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Microorganisms2026, 14(11), 2557;https://doi.org/10.3390/microorganisms14112557 
(registering DOI)

6 November 2026

Lactic acid bacteria (LAB) drive silage fermentation, yet the technology space recorded in the patent literature remains unmapped. This review analyses 1585 patent documents on LAB for animal feed and silage, retrieved from INCOPAT for 2016–202...

(This article belongs to the Special Issue Microorganisms in Silage—2nd Edition)
  • Article
  • Open Access

Continuous Cropping Stress on Ophiopogon japonicus and Alleviation by Maize Intercropping: Rhizosphere Microecological Mechanisms

  • Haitao Wang,
  • Yanli Xia,
  • Xia Zhou,
  • Juan Lin and ,
  • Shengwang Wang,
  • Yuxia Yang,
  • Tiezhu Chen and
  • Tingting Cheng
  • + 3 authors+ 0 author
Microorganisms2026, 14(11), 2555;https://doi.org/10.3390/microorganisms14112555 
(registering DOI)

6 November 2026

Long-term continuous cropping of Ophiopogon japonicus leads to continuous cropping problems, and this practice threatens the long-term viability of O. japonicus production. Currently, the intrinsic relationship between the deterioration of soil physi...

(This article belongs to the Section Microbiomes)
  • Article
  • Open Access

Candida auris in a Tertiary Neonatal Intensive Care Unit: A Retrospective Descriptive Study of Clinical and Infection-Control Management

  • Adriana Mihaela Dan,
  • Diana Iulia Vasilescu,
  • Gabriela Dogaroiu,
  • Sorin Liviu Vasilescu and
  • Monica Mihaela Cîrstoiu

Candida auris represents a growing challenge in neonatal intensive care units (NICUs), where extreme prematurity, invasive support, diagnostic uncertainty, and environmental persistence complicate both clinical management and infection prevention. We...

(This article belongs to the Special Issue Advances in Candida and Candidiasis)
  • Article
  • Open Access

Amuc_1100 Reproduces Protective Effects of Live and Pasteurized Akkermansia muciniphila Against Metabolic and Reproductive Dysfunction in PCOS Mice

  • Linyu Peng,
  • Zijiao Li,
  • Ying Tang,
  • Jianing Chen and ,
  • Zhiqiu He,
  • Xiaofeng Lv,
  • Liya Liu,
  • Yuan Li and
  • Liping Han
  • + 4 authors+ 0 author

Akkermansia muciniphila (AKK) and its pasteurized form (pAKK) have demonstrated metabolic benefits, but whether their outer membrane protein Amuc_1100 can reproduce these effects in polycystic ovary syndrome (PCOS) remains unclear. We compared live A...

(This article belongs to the Special Issue Probiotics in Human Health and Disease)
  • Article
  • Open Access

Descriptive Consensus Pathway Analysis Identifies Matrix-Dependent Metabolic Patterns During Wheat-Germ Fermentation

  • Riccardo Melis,
  • Vanna Sanna,
  • Angela Braca,
  • Pasquale Catzeddu and ,
  • Daniela Piras,
  • Valentina Tolu,
  • Piero Pasqualino Piu,
  • Tonina Roggio and
  • Roberto Anedda
  • + 4 authors+ 0 author

Wheat germ is a nutrient-rich cereal by-product with potential for valorization through fermentation. This study employed 1H NMR metabolomics to characterize the soluble metabolomic profiles of whole soft wheat germ (WWG) and industrially defatted du...

(This article belongs to the Special Issue Microbial Fermentation in Food Processing)
  • Article
  • Open Access

Dietary Tryptophan Supplementation Causes Distinct Hepatic Transcriptional and Fecal Microbial Responses in Dairy Calves

  • Yafang Bai,
  • Xiaojing Liu,
  • Xiaoting Zhou,
  • Shaoxiong Ji and ,
  • Yajing Wang,
  • Wei Wang,
  • Shengli Li,
  • Mao Tian and
  • Yangyi Hao
  • + 4 authors+ 0 author

Dietary tryptophan may influence early host and microbial development, but responses to different supplementation levels in dairy calves remain unclear. This study examined the effects of tryptophan supplementation on organ development, hematological...

