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24 Results Found

  • Article
  • Open Access
17 Citations
4,312 Views
15 Pages

Elucidating the lipidome of Archaea is essential to understand their tolerance to extreme environmental conditions. Previous characterizations of the lipid composition of Pyrococcus species, a model genus of hyperthermophilic archaea belonging to the...

  • Article
  • Open Access
12 Citations
7,398 Views
16 Pages

Distant Non-Obvious Mutations Influence the Activity of a Hyperthermophilic Pyrococcus furiosus Phosphoglucose Isomerase

  • Kalyanasundaram Subramanian,
  • Karolina Mitusińska,
  • John Raedts,
  • Feras Almourfi,
  • Henk-Jan Joosten,
  • Sjon Hendriks,
  • Svetlana E. Sedelnikova,
  • Servé W. M. Kengen,
  • Wilfred R. Hagen and
  • Peter J. Schaap
  • + 4 authors

The cupin-type phosphoglucose isomerase (PfPGI) from the hyperthermophilic archaeon Pyrococcus furiosus catalyzes the reversible isomerization of glucose-6-phosphate to fructose-6-phosphate. We investigated PfPGI using protein-engineering bioinformat...

  • Article
  • Open Access
1,303 Views
17 Pages

Engineering a Thermostable Reverse Transcriptase for RT-PCR Through Rational Design of Pyrococcus furiosus DNA Polymerase

  • Aleksandra A. Kuznetsova,
  • Irina A. Grishina,
  • Elena S. Mikushina and
  • Nikita A. Kuznetsov

24 October 2025

Engineering of a bifunctional enzyme that combines DNA-dependent DNA polymerase and reverse transcriptase (RT) activities is a highly promising biotechnological goal, as it would enable one-enzyme RT-PCR. For this purpose, we selected the high-fideli...

  • Article
  • Open Access
2 Citations
1,265 Views
14 Pages

Using Recombinase-Aid Amplification Combined with Pyrococcus furiosus Argonaute for Rapid Sex Identification in Flamingo (Phoenicopteridae)

  • Shenluan Tan,
  • Fanwen Zeng,
  • Wanhuan Zhong,
  • Tanzipeng Chen,
  • Xuanjiao Chen,
  • Li Li,
  • Hengxi Wei and
  • Shouquan Zhang

24 December 2024

Flamingos (Phoenicopteridae) are among the oldest birds worldwide and are loved by people for their bright red feathers. In addition, flamingos are sexually monomorphic birds, and distinguishing between males and females is difficult. The polymerase...

  • Article
  • Open Access
13 Citations
6,049 Views
16 Pages

Glycerophosphodiester phosphodiesterases (GDPD) are enzymes which degrade various glycerophosphodiesters to produce glycerol-3-phosphate and the corresponding alcohol moiety. Apart from this, a very interesting finding is that this enzyme could be us...

  • Brief Report
  • Open Access
19 Citations
3,739 Views
8 Pages

Novel Nucleic Acid Detection for Human Parvovirus B19 Based on Pyrococcus furiosus Argonaute Protein

  • Weiran Chen,
  • Liyang Qiu,
  • Ting Luo,
  • Zhongqin Lu,
  • Xueying Wang,
  • Qi Hong,
  • Jingwen Luo,
  • Lixin Ma,
  • Yuan Wang and
  • Yanming Dong

21 February 2023

Parvovirus B19 (B19V) is pathogenic to humans and causes various human diseases. However, no antiviral agents or vaccines currently exist for the treatment or prevention of B19V infection. Therefore, developing sensitive and specific methods for B19V...

  • Article
  • Open Access
2 Citations
1,941 Views
12 Pages

Rapid and Sensitive One-Tube Detection of Getah Virus Using RT-LAMP Combined with Pyrococcus furiosus Argonaute

  • Zhong Liu,
  • Fosheng Yang,
  • Mengtao Fang,
  • Qi Wu,
  • Ke Fan,
  • Dongyan Huang,
  • Yu Ye,
  • Gen Wan and
  • Deping Song

24 January 2025

Getah virus (GETV) is a mosquito-borne virus that poses a significant threat to both animal and public health. Traditional diagnostic methods for GETV, such as RT-PCR and RT-qPCR, require expensive equipment and complex procedures, making them unsuit...

