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25 Results Found

  • Article
  • Open Access
5 Citations
1,883 Views
21 Pages

29 November 2024

Some lactic acid bacteria (LAB) produce antibacterial substances such as bacteriocins, making them promising candidates for food preservation. In our study, Lactiplantibacillus pentosus PCZ4—a strain with broad-spectrum antibacterial activity&m...

  • Article
  • Open Access
15 Citations
3,741 Views
13 Pages

Transporter Protein-Guided Genome Mining for Head-to-Tail Cyclized Bacteriocins

  • Daniel Major,
  • Lara Flanzbaum,
  • Leah Lussier,
  • Carly Davies,
  • Kristian Mark P. Caldo and
  • Jeella Z. Acedo

28 November 2021

Head-to-tail cyclized bacteriocins are ribosomally synthesized antimicrobial peptides that are defined by peptide backbone cyclization involving the N- and C- terminal amino acids. Their cyclic nature and overall three-dimensional fold confer superio...

  • Article
  • Open Access
15 Citations
3,955 Views
22 Pages

7 August 2023

With the increase in antimicrobial resistance and the subsequent demand for novel therapeutics, the deep-sea fish microbiome can be a relatively untapped source of antimicrobials, including bacteriocins. Previously, bacterial isolates were recovered...

  • Article
  • Open Access
8 Citations
3,990 Views
21 Pages

Mining Biosynthetic Gene Clusters in Carnobacterium maltaromaticum by Interference Competition Network and Genome Analysis

  • Marco Túlio Pardini Gontijo,
  • Nancy E. Ramia,
  • Alexis Dijamentiuk,
  • Annelore Elfassy,
  • Samir Taha,
  • Cécile Mangavel,
  • Anne-Marie Revol-Junelles and
  • Frédéric Borges

Carnobacterium maltaromaticum is a non-starter lactic acid bacterium (LAB) of interest in the dairy industry for biopreservation. This study investigated the interference competition network and the specialized metabolites biosynthetic gene clusters...

  • Review
  • Open Access
51 Citations
10,556 Views
32 Pages

Biosynthesis and Production of Class II Bacteriocins of Food-Associated Lactic Acid Bacteria

  • Tingting Zhang,
  • Yu Zhang,
  • Lin Li,
  • Xiuqi Jiang,
  • Zhuo Chen,
  • Fan Zhao and
  • Yanglei Yi

Bacteriocins are ribosomally synthesized peptides made by bacteria that inhibit the growth of similar or closely related bacterial strains. Class II bacteriocins are a class of bacteriocins that are heat-resistant and do not undergo extensive posttra...

  • Article
  • Open Access
18 Citations
4,895 Views
22 Pages

New Insight into Antimicrobial Compounds from Food and Marine-Sourced Carnobacterium Species through Phenotype and Genome Analyses

  • Simon Begrem,
  • Flora Ivaniuk,
  • Frédérique Gigout-Chevalier,
  • Laetitia Kolypczuk,
  • Sandrine Bonnetot,
  • Françoise Leroi,
  • Olivier Grovel,
  • Christine Delbarre-Ladrat and
  • Delphine Passerini

Carnobacterium maltaromaticum and Carnobacterium divergens, isolated from food products, are lactic acid bacteria known to produce active and efficient bacteriocins. Other species, particularly those originating from marine sources, are less studied....

  • Article
  • Open Access
9 Citations
3,933 Views
19 Pages

22 February 2024

Due to their potential application as an alternative to antibiotics, bacteriocins, which are ribosomally synthesized antimicrobial peptides produced by bacteria, have received much attention in recent years. To identify bacteriocins within marine bac...

  • Review
  • Open Access
78 Citations
12,176 Views
19 Pages

Staphylococcus aureus is an important pathogen of both humans and animals, implicated in a wide range of infections. The emergence of antibiotic resistance has resulted in S. aureus strains that are resistant to almost all available antibiotics, maki...

  • Article
  • Open Access
11 Citations
2,891 Views
11 Pages

Thermophilin 13: In Silico Analysis Provides New Insight in Genes Involved in Bacteriocin Production

  • Francesco Salini,
  • Lucilla Iacumin,
  • Giuseppe Comi and
  • Leon M. T. Dicks

Bacteriocins are a large family of ribosomally synthesised proteinaceous toxins that are produced by bacteria and archaea and have antimicrobial activity against closely related species to the producer strain. Antimicrobial proteinaceous compounds ar...

