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26 Results Found

  • Article
  • Open Access
3 Citations
2,599 Views
16 Pages

Idiopathic superior oblique muscle palsy is a major type of paralytic, non-comitant strabismus and presents vertical and cyclo-torsional deviation of one eye against the other eye, with a large vertical fusion range and abnormal head posture such as...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
3 Citations
4,267 Views
25 Pages

Genome-Wide DNA Alterations in X-Irradiated Human Gingiva Fibroblasts

  • Neetika Nath,
  • Lisa Hagenau,
  • Stefan Weiss,
  • Ana Tzvetkova and ,
  • Lars R. Jensen,
  • Lars Kaderali,
  • Matthias Port,
  • Harry Scherthan and
  • Andreas W. Kuss
  • + 4 authors+ 0 author

12 August 2020

While ionizing radiation (IR) is a powerful tool in medical diagnostics, nuclear medicine, and radiology, it also is a serious threat to the integrity of genetic material. Mutagenic effects of IR to the human genome have long been the subject of rese...

(This article belongs to the Special Issue Radiation Damage in Biomolecules and Cells)
  • Article
  • Open Access
1 Citations
5,295 Views
17 Pages

Oxford Nanopore Technologies [ONT] Sequencing: Clinical Validation in Genetically Heterogeneous Disorders

  • Mario Urtis,
  • Chiara Paganini,
  • Viviana Vilardo,
  • Antonio Tescari and ,
  • Samantha Minetto,
  • Claudia Cavaliere,
  • Andrea Pilotto,
  • Carmela Giorgianni,
  • Alessia Cattaneo and
  • Eloisa Arbustini
  • + 15 authors+ 10 authors

3 November 2025

Background/Objectives: Short-read-sequencing (SRS) is currently the standard for genetic testing in inherited human diseases. Intrinsic limitations include PCR dependency, restricted read length, and challenges in identifying structural variants (SVs...

(This article belongs to the Section Bioinformatics)
  • Article
  • Open Access
45 Citations
34,415 Views
14 Pages

2 April 2020

High-throughput sequencing technologies have rapidly developed during the past years and have become an essential tool in plant sciences. However, the analysis of genomic data remains challenging and relies mostly on the performance of automatic pipe...

(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
  • Article
  • Open Access
6 Citations
4,230 Views
7 Pages

Prenatal Exome Sequencing Analysis in Fetuses with Various Ultrasound Findings

  • Antoni Borrell,
  • Elena Ordoñez,
  • Montse Pauta,
  • Juan Otaño and ,
  • Fernanda Paz-y-Miño,
  • Mafalda de Almeida,
  • Miriam León and
  • Vincenzo Cirigliano
  • + 3 authors+ 0 author

28 December 2023

Objectives: To evaluate the use of Exome Sequencing (ES) for the detection of genome-wide Copy Number Variants (CNVs) and the frequency of SNVs-InDels in selected genes related to developmental disorders in a cohort of consecutive pregnancies undergo...

(This article belongs to the Special Issue Update on Prenatal Diagnosis and Maternal Fetal Medicine: 2nd Edition)
  • Article
  • Open Access
48 Citations
4,887 Views
18 Pages

Simultaneous Detection of CNVs and SNVs Improves the Diagnostic Yield of Fetuses with Ultrasound Anomalies and Normal Karyotypes

  • Qingwei Qi,
  • Yulin Jiang,
  • Xiya Zhou,
  • Hua Meng and ,
  • Na Hao,
  • Jiazhen Chang,
  • Junjie Bai,
  • Chunli Wang,
  • Mingming Wang and
  • Juntao Liu
  • + 10 authors+ 5 authors

25 November 2020

The routine assessment to determine the genetic etiology for fetal ultrasound anomalies follows a sequential approach, which usually takes about 6–8 weeks turnaround time (TAT). We evaluated the clinical utility of simultaneous detection of cop...