(This article belongs to the Section Microbiomes)
  • Article
  • Open Access

Spatial Patterns and Driving Mechanisms of Nematode-Trapping Fungi in a Small Mountain Watershed: Cross-Scale Implications for Microbial Spatial Patterns

  • Cailian Yuan,
  • Xiaochao Pu,
  • Yongjiao Peng,
  • Wenrong Wang and ,
  • Yaoquan Yang,
  • Faping Zhou,
  • Xiaoyan Yang and
  • Wen Xiao
  • + 3 authors+ 0 author

Microbial spatial distribution patterns represent a fundamental question in microbial biogeography. However, existing evidence primarily stems from regional and global scales. This study focused on Nematode-Trapping Fungi (NTF) within the Lasha Mount...

(This article belongs to the Section Environmental Microbiology)
  • Article
  • Open Access

Plant species diversity can enhance soil organic carbon (SOC) storage, but the microbial processes associated with this relationship remain incompletely understood in subtropical forests. We surveyed 20 natural forest plots spanning a Shannon–W...

(This article belongs to the Section Environmental Microbiology)
  • Article
  • Open Access

Characterization of Prokaryotic Communities, Core Microbiome, and Functional Potential in the Tam Giang–Cau Hai Lagoon System

  • Vu Thi Thanh Tam,
  • Ha Gia Huy,
  • Nguyen Quang Khai,
  • Ngo Dai Phu and ,
  • Luu Phuc Loi and
  • Ton That Huu Dat
  • + 1 author+ 0 author

The Tam Giang–Cau Hai lagoon system comprises five interconnected lagoon units: Tam Giang, Tam Thanh–Sam, Ha Trung, Thuy Tu, and Cau Hai. To our knowledge, this is the first 16S rRNA-based characterization of prokaryotic communities encom...

(This article belongs to the Special Issue Microbial Ecology and Biogeochemical Functions in Sediment and Aquatic Environments)
  • Article
  • Open Access

Isolation of an Autochthonous Bacillus pumilus with Broad-Spectrum In Vitro Antagonistic Activity Against Bacteria Associated with Aulacomya atra Larval Mortality

  • Giuliana Judith Gomez-Chino,
  • Sheyla Amanda Zevallos-Feria,
  • Rodolfo Rafael Sanchez-Valencia,
  • Jordan I. Huanacuni and
  • Alejandro Marcelo Gonzales-Vargas

Intensive larviculture of the South American ribbed mussel (Aulacomya atra) is constrained by recurrent mortality during pre-metamorphic development. This study characterized cultivable bacteria associated with an acute 79% mortality event on day 12...

(This article belongs to the Special Issue Antibacterial Research and Biofilm Formation)
  • Article
  • Open Access

Effects of Fertilisation Practices on Nutrient Cycling Through the Regulation of Soil’s Physicochemical Properties and Microbial Communities

  • Qingying Meng,
  • Qiuju Wang,
  • Xinyu Li,
  • Zhuo Zhang and ,
  • Jiahe Zou,
  • Yanxia Liu,
  • Jingyang Li,
  • Xin Liu,
  • Yifei Luo and
  • Zhenhua Guo
  • + 5 authors+ 0 author

Continuous cultivation and fertiliser inputs restructure the spatial distribution of soil nutrient pools and drive the evolution of the underlying soil microenvironment. To elucidate the effects of long-term agricultural interventions on nutrient dyn...

(This article belongs to the Section Environmental Microbiology)
  • Review
  • Open Access

Recombinant collagen is an attractive alternative to animal-derived collagen for applications in tissue engineering, wound repair, regenerative medicine, and advanced aesthetic biomaterials. However, many microbial production hosts lack sufficient en...

(This article belongs to the Section Microbial Biotechnology)
  • Article
  • Open Access

The mRNA-LNP Vaccine Encoding Viral VP2 Confers Effective Protection Against Very Virulent Infectious Bursal Disease Virus (vvIBDV)

  • Yulong Zhang,
  • Ziwen Wu,
  • Hangbo Yu,
  • Guodong Wang and ,
  • Runhang Liu,
  • Dan Ling,
  • Erjing Ke,
  • Xianyun Liu,
  • Tengfei Xu and
  • Xiaole Qi
  • + 13 authors+ 8 authors

Infectious bursal disease (IBD) is an acute, highly contagious, and immunosuppressive disease of poultry caused by the infectious bursal disease virus (IBDV). For more than 30 years, the very virulent IBDV (vvIBDV) characterized by high mortality has...