  • Article
  • Open Access
16 Citations
4,223 Views
15 Pages

Streptococcus salivarius 24SMBc Genome Analysis Reveals New Biosynthetic Gene Clusters Involved in Antimicrobial Effects on Streptococcus pneumoniae and Streptococcus pyogenes

  • Gaia Vertillo Aluisio,
  • Ambra Spitale,
  • Luca Bonifacio,
  • Grete Francesca Privitera,
  • Aldo Stivala,
  • Stefania Stefani and
  • Maria Santagati

Streptococcus salivarius 24SMBc is an oral probiotic with antimicrobial activity against the otopathogens Streptococcus pyogenes and Streptococcus pneumoniae. Clinical studies have reinforced its role in reducing the recurrence of upper respiratory t...

  • Article
  • Open Access
3 Citations
3,535 Views
21 Pages

Aeromonas allosaccharophila Strain AE59-TE2 Is Highly Antagonistic towards Multidrug-Resistant Human Pathogens, What Does Its Genome Tell Us?

  • Sheila da Silva,
  • Fernanda Alves de Freitas Guedes,
  • João Ricardo Vidal Amaral,
  • José Roberto de Assis Ribeiro,
  • Yuri Pinheiro Alves de Souza,
  • Ângela Correa de Freitas-Almeida,
  • Fabiano Lopes Thompson,
  • Rommel Thiago Jucá Ramos,
  • Andrew Steven Whiteley and
  • Andrew Macrae
  • + 1 author

26 September 2022

Multidrug-resistant bacteria are of critical importance and a problem for human health and food preservation; the discovery of new antimicrobial substances to control their proliferation is part of the solution. This work reports on 57 antagonistic A...

  • Review
  • Open Access
6 Citations
2,723 Views
15 Pages

28 August 2024

The rapid evolution of drug resistance is one of the greatest health issues of the 21st century. There is an alarming situation to find new therapeutic strategies or candidate drugs to tackle ongoing multi-drug resistance development. The marine envi...

  • Article
  • Open Access
12 Citations
4,996 Views
17 Pages

Mining Biosynthetic Gene Clusters of Pseudomonas vancouverensis Utilizing Whole Genome Sequencing

  • Prabin Tamang,
  • Arjun Upadhaya,
  • Pradeep Paudel,
  • Kumudini Meepagala and
  • Charles L. Cantrell

Natural product (NP)-based pesticides have emerged as a compelling alternative to traditional chemical fungicides, attracting substantial attention within the agrochemical industry as the world is pushing toward sustainable and environmentally friend...

  • Article
  • Open Access
24 Citations
6,151 Views
21 Pages

Genome Mining for Antimicrobial Compounds in Wild Marine Animals-Associated Enterococci

  • Janira Prichula,
  • Muriel Primon-Barros,
  • Romeu C. Z. Luz,
  • Ícaro M. S. Castro,
  • Thiago G. S. Paim,
  • Maurício Tavares,
  • Rodrigo Ligabue-Braun,
  • Pedro A. d’Azevedo,
  • Jeverson Frazzon and
  • Ana P. G. Frazzon
  • + 2 authors

6 June 2021

New ecosystems are being actively mined for new bioactive compounds. Because of the large amount of unexplored biodiversity, bacteria from marine environments are especially promising. Further, host-associated microbes are of special interest because...

  • Article
  • Open Access
6 Citations
3,815 Views
18 Pages

Genomic and Functional Evaluation of Two Lacticaseibacillus paracasei and Two Lactiplantibacillus plantarum Strains, Isolated from a Rearing Tank of Rotifers (Brachionus plicatilis), as Probiotics for Aquaculture

  • Diogo Contente,
  • Lara Díaz-Formoso,
  • Javier Feito,
  • Pablo E. Hernández,
  • Estefanía Muñoz-Atienza,
  • Juan Borrero,
  • Patrícia Poeta and
  • Luis M. Cintas

1 January 2024

Aquaculture plays a crucial role in meeting the increasing global demand for food and protein sources. However, its expansion is followed by increasing challenges, such as infectious disease outbreaks and antibiotic misuse. The present study focuses...

  • Article
  • Open Access
1 Citations
3,265 Views
21 Pages

Analysis of the Probiotic Potential of Lactiplantibacillus plantarum LB1_P46 Isolated from the Mexican Fermented Pulque Beverage: A Functional and Genomic Analysis

  • Martha Giles-Gómez,
  • Ximena Morales Huerta,
  • Rodolfo Pastelin-Palacios,
  • Constantino López-Macías,
  • Mayrene Sarai Flores Montesinos,
  • Fernando Astudillo-Melgar and
  • Adelfo Escalante

The traditional Mexican fermented beverage pulque has been considered a healthy product for treating gastrointestinal disorders. Lactic acid bacteria (LAB) have been identified as one of the most abundant microbial groups during pulque fermentation....

  • Article
  • Open Access
15 Citations
3,896 Views
16 Pages

5 September 2020

A novel Weissella cibaria strain UTNGt21O from the fruit of the Solanum quitoense (naranjilla) shrub produces a peptide that inhibits the growth of both Salmonella enterica subsp. enterica ATCC51741 and Escherichia coli ATCC25922 at different stages....

