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Most Cited

  • Review
  • Open Access
29 Citations
6,910 Views
22 Pages

16 November 2023

Actinobacteria from the genus Streptomyces feature complex primary and secondary metabolism, developmental cycle, and ability to produce a variety of natural products. These soil bacteria are major producers of antibiotics and other bioactive compoun...

  • Review
  • Open Access
8 Citations
12,157 Views
18 Pages

Applications of Serine Integrases in Synthetic Biology over the Past Decade

  • Fang Ba,
  • Yufei Zhang,
  • Luyao Wang,
  • Wan-Qiu Liu and
  • Jian Li

11 September 2023

Serine integrases are emerging as one of the most powerful biological tools for biotechnology. Over the past decade, many research papers have been published on the use of serine integrases in synthetic biology. In this review, we aim to systematical...

  • Review
  • Open Access
7 Citations
7,620 Views
27 Pages

7 March 2024

Type II polyketide synthase (PKS) systems are a rich source of structurally diverse polycyclic aromatic compounds with clinically relevant antibiotic and chemotherapeutic properties. The enzymes responsible for synthesizing the polyketide core, known...

  • Review
  • Open Access
5 Citations
2,259 Views
17 Pages

Polyamines play a pivotal role in regulating the growth and metabolic adaptation of microalgae, yet their integrative regulatory roles remain underexplored. This review advances a comprehensive perspective of microalgae growth, integrating polyamine...

  • Article
  • Open Access
4 Citations
2,694 Views
15 Pages

5 February 2025

Enzymes play an essential role in many different industries; however, their operating conditions are limited due to the loss of enzyme activity in the presence of proteases and at temperatures significantly above physiological conditions. One way to...

  • Review
  • Open Access
4 Citations
7,238 Views
17 Pages

6 June 2024

Recombinant protein expression is a fundamental aspect of both synthetic biology and biotechnology as well as a field unto itself. Microalgae, with their eukaryotic cellular machinery, high lipid content, cost-effective cultivation conditions, safety...

  • Article
  • Open Access
4 Citations
6,805 Views
29 Pages

17 May 2023

Periodontitis, a chronic inflammatory oral condition triggered by bacteria, archaea, viruses, and eukaryotic organisms, is a well-known and widespread disease around the world. While there are effective treatments for periodontitis, there are also se...

  • Article
  • Open Access
3 Citations
2,785 Views
10 Pages

Chemo-Enzymatic Synthesis of Bioactive Carbazole Derivatives

  • Saad Alrashdi,
  • Federica Casolari,
  • Kwaku Kyeremeh and
  • Hai Deng

4 January 2024

Carbazoles are key scaffolds of either antimicrobial/antiviral alkaloid natural products or therapeutics. As such, access to structurally diverse indole-containing carbazoles has attracted considerable attention. In this report, a pilot study is desc...

  • Article
  • Open Access
3 Citations
3,769 Views
25 Pages

4 January 2024

A number of antifungal drugs are based on polyene macrolides that cause severe side effects. Most of these compounds contain a single aminodeoxysugar, D-mycosamine. Toxicity can be reduced by increasing the extent of glycosylation. The aromatic hepta...

  • Article
  • Open Access
3 Citations
3,165 Views
16 Pages

17 May 2024

Microalgae have considerable potential as a renewable feedstock for biochemical and bioethanol production that can be employed in processes associated with carbon capture. Large-scale microalgae cultivations are often non-axenic and are often cohabit...

  • Review
  • Open Access
2 Citations
3,783 Views
13 Pages

9 January 2025

Atherosclerosis remains a major driver for cardiovascular disease (CVD), despite advancements in traditional risk factor management therapies. Recent evidence emphasizes the crucial role of the gut microbiome in the progression of atherosclerosis and...

  • Review
  • Open Access
2 Citations
5,107 Views
18 Pages

4 September 2024

Methane is the second largest contributor to global warming after carbon dioxide. Once it is released into the atmosphere, methane lingers for over 10 years, during which it traps heat, contributes to the formation of ground-level ozone, and affects...

  • Article
  • Open Access
2 Citations
2,960 Views
18 Pages

Structural Evolution of the Pharmaceutical Peptide Octreotide upon Controlled Relative Humidity and Temperature Variation

  • Maria Athanasiadou,
  • Christina Papaefthymiou,
  • Angelos Kontarinis,
  • Maria Spiliopoulou,
  • Dimitrios Koutoulas,
  • Marios Konstantopoulos,
  • Stamatina Kafetzi,
  • Kleomenis Barlos,
  • Kostas K. Barlos and
  • Irene Margiolaki
  • + 4 authors

4 June 2024

Octreotide is the first synthetic peptide hormone, consisting of eight amino acids, that mimics the activity of somatostatin, a natural hormone in the body. During the past decades, advanced instrumentation and crystallographic software have establis...