(This article belongs to the Special Issue Poultry Pathogens and Poultry Diseases, 3rd Edition)
  • Review
  • Open Access

Irritable bowel syndrome is a disorder of gut–brain interaction characterized by recurrent abdominal pain and altered bowel habits. Interactions among intestinal microorganisms and their metabolites, the epithelial barrier, mucosal immunity, an...

(This article belongs to the Special Issue Correlations Between the Gastrointestinal Microbiome and Diseases)
  • Article
  • Open Access

Integrated Molecular and Serological Epizootic Monitoring of SARS-CoV-2 and Influenza A Virus in Animals in Kazakhstan

  • Gulnur D. Nakhanova,
  • Kamshat A. Shorayeva,
  • Aziz K. Nakhanov,
  • Olga V. Chervyakova and ,
  • Asankadyr T. Zhunushov,
  • Ainur S. Nurpeisova,
  • Nurlan S. Kozhabergenov,
  • Aibarys M. Melisbek,
  • Sabit K. Kokanov and
  • Kuandyk D. Zhugunissov
  • + 5 authors+ 0 author

Respiratory viruses with broad host ranges are relevant to veterinary epidemiology, biological safety, and One Health surveillance. This retrospective study integrated companion-animal and wildlife records to examine two complementary surveillance qu...

(This article belongs to the Section Veterinary Microbiology)
  • Review
  • Open Access

Lachnospiraceae and the Host Immune System: Mechanisms, Disease Associations and Precision-Oriented Intervention

  • Decheng Mao,
  • Qiuning Yang,
  • Chenqi Yang,
  • Jixiang Yuan and ,
  • Sujun Sun,
  • Xiaodan Dong,
  • Lizeng Peng and
  • Haiyu Ji
  • + 3 authors+ 0 author

The family Lachnospiraceae is among the most abundant obligately anaerobic taxa in the healthy human gut. Its core function—fermentation of dietary fibre to produce short-chain fatty acids (SCFAs), chiefly butyrate—makes it a key node lin...

(This article belongs to the Section Gut Microbiota)
  • Article
  • Open Access

Longitudinal Genomic Characterization of Ciprofloxacin-Resistant Enterobacterales Recovered from Mother–Infant Fecal Samples: ST1193 and PMQR Determinants in Non-ST1193 Isolates

  • Yaoguang Wu,
  • Xiaolin Yu,
  • Ziqing Liu,
  • Gaoxiang Sun and ,
  • Lu Liu,
  • Yuzhen Chen,
  • Shaoshuai Wu,
  • Dongxu Qin,
  • Shuang Wang and
  • Zengqiang Kou
  • + 5 authors+ 0 author

Escherichia coli sequence type 1193 (ST1193) is an emerging global high-risk clone, but its mother–infant gut carriage remains poorly characterized. Using selective culture, antimicrobial susceptibility testing, and whole-genome sequencing, we...

(This article belongs to the Section Antimicrobial Agents and Resistance)
  • Article
  • Open Access

Rhizosphere Soil Microbiome and Metabolome Responses of Sesame to Different Nitrate-to-Ammonium Nitrogen Ratios: A Multi-Omics Approach

  • Ruiqing Wang,
  • Rujie Lyu,
  • Juanmei Yan,
  • Fengjuan Lyu and ,
  • Junhai He,
  • Zhihua Zhang and
  • Hongxin Lin
  • + 2 authors+ 0 author

Understanding how rhizosphere microbial communities and root-associated metabolites respond to nitrate-to-ammonium nitrogen ratios is critical for optimizing sesame nitrogen management. Three NO3−-N:NH4+-N ratios (NB1 = 10:0, NB2 = 6:4, and NB4...

