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23 Results Found

  • Review
  • Open Access
29 Citations
12,545 Views
16 Pages

Influenza Virus RNA Synthesis and the Innate Immune Response

  • Sabrina Weis and
  • Aartjan J. W. te Velthuis

28 April 2021

Infection with influenza A and B viruses results in a mild to severe respiratory tract infection. It is widely accepted that many factors affect the severity of influenza disease, including viral replication, host adaptation, innate immune signalling...

(This article belongs to the Special Issue Viral Replication Complexes)
  • Review
  • Open Access
15 Citations
14,677 Views
22 Pages

2 April 2010

This mini-review summarizes the process of reverse-transcription, an obligatory step in retrovirus replication during which the retroviral RNA/DNA-dependent DNA polymerase (RT) copies the single-stranded genomic RNA to generate the double-stranded vi...

(This article belongs to the Special Issue Retroviral Enzymes)
  • Review
  • Open Access
4 Citations
3,390 Views
11 Pages

26 October 2023

N6-methyladenosine (m6A) is a dynamic post-transcriptional RNA modification. Recently, its role in viruses has led to the study of viral epitranscriptomics. m6A has been observed in viral genomes and alters the transcriptomes of both the host cell an...

(This article belongs to the Special Issue Molecular Plant-Microbe Interactions 2.0)
  • Review
  • Open Access
12 Citations
4,518 Views
19 Pages

14 December 2022

The relationship between conserved structural motifs and their biological function in the virus replication cycle is the interest of many researchers around the world. RNA structure is closely related to RNA function. Therefore, technological progres...

(This article belongs to the Special Issue Molecular Research on RNA Structure)
  • Review
  • Open Access
34 Citations
2,302 Views
12 Pages

Comparing Viral Metagenomic Extraction Methods

  • Jeanette Klenner,
  • Claudia Kohl,
  • Piotr W. Dabrowski and
  • Andreas Nitsche

A crucial step in the molecular detection of viruses in clinical specimens is the efficient extraction of viral nucleic acids. The total yield of viral nucleic acid from a clinical specimen is dependent on the specimen's volume, the initial virus con...

  • Article
  • Open Access
28 Citations
11,059 Views
24 Pages

The Efficacy of a Human-Ready miniMECP2 Gene Therapy in a Pre-Clinical Model of Rett Syndrome

  • Chanchal Sadhu,
  • Christopher Lyons,
  • Jiyoung Oh,
  • Indumathy Jagadeeswaran and ,
  • Steven J. Gray and
  • Sarah E. Sinnett
  • + 1 author+ 0 author

24 December 2023

Inactivating mutations and the duplication of methyl-CpG binding protein 2 (MeCP2), respectively, mediate Rett syndrome (RTT) and MECP2 duplication syndrome. These disorders underscore the conceptual dose-dependent risk posed by MECP2 gene therapy fo...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
9 Citations
3,485 Views
19 Pages

15 November 2023

The Varroa destructor mite is a devastating parasite of honey bees; however the negative effects of varroa parasitism are exacerbated by its role as an efficient vector of the honey bee pathogen, Deformed wing virus (DWV). While no direct treatment f...

(This article belongs to the Section Viral Immunology, Vaccines, and Antivirals)
  • Article
  • Open Access
30 Citations
9,999 Views
17 Pages

Comparison of Nucleic Acid Extraction Methods for a Viral Metagenomics Analysis of Respiratory Viruses

  • Marina Sabatier,
  • Antonin Bal,
  • Grégory Destras,
  • Hadrien Regue and ,
  • Grégory Quéromès,
  • Valérie Cheynet,
  • Bruno Lina,
  • Claire Bardel,
  • Karen Brengel-Pesce and
  • Laurence Josset
  • + 6 authors+ 1 author

Viral metagenomics next-generation sequencing (mNGS) is increasingly being used to characterize the human virome. The impact of viral nucleic extraction on virome profiling has been poorly studied. Here, we aimed to compare the sensitivity and sample...

(This article belongs to the Section Systems Microbiology)
  • Article
  • Open Access
2 Citations
5,354 Views
10 Pages

1 September 2024

Myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS) is a chronic disorder classified by the WHO as postviral fatigue syndrome (ICD-11 8E49 code). Diagnosing ME/CFS, often overlapping with fibromyalgia (FM), is challenging due to nonspecific s...

(This article belongs to the Section Viral Pathogens)
  • Article
  • Open Access
88 Citations
14,424 Views
13 Pages

A Comparison of Whole Genome Sequencing of SARS-CoV-2 Using Amplicon-Based Sequencing, Random Hexamers, and Bait Capture

  • Jalees A. Nasir,
  • Robert A. Kozak,
  • Patryk Aftanas,
  • Amogelang R. Raphenya and ,
  • Kendrick M. Smith,
  • Finlay Maguire,
  • Hassaan Maan,
  • Muhannad Alruwaili,
  • Arinjay Banerjee and
  • Samira Mubareka
  • + 12 authors+ 7 authors

15 August 2020

Genome sequencing of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is increasingly important to monitor the transmission and adaptive evolution of the virus. The accessibility of high-throughput methods and polymerase chain reaction (P...