(This article belongs to the Special Issue Advances in Prenatal Genetic Screening and Diagnosis Technologies)
  • Article
  • Open Access
4 Citations
3,583 Views
12 Pages

The Value of a Comprehensive Genomic Evaluation in Prenatal Diagnosis of Genetic Diseases: A Retrospective Study

  • Fang Fu,
  • Ru Li,
  • Qiu-Xia Yu,
  • Xiao Dang and ,
  • Shu-Juan Yan,
  • Hang Zhou,
  • Ken Cheng,
  • Rui-Bin Huang,
  • You Wang and
  • Can Liao
  • + 9 authors+ 4 authors

14 December 2022

Currently, there are still many challenges in prenatal diagnosis, such as limited or uncertain fetal phenotyping, variant interpretation, and rapid turnaround times. The aim of this study was to illustrate the value of a comprehensive genomic evaluat...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
12 Citations
3,329 Views
14 Pages

A Computational Framework for Comprehensive Genomic Profiling in Solid Cancers: The Analytical Performance of a High-Throughput Assay for Small and Copy Number Variants

  • Luciano Giacò,
  • Fernando Palluzzi,
  • Davide Guido,
  • Camilla Nero and ,
  • Flavia Giacomini,
  • Simona Duranti,
  • Emilio Bria,
  • Giampaolo Tortora,
  • Tonia Cenci and
  • Angelo Minucci
  • + 11 authors+ 6 authors

13 December 2022

In January 2022, our institution launched a comprehensive cancer genome profiling program on 10 cancer types using a non-IVD solution named the TruSight Oncology 500 Assay provided by Illumina®. The assay analyzes both DNA and RNA, identifying Si...

(This article belongs to the Section Clinical Research in Cancer)
  • Article
  • Open Access
3,150 Views
14 Pages

Rubinstein–Taybi Syndrome: A Comprehensive Analysis of a Polish Cohort with Most Cases Due to Novel CREBBP and EP300 Variants

  • Agata Cieślikowska,
  • Agnieszka Madej-Pilarczyk,
  • Piotr Iwanowski,
  • Katarzyna Iwanicka-Pronicka and ,
  • Dorota Wicher,
  • Maria Jędrzejowska,
  • Dorota Jurkiewicz,
  • Marzena Gawlik,
  • Dorota Piekutowska-Abramczuk and
  • Elżbieta Ciara
  • + 13 authors+ 8 authors

14 October 2025

Background: Rubinstein–Taybi syndrome (RSTS) is characterized by intellectual disability, short stature, distinctive facial dysmorphism, broad thumbs/halluces, hearing loss, congenital heart or renal defects, and cryptorchidism in males. Pathog...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Review
  • Open Access
15 Citations
5,111 Views
15 Pages

Candidate Genes Encoding Dopamine Receptors as Predictors of the Risk of Antipsychotic-Induced Parkinsonism and Tardive Dyskinesia in Schizophrenic Patients

  • Elena E. Vaiman,
  • Natalia A. Shnayder,
  • Maxim A. Novitsky,
  • Vera S. Dobrodeeva and ,
  • Polina S. Goncharova,
  • Elena N. Bochanova,
  • Margarita R. Sapronova,
  • Tatiana E. Popova,
  • Alexey A. Tappakhov and
  • Regina F. Nasyrova
  • + 5 authors+ 0 author

(1) Introduction: Extrapyramidal disorders form the so-called extrapyramidal syndrome (EPS), which is characterized by the occurrence of motor disorders as a result of damage to the basal ganglia and the subcortical-thalamic connections. Often, this...

(This article belongs to the Special Issue Pharmacokinetics of Biomedicines: Impact on Pre-clinical Development and Clinical Use)
  • Article
  • Open Access
11 Citations
4,408 Views
29 Pages

Chemerin Impact on Alternative mRNA Transcription in the Porcine Luteal Cells

  • Karol G. Makowczenko,
  • Jan P. Jastrzebski,
  • Lukasz Paukszto,
  • Kamil Dobrzyn and ,
  • Marta Kiezun,
  • Nina Smolinska and
  • Tadeusz Kaminski
  • + 2 authors+ 0 author

17 February 2022

Chemerin participates in the regulation of processes related to physiological and disorder mechanisms in mammals, including metabolism, obesity, inflammation, and reproduction. In this study, we have investigated chemerin influence on alternative mRN...