(This article belongs to the Special Issue Agricultural Microbial Ecology: Plant–Soil–Microbe Interactions)
  • Article
  • Open Access

Geographic Environment Outweighs Halophyte Identity in Shaping Nitrogen-Cycling Microbial Communities in Coastal Saline Soils

  • Yanjing Song,
  • Xiangyu Wang,
  • Jie Wang,
  • Yan Shan and ,
  • Rao Fu,
  • Xiaoyan Liang,
  • Chi Zhang,
  • Junlin Li,
  • Lan Ma and
  • Zhihua Qiao
  • + 5 authors+ 0 author

Halophytes are thought to recruit nitrogen (N)-cycling microorganisms that alleviate nutrient limitation in coastal saline soils, yet the relative importance of geographic environment versus halophyte identity in structuring these communities remains...

(This article belongs to the Section Environmental Microbiology)
  • Article
  • Open Access

Quercus chihuahuensis Leaf Extract and Its Selected Phenolic Constituents Limit Pseudomonas fluorescens Colonization of Stainless Steel

  • Elsa Daniela Othón-Díaz,
  • Brenda A. Silva-Espinoza,
  • Gustavo A. González-Aguilar,
  • Karina D. García-Orozco and ,
  • Cristóbal J. González-Pérez,
  • Melvin R. Tapia-Rodríguez,
  • Angela E. León-Robles and
  • Fernando Ayala-Zavala
  • + 3 authors+ 0 author

Pseudomonas fluorescens forms biofilms on food-contact surfaces, contributing to persistent contamination in food-processing environments. Plant-derived extracts rich in phenolic compounds offer promising alternatives for controlling bacterial coloni...

(This article belongs to the Special Issue Advances in Bacterial Biofilm and Motility)
  • Article
  • Open Access

Epidemiological Factors Associated with Ligula sp. (Cestoda: Diphyllobothriidae) Plerocercoid Infection in Freshwater Fish from Romania

  • Mara Emilia Balmoș,
  • Călin Mircea Gherman,
  • Ștefan Răileanu,
  • Daniel Ioan Cocan and ,
  • Călin Lațiu,
  • Ioan Oroian,
  • Petru Burduhos,
  • Dragoș Seucan and
  • Gianluca D’Amico
  • + 4 authors+ 0 author

Ligula spp. are widespread cestodes, but their epidemiology remains insufficiently characterized across Romanian freshwater ecosystems. This study investigated factors associated with Ligula sp. plerocercoid infection in fish. A total of 8547 fish re...

(This article belongs to the Special Issue Advances in Fish Health and Parasitology)
  • Article
  • Open Access

A Cryptic Plasmid from Stutzerimonas stutzeri DIA-8 Provides a Basis for Shuttle Vector Development in Escherichia coli and Pseudomonas putida

  • Natalia V. Trachtmann,
  • Eduard V. Babynin,
  • Shamil R. Nizamov,
  • Aynur K. Miftahov and ,
  • Trofim A. Lozhkarev and
  • Shamil Z. Validov
  • + 1 author+ 0 author

We characterized the cryptic plasmid pM27181 (15,416 bp) isolated from the Stutzerimonas stutzeri strain DIA-8. Sequencing and bioinformatic analysis allowed identification of 20 open reading frames, including genes involved in replication (rep), mob...

(This article belongs to the Section Molecular Microbiology and Immunology)
  • Article
  • Open Access

In Vitro Degradation of Uric Acid and Its Precursors by Limosilactobacillus fermentum DF2 Isolated from Salt-Free Pickled Vegetables Produced in Guizhou Province of China

  • Yu Zhang,
  • Qingshan Wu,
  • Yan Zhou,
  • Yulan Tan and ,
  • Dequan Zhu,
  • Zhanggen Liu,
  • Kexin Ren,
  • Yao Wang and
  • Fusheng Chen
  • + 4 authors+ 0 author

Hyperuricemia (HUA) is a metabolic disorder characterized by elevated serum uric acid (UA) levels resulting from the dysregulation of purine metabolism. The use of lactic acid bacteria (LAB) to alleviate HUA has attracted considerable attention. This...

(This article belongs to the Section Food Microbiology)
  • Article
  • Open Access

Prevalence and Molecular Subtype Distribution of Blastocystis sp. in Commercial Crossbred Pigs and Tibetan Pigs in Yunnan Province, China: A Cross-Sectional Study

  • Penghao Wei,
  • Yidan Wang,
  • Shaohong Yang,
  • Zhenghong He and ,
  • Luyang Wang,
  • Jianfa Yang,
  • Chunlian Song and
  • Fengcai Zou
  • + 3 authors+ 0 author

Blastocystis sp. is a common intestinal protist colonizing humans and a wide range of animals, and pigs are considered an important animal host for several subtypes with potential zoonotic relevance. Although porcine Blastocystis has previously been...