  • Article
  • Open Access
19 Citations
7,118 Views
25 Pages

8 May 2019

The recent rise in antibiotic and chemotherapeutic resistance necessitates the search for novel drugs. Potential therapeutics can be produced by specialized metabolism gene clusters (SMGCs). We mined for SMGCs in metagenomic samples from Atlantis II...

  • Article
  • Open Access
23 Citations
7,603 Views
17 Pages

Bioactivity Screening and Gene-Trait Matching across Marine Sponge-Associated Bacteria

  • Asimenia Gavriilidou,
  • Thomas Andrew Mackenzie,
  • Pilar Sánchez,
  • José Ruben Tormo,
  • Colin Ingham,
  • Hauke Smidt and
  • Detmer Sipkema

30 January 2021

Marine sponges harbor diverse microbial communities that represent a significant source of natural products. In the present study, extracts of 21 sponge-associated bacteria were screened for their antimicrobial and anticancer activity, and their geno...

  • Article
  • Open Access
575 Views
25 Pages

10 October 2025

Thermophilic microorganisms represent an untapped reservoir of thermostable biocatalysts and stress-resilient biomolecules for industrial biotechnology. Aeribacillus pallidus, a Gram-positive moderate thermophile, has attracted attention for its enzy...

  • Article
  • Open Access
19 Citations
6,158 Views
31 Pages

6 September 2018

Lanthipeptides are ribosomally synthesized and post-translationally modified polycyclic peptides. Lanthipeptides that have antimicrobial activity are known as lantibiotics. Accordingly, the discovery of novel lantibiotics constitutes a possible solut...

  • Review
  • Open Access
79 Citations
12,264 Views
25 Pages

Bioactive Secondary Metabolites from Octocoral-Associated Microbes—New Chances for Blue Growth

  • Inês Raimundo,
  • Sandra G. Silva,
  • Rodrigo Costa and
  • Tina Keller-Costa

4 December 2018

Octocorals (Cnidaria, Anthozoa Octocorallia) are magnificent repositories of natural products with fascinating and unusual chemical structures and bioactivities of interest to medicine and biotechnology. However, mechanistic understanding of the cont...

  • Article
  • Open Access
12 Citations
6,282 Views
23 Pages

Genome Mining and Comparative Pathogenomic Analysis of An Endemic Methicillin-Resistant Staphylococcus Aureus (MRSA) Clone, ST612-CC8-t1257-SCCmec_IVd(2B), Isolated in South Africa

  • Daniel Gyamfi Amoako,
  • Anou M. Somboro,
  • Akebe Luther King Abia,
  • Mushal Allam,
  • Arshad Ismail,
  • Linda A. Bester and
  • Sabiha Y. Essack

27 September 2019

This study undertook genome mining and comparative genomics to gain genetic insights into the dominance of the methicillin-resistant Staphylococcus aureus (MRSA) endemic clone ST612-CC8-t1257-SCCmec_IVd(2B), obtained from the poultry food chain in So...

  • Article
  • Open Access
10 Citations
4,750 Views
14 Pages

Deep Functional Profiling of Wild Animal Microbiomes Reveals Probiotic Bacillus pumilus Strains with a Common Biosynthetic Fingerprint

  • Margarita N. Baranova,
  • Arsen M. Kudzhaev,
  • Yuliana A. Mokrushina,
  • Vladislav V. Babenko,
  • Maria A. Kornienko,
  • Maja V. Malakhova,
  • Victor G. Yudin,
  • Maria P. Rubtsova,
  • Arthur Zalevsky and
  • Olga A. Belozerova
  • + 6 authors

21 January 2022

The biodiversity of microorganisms is maintained by intricate nets of interactions between competing species. Impaired functionality of human microbiomes correlates with their reduced biodiversity originating from aseptic environmental conditions and...

  • Article
  • Open Access
446 Views
26 Pages

Probiotic Potential and Genome-Based Characterization of Lactiplantibacillus plantarum M2, a Promising Isolate Obtained from Spontaneous Fermentation of Humiria balsamifera Pulp

  • Carlos Drielson da Silva Pereira,
  • Roberval Nascimento Moraes Neto,
  • Carlos Eduardo Morais de Sousa,
  • Enio Ciro Dantas de Farias Rocha,
  • Diogo Zeque Bastos,
  • Suana Millen Bruzaca Mota,
  • Romulo Maia Ferreira,
  • Adrielle Zagminan and
  • Luís Cláudio Nascimento da Silva

Background/Objectives: The growing demand for functional foods and alternative therapeutic strategies has intensified the search for novel probiotic strains from underexplored ecosystems. This study aimed to isolate and phenotypically characterize la...