoint is activated to block the cell cycle and activate repair pathways. Intrins...

  • Review
  • Open Access
15 Citations
5,661 Views
18 Pages

26 April 2020

In Escherichia coli, DNA replication forks stall on average once per cell cycle. When this occurs, replisome components disengage from the DNA, exposing an intact, or nearly intact fork. Consequently, the fork structure must be regressed away from th...

  • Review
  • Open Access
20 Citations
4,008 Views
16 Pages

9 June 2020

Components of the nuclear pore complex (NPC) have been shown to play a crucial role in protecting against replication stress, and recovery from some types of stalled or collapsed replication forks requires movement of the DNA to the NPC in order to m...

  • Review
  • Open Access
6 Citations
3,961 Views
21 Pages

6 September 2022

A variety of endogenous and exogenous insults are capable of impeding replication fork progression, leading to replication stress. Several SNF2 fork remodelers have been shown to play critical roles in resolving this replication stress, utilizing dif...

  • Article
  • Open Access
12 Citations
5,133 Views
13 Pages

Movement of the RecG Motor Domain upon DNA Binding Is Required for Efficient Fork Reversal

  • Garrett M. Warren,
  • Richard A. Stein,
  • Hassane S. Mchaourab and
  • Brandt F. Eichman

6 October 2018

RecG catalyzes reversal of stalled replication forks in response to replication stress in bacteria. The protein contains a fork recognition (“wedge”) domain that binds branched DNA and a superfamily II (SF2) ATPase motor that drives trans...

  • Article
  • Open Access
4 Citations
2,924 Views
25 Pages

It is widely accepted that DNA replication fork stalling is a common occurrence during cell proliferation, but there are robust mechanisms to alleviate this and ensure DNA replication is completed prior to chromosome segregation. The SMC5/6 complex h...

  • Article
  • Open Access
2 Citations
3,297 Views
19 Pages

4 August 2023

Topoisomerase inhibitor camptothecin (CPT) induces fork stalling and is highly toxic to proliferating cells. However, how cells respond to CPT-induced fork stalling has not been fully characterized. Here, we report that Cockayne syndrome group B (CSB...

  • Review
  • Open Access
83 Citations
11,775 Views
25 Pages

The Intra-S Checkpoint Responses to DNA Damage

  • Divya Ramalingam Iyer and
  • Nicholas Rhind

17 February 2017

Faithful duplication of the genome is a challenge because DNA is susceptible to damage by a number of intrinsic and extrinsic genotoxins, such as free radicals and UV light. Cells activate the intra-S checkpoint in response to damage during S phase t...

  • Review
  • Open Access
7 Citations
6,521 Views
18 Pages

Nucleases and Co-Factors in DNA Replication Stress Responses

  • Jac A. Nickoloff,
  • Neelam Sharma,
  • Lynn Taylor,
  • Sage J. Allen and
  • Robert Hromas

1 March 2022

DNA replication stress is a constant threat that cells must manage to proliferate and maintain genome integrity. DNA replication stress responses, a subset of the broader DNA damage response (DDR), operate when the DNA replication machinery (replisom...

  • Review
  • Open Access
58 Citations
10,981 Views
15 Pages

Human Exonuclease 1 (EXO1) Regulatory Functions in DNA Replication with Putative Roles in Cancer

  • Guido Keijzers,
  • Daniela Bakula,
  • Michael Angelo Petr,
  • Nils Gedsig Kirkelund Madsen,
  • Amanuel Teklu,
  • Garik Mkrtchyan,
  • Brenna Osborne and
  • Morten Scheibye-Knudsen

Human exonuclease 1 (EXO1), a 5′→3′ exonuclease, contributes to the regulation of the cell cycle checkpoints, replication fork maintenance, and post replicative DNA repair pathways. These processes are required for the resolution of...