(This article belongs to the Section Veterinary Microbiology)
  • Article
  • Open Access

Hyperuricemia (HUA), a metabolic disorder strongly associated with gout and chronic kidney disease, has emerged as a target for probiotic-based complementary interventions. Three newly isolated lactic acid bacteria (LAB) strains were evaluated indivi...

(This article belongs to the Section Food Microbiology)
  • Article
  • Open Access

Development of an On-Site Rapid Detection Method for Porcine Pseudorabies Virus Using gD Protein-Based Monoclonal Antibody and Red Latex Microsphere Immunochromatographic Strip

  • Jie Gao,
  • Yumei Chen,
  • Yunchao Liu,
  • Jingming Zhou and ,
  • Chao Liang,
  • Hongliang Liu,
  • Xifang Zhu,
  • Enping Liu,
  • Sixuan Wu and
  • Aiping Wang
  • + 5 authors+ 0 author

Pseudorabies, an acute multi-host zoonotic infectious disease, is etiologically caused by the pseudorabies virus (PRV). As a naturally occurring infection in swine, pseudorabies imposes substantial economic losses on the global swine industry. Furthe...

(This article belongs to the Section Virology)
  • Review
  • Open Access
31 Views
31 Pages

Diabetes Mellitus and Infection Susceptibility: An Immunometabolic Interface

  • Faissal Al Zeir,
  • May Hamdi,
  • Renad Dawoud,
  • Ahmed Arabi and ,
  • Kais Nasib Al Shibli,
  • Awab Al-Ani,
  • Alaa Abdelhamid,
  • Hamad Abdel Hadi and
  • Mohammed Seed Ahmed
  • + 4 authors+ 0 author

Diabetes mellitus (DM) is a rapidly growing global health burden and a major driver of infection-related morbidity and mortality. Chronic hyperglycemia disrupts both innate and adaptive immunity through impaired complement activity, dysfunctional den...

(This article belongs to the Section Molecular Microbiology and Immunology)
  • Article
  • Open Access
10 Views
27 Pages

Semi-Synthetic Tylosin A Derivative T3 Inhibits Lumpy Skin Disease Virus Replication at the Viral DNA Replication Stage

  • Leilei Zhao,
  • Jing Qu,
  • Xinxin Li,
  • Yaoxin Tang and ,
  • Miao An,
  • Huan Liu,
  • Na Yu,
  • Xiubo Li and
  • Yiming Liu
  • + 4 authors+ 0 author

Lumpy skin disease virus (LSDV), a capripoxvirus that causes substantial animal-health and economic losses in cattle, remains a major veterinary concern, with few specific antiviral options available. Here, a series of semi-synthetic Tylosin A deriva...

(This article belongs to the Section Virology)
  • Review
  • Open Access
34 Views
38 Pages

Gut Microbiome-Guided Chemotherapy: Precision Pharmacomicrobiomic Conditioning of Drug Efficacy, Resistance, and Toxicity

  • Ahmed Mahdy,
  • Omneya M. Elbakry,
  • Mohey Eldin Hassan Shikhoun,
  • Radwa Rifaat and ,
  • Menna Al-Adl,
  • Rasha S. Seleem,
  • Mona Hamdy,
  • Mohamed H. A. Gadelmawla,
  • Ahmed A. Aly and
  • Basant Mostafa Gabr
  • + 5 authors+ 0 author

Chemotherapy remains foundational to oncology, yet treatment response, resistance, and gastrointestinal toxicity vary widely between patients in ways that tumor stage, molecular subtype, and host pharmacogenomics do not fully explain. The gut microbi...

(This article belongs to the Special Issue The Microbiome in Cancer Development, Progression and Therapeutic Response)
  • Review
  • Open Access
6 Views
22 Pages

The southern Adriatic Sea is an oligotrophic basin influenced by seasonal stratification, winter convection, inflow of Levantine Intermediate Water (LIW), and spreading of North Adriatic Dense Water (NAdDW). This review synthesizes knowledge on plank...

