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12 Results Found

  • Technical Note
  • Open Access
36 Citations
4,266 Views
16 Pages

Quantitative trait loci (QTL) are genomic regions associated with phenotype variation of quantitative traits. To date, a total of 313 QTL for 31 quantitative traits have been reported in 14 studies on flax. Of these, 200 QTL from 12 studies were iden...

  • Article
  • Open Access
38 Citations
8,580 Views
15 Pages

An Improved Oil Palm Genome Assembly as a Valuable Resource for Crop Improvement and Comparative Genomics in the Arecoideae Subfamily

  • Ai-Ling Ong,
  • Chee-Keng Teh,
  • Sean Mayes,
  • Festo Massawe and ,
  • David Ross Appleton and
  • Harikrishna Kulaveerasingam
  • + 1 author+ 0 author

3 November 2020

Oil palm (Elaeis guineensis Jacq.) is the most traded crop among the economically important palm species. Here, we report an extended version genome of E. guineensis that is 1.2 Gb in length, an improvement of the physical genome coverage to 79% from...

(This article belongs to the Special Issue Plant Molecular Breeding and Biotechnology)
  • Article
  • Open Access
9 Citations
5,329 Views
25 Pages

Impact of Chromosomal Rearrangements on the Interpretation of Lupin Karyotype Evolution

  • Karolina Susek,
  • Wojciech Bielski,
  • Katarzyna B. Czyż,
  • Robert Hasterok and ,
  • Scott A. Jackson,
  • Bogdan Wolko and
  • Barbara Naganowska
  • + 2 authors+ 0 author

1 April 2019

Plant genome evolution can be very complex and challenging to describe, even within a genus. Mechanisms that underlie genome variation are complex and can include whole-genome duplications, gene duplication and/or loss, and, importantly, multiple chr...

(This article belongs to the Special Issue Genomics of Plant Domestication and Crop Evolution)
  • Article
  • Open Access
22 Citations
6,561 Views
12 Pages

The Dark Matter of Large Cereal Genomes: Long Tandem Repeats

  • Veronika Kapustová,
  • Zuzana Tulpová,
  • Helena Toegelová,
  • Petr Novák and ,
  • Jiří Macas,
  • Miroslava Karafiátová,
  • Eva Hřibová,
  • Jaroslav Doležel and
  • Hana Šimková
  • + 4 authors+ 0 author

Reference genomes of important cereals, including barley, emmer wheat and bread wheat, were released recently. Their comparison with genome size estimates obtained by flow cytometry indicated that the assemblies represent not more than 88–98% o...

(This article belongs to the Special Issue Molecular Advances in Wheat and Barley)
  • Article
  • Open Access
370 Views
16 Pages

Chromosome-Scale Genome of Zoonotic Eyeworm Thelazia callipaeda from China

  • Zichen Liu,
  • Yang Bai,
  • Zhenyuan Shu,
  • Hongfei Hu and
  • Yipeng Jin

23 August 2026

Thelazia callipaeda is a vector-borne zoonotic eyeworm infecting companion animals, wildlife, and humans, but chromosome-scale genomic resources from Chinese clinical material remain limited. We generated a genome supported by Pacific Biosciences (Pa...

(This article belongs to the Special Issue The Role of Genomics and Transcriptomics in Understanding Zoonotic Diseases)
  • Article
  • Open Access
933 Views
8 Pages

14 October 2025

Background: Telomeres are nucleoprotein complexes that maintain chromosome integrity in eukaryotes. In insects, the canonical telomeric repeat (TTAGG)n is considered ancestral, though alternative motifs exist across various orders. Neuroptera, compri...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
7 Citations
5,190 Views
13 Pages

A Chromosome-Scale Genome Assembly of Mitragyna speciosa (Kratom) and the Assessment of Its Genetic Diversity in Thailand

  • Wirulda Pootakham,
  • Thippawan Yoocha,
  • Nukoon Jomchai,
  • Wasitthee Kongkachana and ,
  • Chaiwat Naktang,
  • Chutima Sonthirod,
  • Srimek Chowpongpang,
  • Panyavut Aumpuchin and
  • Sithichoke Tangphatsornruang
  • + 4 authors+ 0 author

12 October 2022

Mitragyna speciosa (Kratom) is a tropical narcotic plant native to Southeast Asia with unique pharmacological properties. Here, we report the first chromosome-scale assembly of the M. speciosa genome. We employed PacBio sequencing to obtain a prelimi...