  • Article
  • Open Access
2,110 Views
23 Pages

An Insight into the Mechanism of DNA Cleavage by DNA Endonuclease from the Hyperthermophilic Archaeon Pyrococcus furiosus

  • Anastasiia T. Davletgildeeva,
  • Aleksandra A. Kuznetsova,
  • Alexander A. Ishchenko,
  • Murat Saparbaev and
  • Nikita A. Kuznetsov

15 August 2024

Hyperthermophilic archaea such as Pyrococcus furiosus survive under very aggressive environmental conditions by occupying niches inaccessible to representatives of other domains of life. The ability to survive such severe living conditions must be en...

  • Article
  • Open Access
5 Citations
5,414 Views
14 Pages

Dissecting the Repertoire of DNA-Binding Transcription Factors of the Archaeon Pyrococcus furiosus DSM 3638

  • Antonia Denis,
  • Mario Alberto Martínez-Núñez,
  • Silvia Tenorio-Salgado and
  • Ernesto Perez-Rueda

21 September 2018

In recent years, there has been a large increase in the amount of experimental evidence for diverse archaeal organisms, and these findings allow for a comprehensive analysis of archaeal genetic organization. However, studies about regulatory mechanis...

  • Article
  • Open Access
9 Citations
2,613 Views
12 Pages

29 February 2024

Monkeypox virus (MPXV), the pathogen responsible for the infectious disease monkeypox, causes lesions on the skin, lymphadenopathy, and fever. It has posed a global public health threat since May 2022. Highly sensitive and specific detection of MPXV...

  • Review
  • Open Access
3 Citations
2,938 Views
18 Pages

The development of tungsten biochemistry is sketched from the viewpoint of personal participation. Following its identification as a bio-element, a catalogue of genes, enzymes, and reactions was built up. EPR spectroscopic monitoring of redox states...

  • Article
  • Open Access
6 Citations
3,271 Views
14 Pages

13 May 2024

Since SARS-CoV-2 is a highly transmissible virus, alternative reliable, fast, and cost-effective methods are still needed to prevent virus spread that can be applied in the laboratory and for point-of-care testing. Reverse transcription real-time flu...

  • Brief Report
  • Open Access
6 Citations
3,415 Views
9 Pages

PfAgo-Based Zika Virus Detection

  • Yuhao Chen,
  • Xianyi Zhang,
  • Xuan Yang,
  • Lifang Su,
  • Weiran Chen,
  • Jixiang Zhao,
  • Yunhong Hu,
  • Yuan Wang,
  • Ying Wu and
  • Yanming Dong

30 March 2024

As a mosquito-borne flavivirus, Zika virus (ZIKV) has been identified as a global health threat. The virus has been linked to severe congenital disabilities, including microcephaly and other congenital malformations, resulting in fatal intrauterine d...

  • Article
  • Open Access
2 Citations
6,769 Views
9 Pages

Expression, Purification, Crystallization, and X-ray Structural Analysis of CRISPR-Associated Protein Cas6 from Methanocaldococcus jannaschii

  • Ming-Chang Lee,
  • Shih-Ting Tseng,
  • Juan-Cheng Yang,
  • Tung-Ju Hsieh,
  • Shang-Chuen Wu,
  • Shu-Min Kuan,
  • Ming-Jen Chen,
  • Ming-Chiu Chang,
  • Chun-Chiu Wang and
  • Yeh Chen
  • + 4 authors

10 November 2017

The CRISPR-associated protein 6, Cas6 protein, is an endoribonuclease that cleaves precursor CRISPR RNAs within the repeat sequence to release specific invader-targeting RNAs. Cas6 protein can recognize different sequences by their specific scaffold....