(This article belongs to the Special Issue Marine Microorganisms and Marine Ecology)
  • Article
  • Open Access
30 Views
16 Pages

The endonuclear symbiont Holospora obtusa invades the macronucleus of Paramecium caudatum using an infectious-form invasion tip containing a major 89-kDa periplasmic protein implicated in escape from the host digestive vacuole and macronuclear invasi...

(This article belongs to the Special Issue Paramecium as Modern Model System, 2nd Edition)
  • Article
  • Open Access
27 Views
15 Pages

Long-Term Chemical and Virucidal Stability of Multi-Component Veterinary Disinfectants: Relationships Between Active Ingredient Content and Virucidal Efficacy

  • Sok Song,
  • So-Hee Park,
  • Gong-Woo Park,
  • Yong Yi Joo and ,
  • Kyu-Sik Shin,
  • Hyun-Ok Ku and
  • Ji-Yeon Kim
  • + 2 authors+ 0 author

Long-term stability of veterinary disinfectants depends not only on the preservation of active-ingredient content but also on the maintenance of biological efficacy. This study evaluated the 24-month real-time chemical and virucidal stability of five...

(This article belongs to the Section Veterinary Microbiology)
  • Article
  • Open Access
59 Views
15 Pages

Bacterial collective behaviour emerges from the interplay of three distinct dynamical processes: quorum sensing (QS) mediates density-dependent gene regulation, chemotaxis directs movement along chemical gradients, and flocking aligns individual traj...

(This article belongs to the Section Molecular Microbiology and Immunology)
  • Article
  • Open Access
31 Views
23 Pages

Distinguishing active tuberculosis (ATB) from latent tuberculosis infection (LTBI) remains a critical unmet need in tuberculosis control. PANoptosis, a newly recognized form of programmed cell death (PCD) integrating pyroptosis, apoptosis, and necrop...

(This article belongs to the Special Issue Advances in the Diagnosis and Treatment of Mycobacterial Infections)
  • Article
  • Open Access
40 Views
23 Pages

Tenacibaculum maritimum is an important bacterial pathogen of marine fish, causing disease outbreaks in aquaculture worldwide and raising concerns about antimicrobial resistance. This study investigated the genomic diversity, predicted serotype distr...

(This article belongs to the Special Issue Advances in Aquaculture and Microorganisms)
  • Article
  • Open Access
28 Views
20 Pages

Genomic Surveillance and Phylogenetic Characterization of Seasonal Human Coronaviruses in Kazakhstan

  • Sardor Nuralibekov,
  • Marat Kumar,
  • Temirlan Sabyrzhan,
  • Yelizaveta Khan and ,
  • Maratzhan Maratov,
  • Aknur Mutaliyeva,
  • Amankeldi Sadanov,
  • Yermukhammet Kassymbekov,
  • Kobey Karamendin and
  • Aidyn Kydyrmanov
  • + 5 authors+ 0 author

Seasonal human coronaviruses (HCoVs) remain underrepresented in genomic surveil-lance in Central Asia. We applied species-specific tiled amplicon sequencing on the Oxford Nanopore Technologies platform to residual HCoV-positive respiratory samples co...

(This article belongs to the Special Issue Coronavirus: Epidemiology, Diagnosis, Pathogenesis and Control)
  • Article
  • Open Access
41 Views
15 Pages

Association Between Gut Microbiota Composition and Carotid Atherosclerosis in Asymptomatic Individuals Undergoing Brain Health Screening

  • Masao Watanabe,
  • Kouta Hatayama,
  • Hiroaki Masuyama,
  • Taku Hatano and ,
  • Nobutaka Hattori,
  • Takao Urabe and
  • Kazuo Yamashiro
  • + 2 authors+ 0 author

The gut microbiota has been implicated in cardiovascular disease, but its association with subclinical carotid atherosclerosis (AS) and potential sex differences remain incompletely understood. Associations between gut microbiota composition and subc...