  • Review
  • Open Access
11 Citations
3,975 Views
14 Pages

17 December 2021

DNA lesions have properties that allow them to escape their nuclear compartment to achieve DNA repair in another one. Recent studies uncovered that the replication fork, when its progression is impaired, exhibits increased mobility when changing nucl...

  • Review
  • Open Access
23 Citations
7,415 Views
21 Pages

Cellular Responses to Widespread DNA Replication Stress

  • Jac A. Nickoloff,
  • Aruna S. Jaiswal,
  • Neelam Sharma,
  • Elizabeth A. Williamson,
  • Manh T. Tran,
  • Dominic Arris,
  • Ming Yang and
  • Robert Hromas

29 November 2023

Replicative DNA polymerases are blocked by nearly all types of DNA damage. The resulting DNA replication stress threatens genome stability. DNA replication stress is also caused by depletion of nucleotide pools, DNA polymerase inhibitors, and DNA seq...

  • Review
  • Open Access
52 Citations
10,681 Views
24 Pages

DNA Replication Origins and Fork Progression at Mammalian Telomeres

  • Mitsunori Higa,
  • Masatoshi Fujita and
  • Kazumasa Yoshida

28 March 2017

Telomeres are essential chromosomal regions that prevent critical shortening of linear chromosomes and genomic instability in eukaryotic cells. The bulk of telomeric DNA is replicated by semi-conservative DNA replication in the same way as the rest o...

  • Review
  • Open Access
15 Citations
7,987 Views
17 Pages

Chromatin as a Platform for Modulating the Replication Stress Response

  • Louis-Alexandre Fournier,
  • Arun Kumar and
  • Peter C. Stirling

11 December 2018

Eukaryotic DNA replication occurs in the context of chromatin. Recent years have seen major advances in our understanding of histone supply, histone recycling and nascent histone incorporation during replication. Furthermore, much is now known about...

  • Article
  • Open Access
9 Citations
4,792 Views
15 Pages

The H. pylori CagA Oncoprotein Induces DNA Double Strand Breaks through Fanconi Anemia Pathway Downregulation and Replication Fork Collapse

  • Arun Mouli Kolinjivadi,
  • Haresh Sankar,
  • Ramveer Choudhary,
  • Lavina Sierra Tay,
  • Tuan Zea Tan,
  • Naoko Murata-Kamiya,
  • Dominic Chih-Cheng Voon,
  • Dennis Kappei,
  • Masanori Hatakeyama and
  • Yoshiaki Ito
  • + 1 author

31 January 2022

The proteins from the Fanconi Anemia (FA) pathway of DNA repair maintain DNA replication fork integrity by preventing the unscheduled degradation of nascent DNA at regions of stalled replication forks. Here, we ask if the bacterial pathogen H. pylori...

  • Review
  • Open Access
16 Citations
6,181 Views
19 Pages

25 July 2022

Proliferating cells regularly experience replication stress caused by spontaneous DNA damage that results from endogenous reactive oxygen species (ROS), DNA sequences that can assume secondary and tertiary structures, and collisions between opposing...

  • Review
  • Open Access
6 Citations
4,934 Views
21 Pages

29 April 2023

In their influential reviews, Hanahan and Weinberg coined the term ‘Hallmarks of Cancer’ and described genome instability as a property of cells enabling cancer development. Accurate DNA replication of genomes is central to diminishing ge...

  • Article
  • Open Access
9 Citations
5,141 Views
22 Pages

PFKFB3 Inhibition Sensitizes DNA Crosslinking Chemotherapies by Suppressing Fanconi Anemia Repair

  • Anna Huguet Ninou,
  • Jemina Lehto,
  • Dimitrios Chioureas,
  • Hannah Stigsdotter,
  • Korbinian Schelzig,
  • Emma Åkerlund,
  • Greta Gudoityte,
  • Ulrika Joneborg,
  • Joseph Carlson and
  • Nina Marie Susanne Gustafsson
  • + 2 authors

18 July 2021

Replicative repair of interstrand crosslinks (ICL) generated by platinum chemotherapeutics is orchestrated by the Fanconi anemia (FA) repair pathway to ensure resolution of stalled replication forks and the maintenance of genomic integrity. Here, we...