  • Article
  • Open Access
48 Citations
9,929 Views
17 Pages

A Macrocyclic Peptide that Serves as a Cocrystallization Ligand and Inhibits the Function of a MATE Family Transporter

  • Christopher J. Hipolito,
  • Yoshiki Tanaka,
  • Takayuki Katoh,
  • Osamu Nureki and
  • Hiroaki Suga

30 August 2013

The random non-standard peptide integrated discovery (RaPID) system has proven to be a powerful approach to discover de novo natural product-like macrocyclic peptides that inhibit protein functions. We have recently reported three macrocyclic peptide...

  • Communication
  • Open Access
19 Citations
3,981 Views
9 Pages

RT-RPA-PfAgo System: A Rapid, Sensitive, and Specific Multiplex Detection Method for Rice-Infecting Viruses

  • Yan Liu,
  • Wenqiang Xia,
  • Wei Zhao,
  • Peiying Hao,
  • Zhengliang Wang,
  • Xiaoping Yu,
  • Xuping Shentu and
  • Kai Sun

20 October 2023

The advancement in CRISPR-Cas biosensors has transmuted the detection of plant viruses owing to their rapid and higher sensitivity. However, false positives and restricted multiplexing capabilities are still the challenges faced by this technology, d...

  • Article
  • Open Access
10 Citations
3,140 Views
15 Pages

Iron oxide nanoparticles have attracted a great deal of research interest in recent years for magnetic hyperthermia therapy owing to their biocompatibility and superior thermal conversion efficiency. Magnetoferritin is a type of biomimetic superparam...

  • Article
  • Open Access
1 Citations
2,059 Views
23 Pages

13 November 2024

Catalase (CAT) plays a crucial role in plant responses to environmental stresses and maintaining redox homeostasis. However, its putative heat lability might compromise its activity and function, thus restricting plant thermotolerance. Herein, we ver...

  • Article
  • Open Access
13 Citations
5,424 Views
15 Pages

Two Archaeal RecJ Nucleases from Methanocaldococcus jannaschii Show Reverse Hydrolysis Polarity: Implication to Their Unique Function in Archaea

  • Gang-Shun Yi,
  • Yang Song,
  • Wei-Wei Wang,
  • Jia-Nan Chen,
  • Wei Deng,
  • Weiguo Cao,
  • Feng-Ping Wang,
  • Xiang Xiao and
  • Xi-Peng Liu

24 August 2017

Bacterial nuclease RecJ, which exists in almost all bacterial species, specifically degrades single-stranded (ss) DNA in the 5′ to 3′ direction. Some archaeal phyla, except Crenarchaea, also encode RecJ homologs. Compared with bacterial RecJ, archaea...

  • Review
  • Open Access
57 Citations
22,411 Views
19 Pages

21 August 2013

Pyruvate decarboxylase (PDC encoded by pdc) is a thiamine pyrophosphate (TPP)-containing enzyme responsible for the conversion of pyruvate to acetaldehyde in many mesophilic organisms. However, no pdc/PDC homolog has yet been found in fully sequenced...

  • Article
  • Open Access
14 Citations
9,165 Views
13 Pages

Hierarchically Ordered Supramolecular Protein-Polymer Composites with Thermoresponsive Properties

  • Salla Välimäki,
  • Joona Mikkilä,
  • Ville Liljeström,
  • Henna Rosilo,
  • Ari Ora and
  • Mauri A. Kostiainen

5 May 2015

Synthetic macromolecules that can bind and co-assemble with proteins are important for the future development of biohybrid materials. Active systems are further required to create materials that can respond and change their behavior in response to ex...

  • Article
  • Open Access
25 Citations
4,390 Views
13 Pages

Serotonin N-acetyltransferase is the penultimate enzyme in the melatonin biosynthetic pathway that catalyzes serotonin into N-acetylserotonin. Many SNAT genes have been cloned and characterized from organisms ranging from bacteria to plants and mamma...

  • Article
  • Open Access
3 Citations
2,965 Views
21 Pages

22 September 2022

The metal binding at protein–protein interfaces is still uncharted territory in intermolecular interactions. To date, only a few protein complexes binding Zn(II) in an intermolecular manner have been deeply investigated. The most notable exampl...