(This article belongs to the Section Reproductive Cells and Development)
  • Article
  • Open Access
15 Citations
5,224 Views
22 Pages

Analysis of the Mutational Landscape of Osteosarcomas Identifies Genes Related to Metastasis and Prognosis and Disrupted Biological Pathways of Immune Response and Bone Development

  • Sara Ferreira Pires,
  • Juliana Sobral de Barros,
  • Silvia Souza da Costa,
  • Gabriel Bandeira do Carmo and ,
  • Marília de Oliveira Scliar,
  • André van Helvoort Lengert,
  • Érica Boldrini,
  • Sandra Regini Morini da Silva,
  • Daniel Onofre Vidal and
  • Ana Cristina Victorino Krepischi
  • + 6 authors+ 1 author

Osteosarcoma (OS) is the most prevalent type of bone tumor, but slow progress has been achieved in disentangling the full set of genomic events involved in its initiation and progression. We assessed by NGS the mutational spectrum of 28 primary OSs f...

(This article belongs to the Special Issue State-of-the-Art Molecular Oncology in Brazil 2.0)
  • Article
  • Open Access
1 Citations
2,512 Views
10 Pages

15 March 2023

This study investigated the association between maximum standardized uptake values (SUVmax) on preoperative 18-FDG PET-CT and next-generation sequencing (NGS) results in post-surgical ovarian malignant tissue in patients with advanced ovarian cancer....

(This article belongs to the Section Obstetrics & Gynecology)
  • Article
  • Open Access
808 Views
17 Pages

Next-Generation Sequencing Refines Diagnosis and Expands Precision Medicine Opportunities in Soft Tissue Sarcomas

  • Francine Tesser-Gamba,
  • Thais Biude Mendes,
  • Fernanda Teresa Lima,
  • Simone de Campos Vieira Abib and ,
  • Eliana Maria Monteiro Caran and
  • Silvia Regina Caminada de Toledo
  • + 1 author+ 0 author

12 August 2026

Soft tissue sarcomas (STSs) are a heterogeneous group of rare mesenchymal malignancies with overlapping morphological and immunohistochemical features, often making definitive diagnosis challenging. Recent advances in next-generation sequencing (NGS)...

(This article belongs to the Special Issue Next-Generation Sequencing in Cancer: Genomics, Diagnostics and Therapeutics)
  • Article
  • Open Access
2,491 Views
15 Pages

Somatic Recombination Between an Ancient and a Recent NOTCH2 Gene Variant Is Associated with the NOTCH2 Gain-of-Function Phenotype in Chronic Lymphocytic Leukemia

  • Rainer Hubmann,
  • Martin Hilgarth,
  • Tamara Löwenstern,
  • Andrea Lienhard and ,
  • Filip Sima,
  • Manuel Reisinger,
  • Claudia Hobel-Kleisch,
  • Edit Porpaczy,
  • Torsten Haferlach and
  • Ulrich Jäger
  • + 11 authors+ 6 authors

22 November 2024

Constitutively active NOTCH2 signaling is a hallmark in chronic lymphocytic leukemia (CLL). The precise underlying defect remains obscure. Here we show that the mRNA sequence coding for the NOTCH2 negative regulatory region (NRR) is consistently dele...

(This article belongs to the Section Molecular Biology)
  • Article
  • Open Access
3 Citations
2,815 Views
12 Pages

Neuregulin 2 Is a Candidate Gene for Autism Spectrum Disorder

  • Wei-Hsien Chien,
  • Chia-Hsiang Chen,
  • Min-Chih Cheng,
  • Yu-Yu Wu and
  • Susan Shur-Fen Gau

Autism spectrum disorder (ASD) is a complex neurodevelopmental disorder with heterogeneous and complex genetic underpinnings. Our previous microarray gene expression profiling identified significantly different neuregulin-2 gene (NRG2) expression bet...