(This article belongs to the Special Issue Interactions Between Gut Microbiota and Its Host in Health and Diseases)
  • Article
  • Open Access
47 Views
14 Pages

The fall armyworm, Spodoptera frugiperda, is a globally distributed agricultural pest. Metarhizium robertsii is an entomopathogenic fungus (EPF) with great application potential for the biological control of S. frugiperda. Nevertheless, to date, ther...

(This article belongs to the Section Molecular Microbiology and Immunology)
  • Correction
  • Open Access
49 Views
4 Pages

Correction: Bahrami et al. Occurrence, Species Distribution, and Antimicrobial Resistance of Listeria spp. in Foods from Retail and Farm Outlets in North Carolina, USA. Microorganisms 2026, 14, 1769

  • Akbar Bahrami,
  • Shurrita Davis,
  • Erute Magdalene Adongbede,
  • Janak Raj Khatiwada and ,
  • Rishipal Rastrapal Bansode and
  • Leonard Lamont Williams
  • + 1 author+ 0 author

There was an error in the original publication [...]

(This article belongs to the Section Food Microbiology)
  • Review
  • Open Access
94 Views
33 Pages

Microbiome-derived signatures are increasingly investigated as diagnostic biomarkers in children, yet their clinical readiness remains uncertain because pediatric microbiomes vary substantially with age, development, diet, medication exposure, geogra...

(This article belongs to the Section Microbiomes)
  • Article
  • Open Access
53 Views
21 Pages

Human gut microbiome recovery estimates depend on when samples are collected, which reference is used and how community differences are measured. We reanalyzed public profiles from three perturbation cohorts and two longitudinal comparison cohorts, t...

(This article belongs to the Section Microbiomes)
  • Review
  • Open Access
53 Views
29 Pages

Engineering Plant Microbiomes for Enhanced Growth and Stress Resilience

  • Ajay Kumar,
  • Amit Kaushik,
  • Abha Pandey,
  • Deepankar Sharma and ,
  • Niharika Bharti,
  • Mahaswetta Saikia,
  • Vivek Kumar Gaur,
  • Manoj Kumar Solanki,
  • Vijay Kumar and
  • Supriya Srivastava
  • + 5 authors+ 0 author

Plants are associated with diverse microbial communities that play a crucial role in plant growth promotion and improving stability under stress conditions. Microbiome engineering involves the targeted manipulation, recruitment, and optimization of p...

(This article belongs to the Special Issue Advances in the Plant Microbiome: Rhizosphere, Endosphere and Phyllosphere, Second Edition)
  • Article
  • Open Access
31 Views
24 Pages

Estuarine wetlands are significant stocks of soil organic carbon (SOC) and play an essential role in carbon sequestration. However, how natural salinity gradients shape carbon-fixing microbial communities and functional genes remains poorly understoo...

(This article belongs to the Special Issue Microbial Nutrient Cycling Mechanisms)
  • Article
  • Open Access
40 Views
20 Pages

The Chiral Isomers of Chlorogenic Acid Exert Distinct Antiviral Effects on Coxsackievirus A16 Infection

  • Ke Zheng,
  • Yiting Jiang,
  • Yingzi Cui,
  • Xiaoli Ji and ,
  • Yuxin Zhang,
  • Xi Zhu,
  • Xing-Yi Ge,
  • Helen Wang,
  • Hailan Yao and
  • Ye Qiu
  • + 5 authors+ 0 author

Coxsackievirus A16 (CVA16) is one of the major pathogens responsible for hand, foot, and mouth disease (HFMD), for which no specific antiviral therapy is currently available. Neochlorogenic acid (NCGA) and chlorogenic acid (CGA) are a pair of chiral...

(This article belongs to the Special Issue Viral Infection and Antiviral Drug Development)
  • Article
  • Open Access
41 Views
32 Pages

Root Endophytic Synthetic Communities Promote Oat Seedling Growth Through Functional Complementarity and Root Transcriptional Reprogramming

  • Cong Li,
  • Qigeqi Dong,
  • Yuanyuan Lu,
  • Weisheng Xu and ,
  • Chenyu Xu,
  • Bing Han and
  • Guofen Zhao
  • + 2 authors+ 0 author

Synthetic microbial communities (SynComs) offer a sustainable strategy for promoting crop growth, yet SynComs derived from oat endophytes and their mechanisms remain poorly understood. Here, endophytic bacteria were isolated from oat roots to constru...

