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13 Results Found

  • Article
  • Open Access
18 Citations
4,166 Views
22 Pages

Proteomics Profiling of Stool Samples from Preterm Neonates with SWATH/DIA Mass Spectrometry for Predicting Necrotizing Enterocolitis

  • David Gagné,
  • Elmira Shajari,
  • Marie-Pier Thibault,
  • Jean-François Noël and ,
  • François-Michel Boisvert,
  • Corentin Babakissa,
  • Emile Levy,
  • Hugo Gagnon,
  • Marie A. Brunet and
  • Jean-François Beaulieu
  • + 8 authors+ 3 authors

1 October 2022

Necrotizing enterocolitis (NEC) is a life-threatening condition for premature infants in neonatal intensive care units. Finding indicators that can predict NEC development before symptoms appear would provide more time to apply targeted interventions...

(This article belongs to the Special Issue Proteomics and Its Applications in Disease)
  • Article
  • Open Access
3 Citations
5,025 Views
24 Pages

DIA/SWATH-Mass Spectrometry Revealing Melanoma Cell Proteome Transformations with Silver Nanoparticles: An Innovative Comparative Study

  • Simona Martano,
  • Jakub Faktor,
  • Sachin Kote,
  • Mariafrancesca Cascione and ,
  • Riccardo Di Corato,
  • Dagmar Faktorova,
  • Paola Semeraro,
  • Loris Rizzello,
  • Stefano Leporatti and
  • Valeria De Matteis
  • + 6 authors+ 1 author

26 February 2025

Melanoma is an aggressive cancer with rising incidence and high mortality rates, largely due to chemotherapy resistance and molecular dysregulation. Nanotechnology, particularly silver nanoparticles (AgNPs), has emerged as a promising therapeutic ave...

(This article belongs to the Section Molecular Nanoscience)
  • Article
  • Open Access
19 Citations
5,713 Views
17 Pages

Age-Dependent Hippocampal Proteomics in the APP/PS1 Alzheimer Mouse Model: A Comparative Analysis with Classical SWATH/DIA and directDIA Approaches

  • Sophie J. F. van der Spek,
  • Miguel A. Gonzalez-Lozano,
  • Frank Koopmans,
  • Suzanne S. M. Miedema and ,
  • Iryna Paliukhovich,
  • August B. Smit and
  • Ka Wan Li
  • + 2 authors+ 0 author

24 June 2021

Alzheimer’s disease (AD) is the most common neurodegenerative disorder in the human population, for which there is currently no cure. The cause of AD is unknown; however, the toxic effects of amyloid-β (Aβ) are believed to play a role in its onset. T...

(This article belongs to the Collection Advances in Neurodegenerative Disease)
  • Article
  • Open Access
5 Citations
8,095 Views
21 Pages

Identification of Plasma Biomarkers from Rheumatoid Arthritis Patients Using an Optimized Sequential Window Acquisition of All THeoretical Mass Spectra (SWATH) Proteomics Workflow

  • Liang Jin,
  • Fei Wang,
  • Xue Wang,
  • Bohdan P. Harvey and ,
  • Yingtao Bi,
  • Chenqi Hu,
  • Baoliang Cui,
  • Anhdao T. Darcy,
  • John W. Maull and
  • Yu Tian
  • + 9 authors+ 4 authors

16 October 2023

Rheumatoid arthritis (RA) is a systemic autoimmune and inflammatory disease. Plasma biomarkers are critical for understanding disease mechanisms, treatment effects, and diagnosis. Mass spectrometry-based proteomics is a powerful tool for unbiased bio...

(This article belongs to the Section Proteomics Technology and Methodology Development)
  • Article
  • Open Access
9 Citations
4,831 Views
53 Pages

Natural Antioxidant By-Product Mixture Counteracts the Effects of Aflatoxin B1 and Ochratoxin A Exposure of Piglets after Weaning: A Proteomic Survey on Liver Microsomal Fraction

  • Roua Gabriela Popescu,
  • George Cătălin Marinescu,
  • Andreea Luminița Rădulescu,
  • Daniela Eliza Marin and ,
  • Ionelia Țăranu and
  • Anca Dinischiotu
  • + 1 author+ 0 author

19 April 2023

Mycotoxins are toxic compounds produced by certain strains of fungi that can contaminate raw feed materials. Once ingested, even in small doses, they cause multiple health issues for animals and, downstream, for people consuming meat. It was proposed...

(This article belongs to the Special Issue Mycotoxins in Feed, Food, Nutraceuticals, and Functional Food)
  • Article
  • Open Access
95 Citations
11,874 Views
14 Pages

Optimization of Data-Independent Acquisition Mass Spectrometry for Deep and Highly Sensitive Proteomic Analysis

  • Yusuke Kawashima,
  • Eiichiro Watanabe,
  • Taichi Umeyama,
  • Daisuke Nakajima and ,
  • Masahira Hattori,
  • Kenya Honda and
  • Osamu Ohara
  • + 2 authors+ 0 author

26 November 2019

Data-independent acquisition (DIA)-mass spectrometry (MS)-based proteomic analysis overtop the existing data-dependent acquisition (DDA)-MS-based proteomic analysis to enable deep proteome coverage and precise relative quantitative analysis in single...

