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20 Results Found

  • Article
  • Open Access
7 Citations
3,295 Views
17 Pages

12 October 2022

RNA polymerase elongation along the gene body is tightly regulated to ensure proper transcription and alternative splicing events. Understanding the mechanism and factors critical in regulating the rate of RNA polymerase II elongation and processivit...

  • Review
  • Open Access
22 Citations
6,507 Views
22 Pages

The MYC oncoprotein and its family members N-MYC and L-MYC are known to drive a wide variety of human cancers. Emerging evidence suggests that MYC has a bi-directional relationship with the molecular clock in cancer. The molecular clock is responsibl...

  • Review
  • Open Access
51 Citations
9,768 Views
16 Pages

17 February 2020

Protein arginine deimination leading to the non-coded amino acid citrulline remains a key question in the field of post-translational modifications ever since its discovery by Rogers and Simmonds in 1958. Citrullination is catalyzed by a family of en...

  • Article
  • Open Access
6 Citations
2,280 Views
36 Pages

23 November 2024

Drug abuse continues to pose a significant challenge in HIV control efforts. In our investigation, we discovered that cocaine not only upregulates the expression of the DNA-dependent protein kinase (DNA-PK) but also augments DNA-PK activation by enha...

  • Article
  • Open Access
5 Citations
3,094 Views
19 Pages

Ribosome Pausing Negatively Regulates Protein Translation in Maize Seedlings during Dark-to-Light Transitions

  • Mingming Hou,
  • Wei Fan,
  • Deyi Zhong,
  • Xing Dai,
  • Quan Wang,
  • Wanfei Liu and
  • Shengben Li

Regulation of translation is a crucial step in gene expression. Developmental signals and environmental stimuli dynamically regulate translation via upstream small open reading frames (uORFs) and ribosome pausing. Recent studies have revealed many pl...

  • Review
  • Open Access
1 Citations
2,561 Views
14 Pages

9 August 2023

Cell autonomous circadian oscillation is present in central and various peripheral tissues. The intrinsic tissue clock and various extrinsic cues drive gene expression rhythms. Transcription regulation is thought to be the main driving force for gene...

  • Review
  • Open Access
16 Citations
4,320 Views
19 Pages

Striatal Cholinergic Signaling in Time and Space

  • Dvyne Nosaka and
  • Jeffery R. Wickens

10 February 2022

The cholinergic interneurons of the striatum account for a small fraction of all striatal cell types but due to their extensive axonal arborization give the striatum the highest content of acetylcholine of almost any nucleus in the brain. The prevail...

  • Review
  • Open Access
39 Citations
9,102 Views
41 Pages

HIV-1 Proviral Transcription and Latency in the New Era

  • Ashutosh Shukla,
  • Nora-Guadalupe P. Ramirez and
  • Iván D’Orso

18 May 2020

Three decades of extensive work in the HIV field have revealed key viral and host cell factors controlling proviral transcription. Various models of transcriptional regulation have emerged based on the collective information from in vitro assays and...

  • Article
  • Open Access
16 Citations
3,927 Views
19 Pages

PIP2-Effector Protein MPRIP Regulates RNA Polymerase II Condensation and Transcription

  • Can Balaban,
  • Martin Sztacho,
  • Ludovica Antiga,
  • Ana Miladinović,
  • Masahiko Harata and
  • Pavel Hozák

24 February 2023

The specific post-translational modifications of the C-terminal domain (CTD) of the Rpb1 subunit of RNA polymerase II (RNAPII) correlate with different stages of transcription. The phosphorylation of the Ser5 residues of this domain associates with t...

  • Article
  • Open Access
3,207 Views
22 Pages

Buffer pH-Driven Electrokinetic Concentration of Proteins in a Straight Microfluidic Channel

  • Diganta Dutta,
  • Xavier Palmer,
  • Debajit Chakraborty and
  • Lanju Mei

We present a buffer-pH-modulated electrokinetic concentration strategy in MEMS microchannels that harnesses simple pH shifts to neutralize and charge proteins, reversibly “pausing” them at a planar electric-gate electrode by tuning to the...

  • Article
  • Open Access
50 Citations
7,351 Views
13 Pages

Pan-Cancer Mutational and Transcriptional Analysis of the Integrator Complex

  • Antonio Federico,
  • Monica Rienzo,
  • Ciro Abbondanza,
  • Valerio Costa,
  • Alfredo Ciccodicola and
  • Amelia Casamassimi

The integrator complex has been recently identified as a key regulator of RNA Polymerase II-mediated transcription, with many functions including the processing of small nuclear RNAs, the pause-release and elongation of polymerase during the transcri...

  • Review
  • Open Access
11 Citations
4,519 Views
20 Pages

Myc is one of the most well-known oncogenes driving tumorigenesis in a wide variety of tissues. From the brain to blood, its deregulation derails physiological pathways that grant the correct functioning of the cell. Its action is carried out at the...