(This article belongs to the Section Genetics and Genomics)
  • Article
  • Open Access
50 Citations
6,733 Views
24 Pages

Genome-Wide Association Study and Selection Signatures Detect Genomic Regions Associated with Seed Yield and Oil Quality in Flax

  • Frank M. You,
  • Jin Xiao,
  • Pingchuan Li,
  • Zhen Yao and ,
  • Gaofeng Jia,
  • Liqiang He,
  • Santosh Kumar,
  • Braulio Soto-Cerda,
  • Scott D. Duguid and
  • Sylvie Cloutier
  • + 7 authors+ 2 authors

A genome-wide association study (GWAS) was performed on a set of 260 lines which belong to three different bi-parental flax mapping populations. These lines were sequenced to an averaged genome coverage of 19× using the Illumina Hi-Seq platform...

(This article belongs to the Special Issue Plant Genomics)
  • Article
  • Open Access
5 Citations
2,337 Views
15 Pages

Molecular Characterization and Phylogenetic Analysis of Centipedegrass [Eremochloa ophiuroides (Munro) Hack.] Based on the Complete Chloroplast Genome Sequence

  • Haoran Wang,
  • Yuan Zhang,
  • Ling Zhang,
  • Jingjing Wang and ,
  • Hailin Guo,
  • Junqin Zong,
  • Jingbo Chen,
  • Dandan Li,
  • Ling Li and
  • Jianjian Li
  • + 6 authors+ 1 author

19 February 2024

Centipedegrass (Eremochloa ophiuroides) is an important warm-season grass plant used as a turfgrass as well as pasture grass in tropical and subtropical regions, with wide application in land surface greening and soil conservation in South China and...

(This article belongs to the Section Molecular Plant Sciences)
  • Article
  • Open Access
5 Citations
4,281 Views
16 Pages

While most of the species in Goodeniaceae family, excluding the Scaevola genus, are endemic to Australasia, S. taccada and S. hainanensis have expanded their distribution range to the tropical coastlines of the Atlantic and Indian Oceans. S. taccada...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
13 Citations
3,934 Views
14 Pages

29 December 2022

Chinese cabbage has unintended bolting in early spring due to sudden climate change. In this study, late-bolting Chinese cabbage lines were developed via mutagenesis of the BrLEAFY (BrLFY) gene, a transcription factor that determines floral identity,...

(This article belongs to the Section Molecular Plant Sciences)
  • Article
  • Open Access
6 Citations
5,362 Views
20 Pages

Prioritizing Endangered Species in Genome Sequencing: Conservation Genomics in Action with the First Platinum-Standard Reference-Quality Genome of the Critically Endangered European Mink Mustela lutreola L., 1761

  • Jakub Skorupski,
  • Florian Brandes,
  • Christian Seebass,
  • Wolfgang Festl and ,
  • Przemysław Śmietana,
  • Jennifer Balacco,
  • Nivesh Jain,
  • Tatiana Tilley,
  • Linelle Abueg and
  • Erich D. Jarvis
  • + 9 authors+ 4 authors

1 October 2023

The European mink Mustela lutreola (Mustelidae) ranks among the most endangered mammalian species globally, experiencing a rapid and severe decline in population size, density, and distribution. Given the critical need for effective conservation stra...

(This article belongs to the Special Issue State-of-the-Art Molecular Genetics and Genomics in Poland 2.0)