(This article belongs to the Special Issue Advances in Proteomic Research)
  • Article
  • Open Access
13 Citations
8,882 Views
37 Pages

Nicotinamide Mononucleotide (NMN) Works in Type 2 Diabetes through Unexpected Effects in Adipose Tissue, Not by Mitochondrial Biogenesis

  • Roua Gabriela Popescu,
  • Anca Dinischiotu,
  • Teodoru Soare,
  • Ene Vlase and
  • George Cătălin Marinescu

23 February 2024

Nicotinamide mononucleotide (NMN) has emerged as a promising therapeutic intervention for age-related disorders, including type 2 diabetes. In this study, we confirmed the previously observed effects of NMN treatment on glucose uptake and investigate...

(This article belongs to the Special Issue Proteomics and Its Applications in Disease: 2nd Edition)
  • Technical Note
  • Open Access
8 Citations
5,312 Views
13 Pages

Urine-HILIC: Automated Sample Preparation for Bottom-Up Urinary Proteome Profiling in Clinical Proteomics

  • Ireshyn Selvan Govender,
  • Rethabile Mokoena,
  • Stoyan Stoychev and
  • Previn Naicker

28 September 2023

Urine provides a diverse source of information related to a patient’s health status and is ideal for clinical proteomics due to its ease of collection. To date, most methods for the preparation of urine samples lack the throughput required to a...

(This article belongs to the Special Issue Proteomics of Body Fluids: Principles, Methods, and Applications)
  • Article
  • Open Access
10 Citations
4,607 Views
20 Pages

Application of SWATH Mass Spectrometry and Machine Learning in the Diagnosis of Inflammatory Bowel Disease Based on the Stool Proteome

  • Elmira Shajari,
  • David Gagné,
  • Mandy Malick,
  • Patricia Roy and ,
  • Jean-François Noël,
  • Hugo Gagnon,
  • Marie A. Brunet,
  • Maxime Delisle,
  • François-Michel Boisvert and
  • Jean-François Beaulieu
  • + 5 authors+ 0 author

Inflammatory bowel disease (IBD) flare-ups exhibit symptoms that are similar to other diseases and conditions, making diagnosis and treatment complicated. Currently, the gold standard for diagnosing and monitoring IBD is colonoscopy and biopsy, which...

(This article belongs to the Special Issue Omics Approaches on Immune-Mediated Inflammatory Diseases: Towards Novel Biomarkers and Potential Therapeutic Targets Vol. 2)
  • Article
  • Open Access
4 Citations
2,806 Views
15 Pages

Data Independent Acquisition Reveals In-Depth Serum Proteome Changes in Canine Leishmaniosis

  • Franjo Martinković,
  • Marin Popović,
  • Ozren Smolec,
  • Vladimir Mrljak and ,
  • Peter David Eckersall and
  • Anita Horvatić
  • + 1 author+ 0 author

28 February 2023

Comprehensive profiling of serum proteome provides valuable clues of health status and pathophysiological processes, making it the main strategy in biomarker discovery. However, the high dynamic range significantly decreases the number of detectable...

(This article belongs to the Special Issue Advances in Functional Proteomics and Metabolomics)
  • Feature Paper
  • Article
  • Open Access
1,268 Views
24 Pages

2 March 2026

Establishing plasma biomarkers in the veterinary field has always been a challenge, due to a lack of significant understanding of pathophysiological attributes of disease. Advances in mass spectrometry-based proteomic techniques have improved plasma...

(This article belongs to the Section Companion Animals)
  • Article
  • Open Access
6 Citations
4,074 Views
24 Pages

Signature Proteins in Small Extracellular Vesicles of Granulocytes and CD4+ T-Cell Subpopulations Identified by Comparative Proteomic Analysis

  • Sara Vázquez-Mera,
  • Pablo Miguéns-Suárez,
  • Laura Martelo-Vidal,
  • Sara Rivas-López and ,
  • Lena Uller,
  • Susana B. Bravo,
  • Vicente Domínguez-Arca,
  • Xavier Muñoz,
  • Francisco J. González-Barcala and
  • Francisco J. Salgado
  • + 6 authors+ 1 author

9 October 2024

Several studies have described the proteomic profile of different immune cell types, but only a few have also analysed the content of their delivered small extracellular vesicles (sEVs). The aim of the present study was to compare the protein signatu...

(This article belongs to the Special Issue Role of Extracellular Vesicles in Immunology)
  • Article
  • Open Access
7 Citations
4,669 Views
14 Pages

Protein Profiling of WERI-RB1 and Etoposide-Resistant WERI-ETOR Reveals New Insights into Topoisomerase Inhibitor Resistance in Retinoblastoma

  • Vinodh Kakkassery,
  • Timo Gemoll,
  • Miriam M. Kraemer,
  • Thorben Sauer and ,
  • Aysegül Tura,
  • Mahdy Ranjbar,
  • Salvatore Grisanti,
  • Stephanie C. Joachim,
  • Stefan Mergler and
  • Jacqueline Reinhard
  • + 5 authors+ 0 author

Chemotherapy resistance is one of the reasons for eye loss in patients with retinoblastoma (RB). RB chemotherapy resistance has been studied in different cell culture models, such as WERI-RB1. In addition, chemotherapy-resistant RB subclones, such as...

(This article belongs to the Section Molecular Oncology)