(This article belongs to the Special Issue Genetic Variations in Human Diseases)
  • Article
  • Open Access
3 Citations
2,453 Views
22 Pages

Transcriptomic Characterization of the Porcine Urinary Bladder Trigone Following Intravesical Administration of Resiniferatoxin: Insights from High-Throughput Sequencing

  • Ewa Lepiarczyk,
  • Mateusz Maździarz,
  • Łukasz Paukszto,
  • Agnieszka Bossowska and ,
  • Mariusz Majewski,
  • Jerzy Kaleczyc,
  • Elżbieta Łopieńska-Biernat,
  • Łukasz Jaśkiewicz,
  • Agnieszka Skowrońska and
  • Marta Majewska
  • + 6 authors+ 1 author

9 March 2025

Resiniferatoxin (RTX), a potent capsaicin analog, is being investigated as a therapeutic agent for neurogenic conditions, particularly those affecting bladder control. However, the transcriptomic effects of RTX on the urinary bladder remain largely u...

  • Article
  • Open Access
535 Views
18 Pages

The Pan-Plastome of Walnuts (Juglans regia L.) from Xinjiang Reveals New Insights into Their Genetic Diversity

  • Lulu Zhang,
  • Fangdong Geng,
  • Huijuan Zhou,
  • Baoqing Wang and ,
  • Peng Zhao and
  • Qingguo Ma
  • + 1 author+ 0 author

Persian walnut (Juglans regia L.) is an economically important tree species in the Juglandaceae family. Comparative analysis of its chloroplast genome sequences is of great significance for species identification and evolutionary research. In this st...

(This article belongs to the Section Molecular Plant Sciences)
  • Article
  • Open Access
4 Citations
3,554 Views
12 Pages

Use of Next Generation Sequencing to Define the Origin of Primary Myelofibrosis

  • Giuseppe Visani,
  • Maryam Etebari,
  • Fabio Fuligni,
  • Antonio Di Guardo and ,
  • Alessandro Isidori,
  • Federica Loscocco,
  • Stefania Paolini,
  • Mohsen Navari and
  • Pier Paolo Piccaluga
  • + 4 authors+ 0 author

15 March 2023

Primary myelofibrosis (PMF) is a chronic myeloproliferative neoplasm (MPN) characterized by progressive bone marrow sclerosis, extra-medullary hematopoiesis, and possible transformation to acute leukemia. In the last decade, the molecular pathogenesi...

(This article belongs to the Section Cancer Pathophysiology)
  • Article
  • Open Access
12 Citations
3,580 Views
14 Pages

8 September 2022

The number of patients diagnosed with cancer continues to increasingly rise, and has nearly doubled in 20 years. Therefore, predicting cancer occurrence has a significant impact on reducing medical costs, and preventing cancer early can increase surv...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
522 Views
13 Pages

Functional Analysis of IL-6 Genetic Variants and Their Potential Role in Lipid Homeostasis and Inflammatory Regulation in Colombian Athletes

  • Diana Carolina Zambrano Ríos,
  • Miguel Ángel Gómez,
  • Juan Manuel Gómez,
  • Felipe Alberto Polo and ,
  • Betty Oviedo Sarria,
  • Julián Andrés Rivera and
  • Andrés Jenuer Matta
  • + 2 authors+ 0 author

Obesity and metabolic dysregulation are closely associated with chronic low-grade inflammation, in which interleukin-6 (IL-6) plays a key regulatory role. Genetic variation in the IL-6 gene may influence inflammatory responses and metabolic homeostas...

(This article belongs to the Special Issue Mechanisms and Pathophysiology of Obesity)
  • Article
  • Open Access
4 Citations
3,052 Views
20 Pages

Somatic DNA Variants in Epilepsy Surgery Brain Samples from Patients with Lesional Epilepsy

  • Jana Marie Schwarz,
  • Lena-Luise Becker,
  • Monika Wahle,
  • Jessica Faßbender and ,
  • Ulrich-Wilhelm Thomale,
  • Anna Tietze,
  • Susanne Morales-Gonzalez,
  • Ellen Knierim,
  • Markus Schuelke and
  • Angela M. Kaindl
  • + 5 authors+ 0 author

Epilepsy affects 50 million people worldwide and is drug-resistant in approximately one-third of cases. Even when a structural lesion is identified as the epileptogenic focus, understanding the underlying genetic causes is crucial to guide both couns...