(This article belongs to the Collection Coronaviruses)
  • Article
  • Open Access
7 Citations
3,857 Views
10 Pages

Detection of HEV RNA Using One-Step Real-Time RT-PCR in Farrow-to-Finish Pig Farms in Bulgaria

  • Gergana Lyubomirova Krumova-Valcheva,
  • Ilaria Di Bartolo,
  • Richard Piers Smith,
  • Eva Gyurova and ,
  • Gergana Mateva,
  • Mihail Milanov,
  • Albena Dimitrova,
  • Elke Burow and
  • Hristo Daskalov
  • + 4 authors+ 0 author

(1) Background: HEV is a zoonotic, foodborne pathogen. It is spread worldwide and represents a public health risk. The aim of this study was to evaluate the presence of HEV RNA in farrow-to-finish pig farms in different regions of Bulgaria; (2) Metho...

(This article belongs to the Special Issue Hepatitis E Virus (HEV) Infection among Humans and Animals: Epidemiology, Clinical Characteristics, Treatment and Prevention)
  • Article
  • Open Access
5 Citations
3,220 Views
14 Pages

Long-Term Surveillance of Food Products of Diverse Origins: A Five-Year Survey of Hepatitis A and Norovirus in Greece, 2019–2024

  • Rafail Fokas,
  • Zoi Anastopoulou,
  • Kalypso-Angeliki Koukouvini,
  • Maria-Eleni Dimitrakopoulou and ,
  • Zoi Kotsiri,
  • Eleftheria Chorti-Tripsa,
  • Chrysoula Kotsalou,
  • Dimosthenis Tzimotoudis and
  • Apostolos Vantarakis
  • + 4 authors+ 0 author

2 February 2025

This study examines at the prevalence and spread of Hepatitis A Virus (HAV) and norovirus GI/GII in local and imported food products in Greece over a five-year period (2019–2024). A total of two hundred sixty-six food samples were evaluated usi...

  • Article
  • Open Access
1 Citations
1,587 Views
16 Pages

Environmental Surveillance of Norovirus RNA in Restaurant Settings: Cleaning Materials as Primary Viral Reservoirs

  • Einas A. Osman,
  • Ahmed Al-Gafri,
  • Abrar Albahri,
  • Tasabih M. Saifeldin and ,
  • Ayat Zawateieh,
  • Safa. A. Abdelrahman and
  • Emad I. Hussein
  • + 2 authors+ 0 author

Background: Norovirus is the leading cause of viral gastroenteritis globally, with environmental persistence contributing significantly to transmission dynamics. Despite the recognized burden in the Middle East, systematic environmental surveillance...

(This article belongs to the Section Environmental Health)
  • Article
  • Open Access
4 Citations
2,655 Views
13 Pages

16 July 2023

We developed a convenient method for amplifying the complete SARS-CoV-2 sequence using in-house RT-PCR without virus culture. Forty-one stored throat swabs and blood specimens were collected from eight SARS-CoV-2 infections at multiple time points. T...

(This article belongs to the Special Issue Molecular Epidemiology of SARS-CoV-2)
  • Article
  • Open Access
6 Citations
2,961 Views
15 Pages

Microbiome Sex-Related Diversity in Non-Muscle-Invasive Urothelial Bladder Cancer

  • Konrad Bilski,
  • Natalia Żeber-Lubecka,
  • Maria Kulecka,
  • Michalina Dąbrowska and ,
  • Aneta Bałabas,
  • Jerzy Ostrowski,
  • Aleksandra Dobruch and
  • Jakub Dobruch
  • + 3 authors+ 0 author

Sex-specific discrepancies in bladder cancer (BCa) are reported, and new studies imply that microbiome may partially explain the diversity. We aim to provide characterization of the bladder microbiome in both sexes diagnosed with non-muscle-invasive...

(This article belongs to the Section Molecular Microbiology)
  • Review
  • Open Access
12 Citations
5,182 Views
25 Pages

Nucleic Acid Armor: Fortifying RNA Therapeutics through Delivery and Targeting Innovations for Immunotherapy

  • Yi Jiang,
  • Bolong Jiang,
  • Zhenru Wang,
  • Yuxi Li and ,
  • James Chung Wai Cheung,
  • Bohan Yin and
  • Siu Hong Dexter Wong
  • + 2 authors+ 0 author

15 August 2024

RNA is a promising nucleic acid-based biomolecule for various treatments because of its high efficacy, low toxicity, and the tremendous availability of targeting sequences. Nevertheless, RNA shows instability and has a short half-life in physiologica...