(This article belongs to the Section Plant Microbe Interactions)
  • Article
  • Open Access
49 Views
15 Pages

Forecasting Models for Fire Blight Severity in Pear Orchards Under Tunisian Climatic Conditions

  • Naima Boughalleb-M’Hamdi,
  • Amel Fathallah,
  • Abdelhak Rhouma and
  • Marwa Fourati

Fire blight, caused by Erwinia amylovora, is a devastating bacterial disease affecting pear orchards and has been reported in Tunisia since 2012/2013. Accurate prediction of infection risk is essential for timely disease management. This study aimed...

(This article belongs to the Collection Feature Papers in Environmental Microbiology)
  • Article
  • Open Access
33 Views
15 Pages

Population Distribution of TMEM154 Genotypes in Sheep Breeds and Their Association with Maedi-Visna Virus Infection in Endemically Infected Flocks in the Netherlands

  • Karianne Peterson,
  • Fokke H. de Vries,
  • Aniek Garritsen,
  • Aniek van den Bout and ,
  • Carlijn ter Bogt-Kappert,
  • Rianne Buter and
  • Henriëtte Brouwer-Middelesch
  • + 2 authors+ 0 author

The maedi-visna virus (MVV) remains endemic in many agricultural countries, including the Netherlands, causing chronic disease, animal welfare concerns, and economic losses. In addition to conventional control programs based on serological surveillan...

(This article belongs to the Special Issue Diagnostic Strategies and Evolutionary Insights into Small Ruminant Lentiviruses)
  • Article
  • Open Access
101 Views
9 Pages

Antimicrobial Resistance in Bacteria Isolated from Dairy Farms in Agrarian Settlements of Pontal do Paranapanema, São Paulo, Brazil

  • Mario Augusto Reyes Aleman,
  • Alessandra Figueiredo de Castro Nassar,
  • Jeferson Silva Carvalho,
  • Natalia Carrillo Gaeta and ,
  • João Marcelo Brazão Protázio,
  • Gisela Gregória Choque,
  • Arthur Cobayashi,
  • Dirceu Matheus Freitas Virtuoso and
  • Lilian Gregory
  • + 4 authors+ 0 author

Family farming is central to Brazilian milk production, yet smallholder dairy systems in agrarian settlements often have limited access to veterinary assistance and microbiological diagnosis. This study describes the bacteria recovered from 2432 quar...

(This article belongs to the Special Issue Infectious Diseases in Animals)
  • Article
  • Open Access
32 Views
14 Pages

Differential Regulation of Virulence-Associated Proteins in Methicillin-Resistant Staphylococcus epidermidis Under Plasma Stress

  • Saghir Ahmad,
  • Hazir Rahman,
  • Muhammad Safwan Akram,
  • Javeria Mehboob and ,
  • Gavin H. Thomas,
  • Fuad M. Alzahrani,
  • Khalaf F. Alsharif,
  • Khalid J. Alzahrani and
  • Irfan Khattak
  • + 4 authors+ 0 author

Staphylococcus epidermidis encodes a variety of virulence- and pathogenicity-associated factors. These factors are insufficiently characterized owing to the absence of clearly defined criteria distinguishing clinically relevant S. epidermidis from co...

(This article belongs to the Special Issue Microbial Proteomics: Advances, Applications, and Insights)
  • Article
  • Open Access
119 Views
18 Pages

Implementation of an Antimicrobial Stewardship Program in a University Hospital and Its Impact on Antibiotic Use and Clinical Outcomes: A Quasi-Experimental Study

  • Silvia Di Bari,
  • Flavia Talamoni,
  • Carlo Torre,
  • Dario Bello and ,
  • Livia Bresciani,
  • Valgjine Kelmendi,
  • Vito Speciale,
  • Salvatore Iaquinandi,
  • Caterina Pasquazzi and
  • Miriam Lichtner
  • + 13 authors+ 8 authors

Antimicrobial resistance represents a major global health challenge, and hospital-based antimicrobial stewardship programs (ASPs) are essential for promoting appropriate antibiotic use. This study aimed to introduce and implement an ASP in a universi...

(This article belongs to the Topic Healthcare-Associated Infections and Antimicrobial Therapy)

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