  • Review
  • Open Access
2 Citations
5,525 Views
18 Pages

Tropical Fruit Virus Resistance in the Era of Next-Generation Plant Breeding

  • Marcella Silva Vieira,
  • Rafael Lara Rezende Cabral,
  • Luíza Favaratto,
  • Laiane Silva Maciel,
  • André da Silva Xavier,
  • Francisco Murilo Zerbini and
  • Patricia M. B. Fernandes

8 July 2024

Plant viral diseases constitute a major contributor to agricultural production losses, significantly impacting the economies of exporting countries by more than USD 30 billion annually. Understanding and researching the biology and genomics of viruse...

  • Article
  • Open Access
2 Citations
4,587 Views
13 Pages

25 April 2023

Rheumatoid arthritis (RA) is one of the most common autoimmune diseases, affecting 0.5% to 1% of the population. It could ultimately result in joint destruction, functional decline, work disability, and enhanced mortality. Cyclic citrullinated peptid...

  • Article
  • Open Access
2 Citations
3,793 Views
14 Pages

An Engineered Escherichia coli Community for Studying Quorum Sensing

  • Yuwei Li,
  • Justin E. Clarke,
  • Alex J. O’Neill,
  • Francisco M. Goycoolea and
  • James Smith

7 July 2023

In bacterial communities, quorum sensing (QS) is a process mediated via chemical signalling that individuals use to coordinate their collective phenotypes. It is closely associated with pathogenic traits such as virulence factor production and antibi...

  • Article
  • Open Access
2 Citations
2,824 Views
15 Pages

8 February 2024

Removal of fixed nitrogen compounds such as ammonium and nitrite from wastewater is of critical importance for balancing the nitrogen cycle and protecting aquatic environments from eutrophication. ANaerobic AMMonium OXidising (ANAMMOX) bacteria have...

  • Article
  • Open Access
2 Citations
1,045 Views
15 Pages

ChronoSort: Revealing Hidden Dynamics in AlphaFold3 Structure Predictions

  • Matthew J. Argyle,
  • William P. Heaps,
  • Corbyn Kubalek,
  • Spencer S. Gardiner,
  • Bradley C. Bundy and
  • Dennis Della Corte

14 November 2025

Protein function emerges from dynamic conformational changes, yet structure prediction methods provide only static snapshots. While AlphaFold3 (AF3) predicts protein structures, the potential for extracting dynamic information from its ensemble predi...

  • Review
  • Open Access
2 Citations
7,201 Views
34 Pages

A Guide in Synthetic Biology: Designing Genetic Circuits and Their Applications in Stem Cells

  • Karim S. Elnaggar,
  • Ola Gamal,
  • Nouran Hesham,
  • Sama Ayman,
  • Nouran Mohamed,
  • Ali Moataz,
  • Emad M. Elzayat and
  • Nourhan Hassan

22 July 2025

Stem cells, unspecialized cells with regenerative and differentiation capabilities, hold immense potential in regenerative medicine, exemplified by hematopoietic stem cell transplantation. However, their clinical application faces significant limitat...

  • Review
  • Open Access
1 Citations
5,605 Views
18 Pages

6 January 2025

Pancreatic cancer is the result of mutations in crucial genetic markers like KRAS and TP53 that make treatment challenging. This article discusses how CRISPR Cas9 technology can be combined with these markers to create treatments. CRISPR allows for t...

  • Article
  • Open Access
1 Citations
3,594 Views
14 Pages

5 February 2024

The glutamate ionotropic kainate receptors, encoded by the GRIK gene family, are composed of four subunits and function as ligand-activated ion channels. They play a critical role in regulating synaptic transmission and various synaptic receptors&rsq...

  • Article
  • Open Access
1 Citations
3,399 Views
14 Pages

Membrane Engineering for Carotenoid Production in Escherichia coli

  • Jiaqing Li,
  • Eileen Bates,
  • Dylan S. Perera,
  • Andreea M. Palage and
  • Valerie C. A. Ward

10 October 2024

Carotenoids are a class of highly hydrophobic compounds synthesized by plants in limited quantities. This study explores the potential for increasing the production yield of lycopene, a typical carotenoid compound, through engineered Escherichia coli...

  • Article
  • Open Access
1 Citations
1,810 Views
10 Pages

27 April 2025

The SARS-CoV-2 virus, which causes COVID-19, has rapidly evolved, producing highly transmissible variants like Omicron. Non-structural protein 6 (NSP6) is essential for viral replication and immune evasion. This study analyzed the NSP6 protein of the...