(This article belongs to the Section Molecular Pharmacology)
  • Article
  • Open Access
5 Citations
4,314 Views
26 Pages

Orthoparamyxovirinae C Proteins Have a Common Origin and a Common Structural Organization

  • Ada Roy,
  • Emeric Chan Mine,
  • Lorenzo Gaifas,
  • Cédric Leyrat and ,
  • Valentina A. Volchkova,
  • Florence Baudin,
  • Luis Martinez-Gil,
  • Viktor E. Volchkov,
  • David G. Karlin and
  • Marc Jamin
  • + 6 authors+ 1 author

1 March 2023

The protein C is a small viral protein encoded in an overlapping frame of the P gene in the subfamily Orthoparamyxovirinae. This protein, expressed by alternative translation initiation, is a virulence factor that regulates viral transcription, repli...

(This article belongs to the Special Issue Structural Disorder within Viral Proteins: A Themed Issue Dedicated to Doctor Sonia Longhi)
  • Review
  • Open Access
17 Citations
5,780 Views
20 Pages

CRISPR/Cas: An Emerging Toolbox for Engineering Virus Resistance in Plants

  • Xiaohui Zhan,
  • Fengjuan Zhang,
  • Ning Li,
  • Kai Xu and ,
  • Xiaodi Wang,
  • Shenghua Gao,
  • Yanxu Yin,
  • Weiling Yuan,
  • Weifang Chen and
  • Fei Wang
  • + 7 authors+ 2 authors

26 November 2024

Clustered regularly interspaced short palindromic repeats (CRISPR)/Cas have been recognized as powerful genome-editing tools in diverse eukaryotic species, including plants, and thus hold great promise for engineering virus resistance in plants. Neve...

  • Article
  • Open Access
11 Citations
4,280 Views
8 Pages

Assessment of ISO Method 15216 to Quantify Hepatitis E Virus in Bottled Water

  • Enric Cuevas-Ferrando,
  • Antonio Martínez-Murcia,
  • Alba Pérez-Cataluña,
  • Gloria Sánchez and
  • Walter Randazzo

Hepatitis E virus (HEV) is one of the causative agents of water-borne human viral hepatitis and considered in Europe an emerging zoonotic pathogen. Analysis of bottled water through a standard method validated for HEV can contribute towards the risk...

(This article belongs to the Special Issue Enteric Virus Detection: Recent Developments and Application in Food and Waters)
  • Article
  • Open Access
247 Views
19 Pages

Respiratory Viruses in the Air of Shared Indoor Environments: Multi-Country Molecular Surveillance Across Europe (TwinAIR)

  • Kalypso-Angeliki Koukouvini,
  • Rafail Fokas,
  • Zoi Anastopoulou,
  • Angeliki Chatziantoniou and ,
  • Zoi Kotsiri,
  • Niusha Larylavasani,
  • Christina Karamperi,
  • Despoina Fytili,
  • Eva Muñoz Navarro and
  • Apostolos Vantarakis
  • + 11 authors+ 6 authors

Indoor environments are the dominant setting for human exposure to respiratory viruses, yet routine molecular surveillance of indoor air remains rare outside single-site studies. Within the Horizon Europe TwinAIR project, a single harmonised workflow...

(This article belongs to the Section Environmental Monitoring and Management)
  • Article
  • Open Access
5 Citations
2,102 Views
9 Pages

Hepatitis E Virus Infection in Voluntary Blood Donors in the Russian Federation

  • Ilya A. Potemkin,
  • Karen K. Kyuregyan,
  • Anastasia A. Karlsen,
  • Olga V. Isaeva and ,
  • Vera S. Kichatova,
  • Maria A. Lopatukhina,
  • Fedor A. Asadi Mobarkhan,
  • Anna G. Zlobina,
  • Andrey V. Zheltobriukh and
  • Mikhail I. Mikhailov
  • + 12 authors+ 7 authors

28 March 2024

Transfusion-transmitted hepatitis E virus (HEV) infection is an increasing concern in many countries. We investigated the detection rate of HEV viremia in blood donors in Russia. A total of 20,405 regular repetitive voluntary non-renumerated blood do...

(This article belongs to the Special Issue Transfusion & Transplantation Transmitted Viral Infections)
  • Article
  • Open Access
3 Citations
5,233 Views
10 Pages

18 August 2021

The 35S promoter with a duplicated enhancer (frequently referred to as 2X35S) is a strong dicotyledonous plant-specific promoter commonly used in generating transgenic plants to enable high-level expression of genes of interest. It is also used to dr...

(This article belongs to the Section Plant Molecular Biology)
  • Article
  • Open Access
1 Citations
1,287 Views
20 Pages

Host Cell Protein MCM7 Interacts with NP1 of Minute Virus of Canines and Facilitates Viral DNA Replication

  • Zhiping Hei,
  • Xiang Ren,
  • Kai Ji,
  • Zhijie Zhang and ,
  • Binghan Chen and
  • Yuning Sun
  • + 1 author+ 0 author

Minute virus of canines (MVC), which is a member of the Bocaparvovirus genus, is a non-enveloped, single-stranded DNA virus that causes respiratory and gastrointestinal disease in canines, as well as causing infertility and fetal death in pregnant do...

(This article belongs to the Section Veterinary Microbiology)