  • Review
  • Open Access
41 Citations
9,390 Views
36 Pages

Small ubiquitin-like modifier (SUMO)-targeted E3 ubiquitin ligases (STUbLs) are specialized enzymes that recognize SUMOylated proteins and attach ubiquitin to them. They therefore connect the cellular SUMOylation and ubiquitination circuits. STUbLs p...

  • Review
  • Open Access
8 Citations
8,738 Views
12 Pages

19 August 2016

Recombinase enzymes catalyse invasion of single-stranded DNA (ssDNA) into homologous duplex DNA forming “Displacement loops” (D-loops), a process called synapsis. This triggers homologous recombination (HR), which can follow several possible paths to...

  • Review
  • Open Access
12 Citations
7,641 Views
29 Pages

Post-Translational Modifications of PCNA: Guiding for the Best DNA Damage Tolerance Choice

  • Gemma Bellí,
  • Neus Colomina,
  • Laia Castells-Roca and
  • Neus P. Lorite

10 June 2022

The sliding clamp PCNA is a multifunctional homotrimer mainly linked to DNA replication. During this process, cells must ensure an accurate and complete genome replication when constantly challenged by the presence of DNA lesions. Post-translational...

  • Article
  • Open Access
7 Citations
2,677 Views
22 Pages

DisA Restrains the Processing and Cleavage of Reversed Replication Forks by the RuvAB-RecU Resolvasome

  • Carolina Gándara,
  • Rubén Torres,
  • Begoña Carrasco,
  • Silvia Ayora and
  • Juan C. Alonso

20 October 2021

DNA lesions that impede fork progression cause replisome stalling and threaten genome stability. Bacillus subtilis RecA, at a lesion-containing gap, interacts with and facilitates DisA pausing at these branched intermediates. Paused DisA suppresses i...

  • Review
  • Open Access
11 Citations
7,733 Views
46 Pages

A Link between Replicative Stress, Lamin Proteins, and Inflammation

  • Simon Willaume,
  • Emilie Rass,
  • Paula Fontanilla-Ramirez,
  • Angela Moussa,
  • Paul Wanschoor and
  • Pascale Bertrand

9 April 2021

Double-stranded breaks (DSB), the most toxic DNA lesions, are either a consequence of cellular metabolism, programmed as in during V(D)J recombination, or induced by anti-tumoral therapies or accidental genotoxic exposure. One origin of DSB sources i...

  • Article
  • Open Access
1 Citations
3,474 Views
22 Pages

The Promotion of Genomic Instability in Human Fibroblasts by Adenovirus 12 Early Region 1B 55K Protein in the Absence of Viral Infection

  • Tareq Abualfaraj,
  • Nafiseh Chalabi Hagkarim,
  • Robert Hollingworth,
  • Laura Grange,
  • Satpal Jhujh,
  • Grant S. Stewart and
  • Roger J. Grand

6 December 2021

The adenovirus 12 early region 1B55K (Ad12E1B55K) protein has long been known to cause non-random damage to chromosomes 1 and 17 in human cells. These sites, referred to as Ad12 modification sites, have marked similarities to classic fragile sites. I...

  • Review
  • Open Access
28 Citations
6,889 Views
22 Pages

19 March 2019

Complete genome duplication in every cell cycle is fundamental for genome stability and cell survival. However, chromosome replication is frequently challenged by obstacles that impede DNA replication fork (RF) progression, which subsequently causes...

  • Article
  • Open Access
920 Views
11 Pages

Accurate DNA Synthesis Across 8-Oxoadenine by Human PrimPol

  • Elizaveta O. Boldinova,
  • Alexander A. Kruchinin,
  • Polina N. Kamzeeva,
  • Andrey V. Aralov and
  • Alena V. Makarova

PrimPol is a human DNA primase and DNA polymerase involved in DNA damage tolerance in both nuclei and mitochondria. PrimPol restarts stalled replication forks by synthesizing DNA primers de novo and also possesses DNA translesion activity (TLS activi...