  • Review
  • Open Access
7 Citations
7,959 Views
28 Pages

DNA Manipulation and Single-Molecule Imaging

  • Shunsuke Takahashi,
  • Masahiko Oshige and
  • Shinji Katsura

17 February 2021

DNA replication, repair, and recombination in the cell play a significant role in the regulation of the inheritance, maintenance, and transfer of genetic information. To elucidate the biomolecular mechanism in the cell, some molecular models of DNA r...

  • Article
  • Open Access
16 Citations
3,791 Views
25 Pages

Human Cytomegalovirus Infection Elicits Global Changes in Host Transcription by RNA Polymerases I, II, and III

  • Christopher B. Ball,
  • Mrutyunjaya Parida,
  • Ming Li,
  • Benjamin M. Spector,
  • Gustavo A. Suarez,
  • Jeffery L. Meier and
  • David H. Price

9 April 2022

How human cytomegalovirus (HCMV) infection impacts the transcription of the host genome remains incompletely understood. Here, we examine the global consequences of infection of primary human foreskin fibroblasts (HFFs) on transcription by RNA polyme...

  • Article
  • Open Access
3 Citations
2,334 Views
19 Pages

Unprocessed snRNAs Are a Prognostic Biomarker and Correlate with a Poorer Prognosis in Colorectal Cancer

  • Víctor Escrich,
  • Cristina Romero-Aranda,
  • Rosario López,
  • María de Toro,
  • Ángela Metola,
  • Begoña Ezcurra,
  • Eva Gómez-Orte and
  • Juan Cabello

26 June 2024

The human Integrator complex is a set of 15 subunits that mediates processing of small nuclear RNAs (snRNAs), and which later participates in splicing messenger RNAs (mRNAs). In addition, it controls the pause and release of RNA polymerase II (RNA po...

  • Article
  • Open Access
651 Views
13 Pages

23 September 2025

The Ti-6242 titanium alloy samples were forged at 1020 °C (slightly above the β-transus) and subjected to ultra-short isothermal holding (0–320 s) prior to quenching to investigate the rapid microstructural evolution in the parent &bet...

  • Article
  • Open Access
11 Citations
3,282 Views
12 Pages

SAR296968, a Novel Selective Na+/Ca2+ Exchanger Inhibitor, Improves Ca2+ Handling and Contractile Function in Human Atrial Cardiomyocytes

  • Philipp Hegner,
  • Marzena Drzymalski,
  • Alexander Biedermann,
  • Bernadette Memmel,
  • Melanie Durczok,
  • Michael Wester,
  • Bernhard Floerchinger,
  • Zdenek Provaznik,
  • Christof Schmid and
  • Stefan Wagner
  • + 2 authors

Background: In reverse-mode, cardiac sodium-calcium exchanger (NCX) can increase the cytoplasmic Ca2+ concentration in response to high intracellular Na+ levels, which may contribute to diastolic contractile dysfunction. Furthermore, increased sponta...

  • Article
  • Open Access
5 Citations
3,457 Views
16 Pages

A New Insight into MYC Action: Control of RNA Polymerase II Methylation and Transcription Termination

  • Fiorella Scagnoli,
  • Alessandro Palma,
  • Annarita Favia,
  • Claudio Scuoppo,
  • Barbara Illi and
  • Sergio Nasi

MYC oncoprotein deregulation is a common catastrophic event in human cancer and limiting its activity restrains tumor development and maintenance, as clearly shown via Omomyc, an MYC-interfering 90 amino acid mini-protein. MYC is a multifunctional tr...

  • Article
  • Open Access
2 Citations
3,010 Views
25 Pages

13 November 2024

Mutations in the ryanodine receptor (RyR2) gene have been linked to arrhythmia and possibly sudden cardiac death (SCD) during acute emotional stress, physical activities, or catecholamine perfusion. The most prevalent disorder is catecholaminergic po...

  • Article
  • Open Access
3 Citations
2,495 Views
20 Pages

E. coli Cell Lysis Induced by Lys394 Enzyme Assisted by Magnetic Nanoparticles Exposed to Non-Heating Low-Frequency Magnetic Field

  • Azizbek D. Usvaliev,
  • Natalia G. Belogurova,
  • Konstantin V. Pokholok,
  • Alexander V. Finko,
  • Andrey N. Prusov,
  • Dmitry Yu. Golovin,
  • Konstantin A. Miroshnikov,
  • Yuri I. Golovin and
  • Natalia L. Klyachko

The spreading of microbial pathogens with more and more resistance to traditional low-molecular antibiotic agents demands new approaches to antibacterial therapy. The employment of bacteriophage enzymes capable of breaking bacterial cell walls has at...