  • Review
  • Open Access
1 Citations
4,846 Views
21 Pages

Plant Transformation and Genome Editing for Precise Synthetic Biology Applications

  • Sharathchandra Kambampati,
  • Pankaj K. Verma and
  • Madhusudhana R. Janga

27 June 2025

Synthetic biology (SynBio) is an emerging interdisciplinary field that applies engineering principles to the design and construction of novel biological systems or the redesign of existing natural systems for new functions. As autotrophs with complex...

  • Article
  • Open Access
1 Citations
2,069 Views
10 Pages

Exploring the Interactions between Human microRNAs and the Ilheus Virus Genome

  • Joyhare Barbosa Souza and
  • Samir Mansour Moraes Casseb

26 October 2023

MicroRNAs (miRNAs) are small non-coding RNA molecules that play a fundamental role in the regulation of gene expression in humans. There has been a growing interest in investigating the interactions between human miRNAs and viruses to better understa...

  • Review
  • Open Access
1 Citations
4,648 Views
20 Pages

Synthetic Proteins in Dental Applications

  • Christian Andrea Lopez-Ayuso,
  • Benjamin Aranda-Herrera,
  • Dulce Guzman-Rocha,
  • Patricia Alejandra Chavez-Granados and
  • Rene Garcia-Contreras

27 December 2023

Biotechnology and artificial intelligence have sparked a revolution in dentistry, with a focus on restoring natural tissue functions. This transformation has given rise to bioactive materials, inspired by biomimetics, aimed at replicating the process...

  • Article
  • Open Access
1 Citations
3,096 Views
13 Pages

Development of SynBio Tools for Pseudomonas chlororaphis: A Versatile Non-Pathogenic Bacterium Host

  • Miguel Angel Bello-González,
  • Leidy Patricia Bedoya-Perez,
  • Miguel Alberto Pantoja-Zepeda and
  • Jose Utrilla

27 March 2024

Pseudomonas chlororaphis ATCC 9446 is a non-pathogenic bacterium associated with the rhizosphere. It is commonly used as a biocontrol agent against agricultural pests. This organism can grow on a variety of carbon sources, has a robust secondary meta...

  • Article
  • Open Access
1 Citations
3,359 Views
16 Pages

5 May 2024

Elastin-like polypeptides (ELPs) are popular biomaterials due to their reversible, temperature-dependent phase separation and their tunability, which is achievable by evolving procedures in recombinant technology. In particular, recursive direction l...

  • Article
  • Open Access
1 Citations
2,995 Views
13 Pages

3DNA: A Tool for Sculpting Brick-Based DNA Nanostructures

  • Shikhar Kumar Gupta,
  • Foram Joshi,
  • Amay Agrawal,
  • Sourav Deb,
  • Martin Sajfutdinow,
  • Dixita Limbachiya,
  • David M. Smith and
  • Manish K. Gupta

18 December 2023

To assist in the speed and accuracy of designing brick-based DNA nanostructures, we introduce a lightweight software suite 3DNA that can be used to generate complex structures. Currently, implementation of this fabrication strategy involves working w...

  • Article
  • Open Access
2,190 Views
14 Pages

27 January 2025

Synechocystis sp. PCC 6803 is a highly promising organism for the production of diverse recombinant compounds, including biofuels. However, conventional genetic engineering in Synechocystis presents challenges due to its highly polyploid genome, whic...

  • Review
  • Open Access
2,287 Views
14 Pages

3 March 2025

The carbohydrate antigen Sda is expressed on the cells and secretions of the vast majority of Caucasians. The epitope is formed by a terminal GalNAc residue β4-linked to an α3-sialylated galactose. Different carbohydrate chains N- or O-lin...

  • Article
  • Open Access
20,956 Views
13 Pages

16 August 2024

Despite the recent pandemic, the origin of its causative agent, SARS-CoV-2, remains controversial. This study identifies several prototype SARS-CoV-2 variants (proto-variants) that are descendants of the Wuhan variant. A thorough evaluation of the ev...

  • Article
  • Open Access
2,837 Views
13 Pages

The Crystal Structure of Thermal Green Protein Q66E (TGP-E) and Yellow Thermostable Protein (YTP-E) E148D

  • Matthew R. Anderson,
  • Caitlin M. Padgett,
  • Victoria O. Ogbeifun and
  • Natasha M. DeVore

23 August 2024

Thermal green protein Q66E (TGP-E) has previously shown increased thermal stability compared to thermal green protein (TGP), a thermal stable fluorescent protein produced through consensus and surface protein engineering. In this paper, we describe t...