  • Review
  • Open Access
87 Citations
17,701 Views
32 Pages

Replication Stress in Mammalian Cells and Its Consequences for Mitosis

  • Camille Gelot,
  • Indiana Magdalou and
  • Bernard S. Lopez

22 May 2015

The faithful transmission of genetic information to daughter cells is central to maintaining genomic stability and relies on the accurate and complete duplication of genetic material during each cell cycle. However, the genome is routinely exposed to...

  • Article
  • Open Access
8 Citations
5,034 Views
17 Pages

Role of RadA and DNA Polymerases in Recombination-Associated DNA Synthesis in Hyperthermophilic Archaea

  • Gaëlle Hogrel,
  • Yang Lu,
  • Nicolas Alexandre,
  • Audrey Bossé,
  • Rémi Dulermo,
  • Sonoko Ishino,
  • Yoshizumi Ishino and
  • Didier Flament

14 July 2020

Among the three domains of life, the process of homologous recombination (HR) plays a central role in the repair of double-strand DNA breaks and the restart of stalled replication forks. Curiously, main protein actors involved in the HR process appea...

  • Article
  • Open Access
2 Citations
3,853 Views
15 Pages

Role of Homologous Recombination Genes in Repair of Alkylation Base Damage by Candida albicans

  • Toni Ciudad,
  • Alberto Bellido,
  • Encarnación Andaluz,
  • Belén Hermosa and
  • Germán Larriba

7 September 2018

Candida albicans mutants deficient in homologous recombination (HR) are extremely sensitive to the alkylating agent methyl-methane-sulfonate (MMS). Here, we have investigated the role of HR genes in the protection and repair of C. albicans chromosome...

  • Review
  • Open Access
17 Citations
12,070 Views
27 Pages

21 April 2015

Degradation of helicases or helicase-like proteins, often mediated by ubiquitin-proteasomal pathways, plays important regulatory roles in cellular mechanisms that respond to DNA damage or replication stress. The Bloom’s syndrome helicase (BLM) provid...

  • Article
  • Open Access
12 Citations
3,163 Views
23 Pages

Characterization of the Chimeric PriB-SSBc Protein

  • En-Shyh Lin,
  • Yen-Hua Huang and
  • Cheng-Yang Huang

7 October 2021

PriB is a primosomal protein required for the replication fork restart in bacteria. Although PriB shares structural similarity with SSB, they bind ssDNA differently. SSB consists of an N-terminal ssDNA-binding/oligomerization domain (SSBn) and a flex...

  • Article
  • Open Access
20 Citations
3,117 Views
13 Pages

Single-stranded DNA (ssDNA)-binding protein (SSB) plays a crucial role in DNA replication, repair, and recombination as well as replication fork restarts. SSB is essential for cell survival and, thus, is an attractive target for potential antipathoge...

  • Article
  • Open Access
13 Citations
3,339 Views
17 Pages

Crystal Structure of an SSB Protein from Salmonella enterica and Its Inhibition by Flavanonol Taxifolin

  • En-Shyh Lin,
  • Yen-Hua Huang,
  • Ren-Hong Luo,
  • Zarrin Basharat and
  • Cheng-Yang Huang

Single-stranded DNA (ssDNA)-binding proteins (SSBs) play a central role in cells by participating in DNA metabolism, including replication, repair, recombination, and replication fork restart. SSBs are essential for cell survival and thus an attracti...

  • Review
  • Open Access
30 Citations
11,321 Views
20 Pages

The human DNA2 (DNA replication helicase/nuclease 2) protein is expressed in both the nucleus and mitochondria, where it displays ATPase-dependent nuclease and helicase activities. DNA2 plays an important role in the removing of long flaps in DNA rep...