(This article belongs to the Special Issue Epilepsy: From Molecular Basis to Therapy)
  • Article
  • Open Access
894 Views
12 Pages

The Asymmetric Threat of Maternal Cell Contamination in Prenatal Single-Gene Testing

  • Mengmeng Li,
  • Jieping Song,
  • Kui Sun,
  • Jiazhen Chang and ,
  • Kaili Yin,
  • Xueting Yang,
  • Yan Lv,
  • Yulin Jiang and
  • Na Hao
  • + 4 authors+ 0 author

Background/Objectives: Maternal cell contamination (MCC) is a pervasive challenge in prenatal single-gene testing, as it can cause both false-positive and false-negative results. Despite its clinical significance, quantitative tolerance thresholds fo...

(This article belongs to the Special Issue Molecular Pathology in Maternal–Fetal Medicine: Enabling Precision Diagnosis and Prenatal Management)
  • Article
  • Open Access
36 Citations
7,437 Views
12 Pages

Genomic Profiling of KRAS/NRAS/BRAF/PIK3CA Wild-Type Metastatic Colorectal Cancer Patients Reveals Novel Mutations in Genes Potentially Associated with Resistance to Anti-EGFR Agents

  • Anna Maria Rachiglio,
  • Matilde Lambiase,
  • Francesca Fenizia,
  • Cristin Roma and ,
  • Claudia Cardone,
  • Alessia Iannaccone,
  • Antonella De Luca,
  • Marianeve Carotenuto,
  • Daniela Frezzetti and
  • Nicola Normanno
  • + 8 authors+ 3 authors

20 June 2019

Previous findings suggest that metastatic colorectal carcinoma (mCRC) patients with KRAS/NRAS/BRAF/PIK3CA wild-type (quadruple-wt) tumors are highly sensitive to anti-epidermal growth factor receptor (EGFR) monoclonal antibodies (MoAbs). However, add...

  • Article
  • Open Access
6 Citations
3,877 Views
13 Pages

Mitochondrial DNA Variants at Low-Level Heteroplasmy and Decreased Copy Numbers in Chronic Kidney Disease (CKD) Tissues with Kidney Cancer

  • Yuki Kanazashi,
  • Kazuhiro Maejima,
  • Todd A. Johnson,
  • Shota Sasagawa and ,
  • Ryosuke Jikuya,
  • Hisashi Hasumi,
  • Naomichi Matsumoto,
  • Shigekatsu Maekawa,
  • Wataru Obara and
  • Hidewaki Nakagawa
  • + 5 authors+ 0 author

7 December 2023

The human mitochondrial genome (mtDNA) is a circular DNA molecule with a length of 16.6 kb, which contains a total of 37 genes. Somatic mtDNA mutations accumulate with age and environmental exposure, and some types of mtDNA variants may play a role i...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
5 Citations
2,804 Views
12 Pages

The Genomic Landscape of Romanian Non-Small Cell Lung Cancer Patients: The Insights from Routine NGS Testing with the Oncomine™ Dx Express Test at the PATHOS Molecular Pathology Laboratory

  • Orsolya I. Gaal,
  • Andrei Ungureanu,
  • Bogdan Pop,
  • Andreea Tomescu and ,
  • Andreea Cătană,
  • Milena Man,
  • Ruxandra Mioara Râjnoveanu,
  • Emanuel Palade,
  • Marioara Simon and
  • Bogdan Fetica
  • + 16 authors+ 11 authors

11 June 2025

Background: Comprehensive molecular profiling is essential for precision oncology in non-small cell lung cancer (NSCLC). However, genomic data from Eastern European populations, including Romania, remain limited. Methods: We analyzed 398 consecutive...

(This article belongs to the Special Issue Lung Cancer: From Mechanisms of Action and Risk Factors in Disease Onset to Management)