  • Article
  • Open Access
6,311 Views
14 Pages

Metformin Lowers Plasma Triacylglycerol Levels in Mice with Impaired Carnitine Biosynthesis and Fatty Liver

  • Bodil Bjørndal,
  • Tra-My Thi Le,
  • Elin Strand,
  • Lise Madsen and
  • Rolf K. Berge

3 July 2024

The antidiabetic drug metformin has a wide range of metabolic effects and may also reduce the risk of obesity-related diseases. The aim of the current study was to investigate if metformin could counteract meldonium-induced fatty liver. Four groups o...

  • Article
  • Open Access
1,865 Views
13 Pages

Efficient Stereoselective Biotransformation of Prochiral Carbonyls by Endophytic Fungi from Handroanthus impetiginosus

  • Valmore Henrique Pereira dos Santos,
  • Monielly Vasconcellos Pereira de Souza,
  • Maurício Moraes Victor,
  • Valéria Belli Riatto and
  • Eliane Oliveira Silva

5 July 2024

Endophytic microorganisms are promising sources for new biocatalysts as they must deal with their host plants’ chemicals by developing adaptative strategies, such as enzymatic pathways. As part of our efforts in selecting endophytic strains as...

  • Review
  • Open Access
5,694 Views
25 Pages

Why Extracellular Vesicles Are Attractive Vehicles for RNA-Based Therapies?

  • Farah Aqel,
  • Kristin Schneider,
  • Denise Hartung,
  • Kathrin Schwarz and
  • Olga Shatnyeva

5 December 2024

Extracellular Vesicles (EVs) are a focus of intense research worldwide, with many groups exploring their potential for both diagnostic and therapeutic applications. Researchers have characterized EVs into various subtypes, modified common surface mar...

  • Review
  • Open Access
3,412 Views
15 Pages

20 November 2024

Bistability is a fundamental phenomenon in nature. In biochemical systems, it creates digital, switch-like outputs from the constituent chemical concentrations and activities, and it is often associated with hysteresis in such systems. Here, we first...

  • Review
  • Open Access
6,313 Views
27 Pages

Cell-Free Protein Synthesis Reactor Formats: A Brief History and Analysis

  • Dallin M. Chipman,
  • Anna C. Woolley,
  • Davu N. Chau,
  • William A. Lance,
  • Joseph P. Talley,
  • Tyler P. Green,
  • Benjamin C. Robbins and
  • Bradley C. Bundy

1 July 2025

Cell-free protein synthesis (CFPS) has transformed protein production capabilities by eliminating cellular constraints, enabling the rapid expression of difficult-to-produce proteins in an open, customizable environment. As CFPS applications expand f...

  • Review
  • Open Access
1,679 Views
22 Pages

Unlocking MSC Potential: Metabolic Reprogramming via Synthetic Biology Approaches

  • Natalia Trufanova,
  • Oleh Trufanov and
  • Oleksandr Petrenko

17 September 2025

Metabolic engineering of mesenchymal stem/stromal cells (MSCs) represents a compelling frontier for advanced cellular therapies, enabling the precise tuning of their biological outputs. This feature paper examines the critical role of engineered cult...

  • Feature Paper
  • Article
  • Open Access
1,219 Views
15 Pages

Analysis and Application of Translation-Enhancing Peptides for Improved Production of Proteins Containing Polyproline

  • Akimichi Yoshino,
  • Riko Shimoji,
  • Yuma Nishikawa,
  • Hideo Nakano and
  • Teruyo Ojima-Kato

3 October 2025

Polyproline residues are well known to induce ribosomal stalling during translation. Our previous work demonstrated that inserting a short translation-enhancing peptide, Ser-Lys-Ile-Lys (SKIK), immediately upstream of such difficult-to-translate sequ...

  • Article
  • Open Access
1,521 Views
21 Pages

Self-Energy-Harvesting Pacemakers: An Example of Symbiotic Synthetic Biology

  • Kuntal Kumar Das,
  • Ashutosh Kumar Dubey,
  • Bikramjit Basu and
  • Yogendra Narain Srivastava

4 October 2025

While synthetic biology has traditionally focused on creating biological systems often through genetic engineering, emerging technologies, for example, implantable pacemakers with integrated piezo-electric and tribo-electric materials are beginning t...

  • Article
  • Open Access
631 Views
22 Pages

6 November 2025

Researchers strive to exploit kinetic potentials of multistep reactions by positioning enzymes in a regulated fashion. Therein, the proliferating cell nuclear antigen (PCNA) from Sulfolobus solfataricus is a promising biomolecular tool due to its ext...

  • Review
  • Open Access
472 Views
15 Pages

8 December 2025

Nucleic acid-based gene interfering and editing molecules, such as antisense oligonucleotides, ribozymes, small interfering RNAs (siRNAs), and CRISPR-Cas9-associated guide RNAs, are promising gene-targeting agents for therapeutic applications. Cancer...

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SynBio - ISSN 2674-0583