Editor’s Choice Articles

Editor’s Choice articles are based on recommendations by the scientific editors of MDPI journals from around the world. Editors select a small number of articles recently published in the journal that they believe will be particularly interesting to readers, or important in the respective research area. The aim is to provide a snapshot of some of the most exciting work published in the various research areas of the journal.

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14 pages, 2577 KiB  
Article
A Qualitative Exploration of Conflicts in Human-Wildlife Interactions in Namibia’s Kunene Region
by Robert Luetkemeier, Ronja Kraus, Meed Mbidzo, Morgan Hauptfleisch, Stefan Liehr and Niels Blaum
Diversity 2023, 15(3), 440; https://doi.org/10.3390/d15030440 - 16 Mar 2023
Cited by 6 | Viewed by 3750
Abstract
Wildlife numbers are declining globally due to anthropogenic pressures. In Namibia, however, wildlife populations increased with policy instruments that allow private ownership and incentivize their sustainable use. Antithetically, this resulted in increased resource competition between humans and wildlife and triggered conflicts among various [...] Read more.
Wildlife numbers are declining globally due to anthropogenic pressures. In Namibia, however, wildlife populations increased with policy instruments that allow private ownership and incentivize their sustainable use. Antithetically, this resulted in increased resource competition between humans and wildlife and triggered conflicts among various stakeholder groups. This paper summarizes the results of a qualitative exploration of conflicts in wildlife management in Namibia’s Kunene Region, adjacent to Etosha National Park. We conducted a workshop and expert interviews with stakeholders from relevant sectors. Our qualitative research sheds light on societal conflicts over wildlife that originate from diverging interests, livelihood strategies, moral values, knowledge holders, personal relations and views on institutional procedures. We frame our insights into conflicting human–wildlife interactions with theoretical concepts of social-ecological systems, ecosystem services and ecosystem disservices and open the floor for quantitative assessments. Overall, our results may present a suitable way of understanding biodiversity conflicts in a theoretical way. Full article
(This article belongs to the Special Issue Human Wildlife Conflict across Landscapes)
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44 pages, 8716 KiB  
Review
Reviewing Introduction Histories, Pathways, Invasiveness, and Impact of Non-Indigenous Species in Danish Marine Waters
by Kathe R. Jensen, Per Andersen, Nikolaj R. Andersen, Annette Bruhn, Helle Buur, Henrik Carl, Hans Jakobsen, Cornelia Jaspers, Kim Lundgreen, Ruth Nielsen, Beate Strandberg and Peter A. U. Stæhr
Diversity 2023, 15(3), 434; https://doi.org/10.3390/d15030434 - 15 Mar 2023
Cited by 15 | Viewed by 4418
Abstract
Non-indigenous species (NIS) are of concern for biodiversity conservation and ecosystem functioning. We present an updated list of NIS, including cryptogenic species, from Danish marine waters containing 123 species. Benthic invertebrates (36%) and phytoplankton (28%) dominate the list, but fish (15%) and macroalgae [...] Read more.
Non-indigenous species (NIS) are of concern for biodiversity conservation and ecosystem functioning. We present an updated list of NIS, including cryptogenic species, from Danish marine waters containing 123 species. Benthic invertebrates (36%) and phytoplankton (28%) dominate the list, but fish (15%) and macroalgae (13%) are also important. The Limfjord in Northern Jutland emerges as a hotspot for the introduction of NIS. Data from multiple sources were included, i.e., the National Monitoring Program (NOVANA), the National Fish Atlas project, the citizen science project Arter.dk, research articles, and annual national reports of the ICES working group ITMO. Forty-six NIS species were subject to expert judging using a modified Harmonia protocol; 19 were found to fulfil the four selected criteria identifying a species as being ‘invasive’. Additionally, 38 species, not yet recorded in Danish waters, were evaluated using the same method, and 31 were found to fulfil the ‘invasive’ criteria. For nine selected species, introduction history, distribution maps, and time-series diagrams are presented. Our data document that the national monitoring efforts should be expanded to record macrozooplankton, coastal fish, and mobile epibenthic species. Furthermore, the national data repository, Arter.dk, should be expanded to enable more detailed documentation of new NIS records. Full article
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24 pages, 7882 KiB  
Article
Phylogeny of Serpulidae (Annelida, Polychaeta) Inferred from Morphology and DNA Sequences, with a New Classification
by Elena Kupriyanova, Harry A. ten Hove and Greg W. Rouse
Diversity 2023, 15(3), 398; https://doi.org/10.3390/d15030398 - 10 Mar 2023
Cited by 31 | Viewed by 5051
Abstract
Serpulidae Rafinesque, 1815 is a speciose group of polychaetes that all inhabit calcareous tubes. The family was traditionally subdivided into Serpulinae, Filograninae, and Spirorbinae. Recent phylogenetic analyses have suggested that both Filograninae and Serpulinae are paraphyletic, though with limited sampling. Here we report [...] Read more.
Serpulidae Rafinesque, 1815 is a speciose group of polychaetes that all inhabit calcareous tubes. The family was traditionally subdivided into Serpulinae, Filograninae, and Spirorbinae. Recent phylogenetic analyses have suggested that both Filograninae and Serpulinae are paraphyletic, though with limited sampling. Here we report the first phylogenetic analysis of Serpulidae based on comprehensive sampling of genera (though excluding most spirorbin genera). We include a much-needed revision of serpulid taxonomy based on a phylogenetic hypothesis derived from both morphological and molecular data. We analysed 18S, 28S, histone H3 ribosomal nuclear DNA and cytochrome b (cytb) mitochondrial sequences, combined with morphological data. The proposed new classification includes the re-formulated Serpulinae (with tribes Serpulini and Ficopomatini), Spirorbinae, and Filograninae, with apomorphies highlighted for major taxa. Full article
(This article belongs to the Special Issue Diversity in 2022)
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70 pages, 16879 KiB  
Article
A Synoptic Review of the Cartilaginous Fishes (Chondrichthyes: Holocephali, Elasmobranchii) from the Upper Jurassic Konservat-Lagerstätten of Southern Germany: Taxonomy, Diversity, and Faunal Relationships
by Eduardo Villalobos-Segura, Sebastian Stumpf, Julia Türtscher, Patrick L. Jambura, Arnaud Begat, Faviel A. López-Romero, Jan Fischer and Jürgen Kriwet
Diversity 2023, 15(3), 386; https://doi.org/10.3390/d15030386 - 8 Mar 2023
Cited by 16 | Viewed by 8574
Abstract
The Late Jurassic-Early Cretaceous (164–100 Ma) represents one of the main transitional periods in life history. Recent studies unveiled a complex scenario in which abiotic and biotic factors and drivers on regional and global scales due to the fragmentation of Pangaea resulted in [...] Read more.
The Late Jurassic-Early Cretaceous (164–100 Ma) represents one of the main transitional periods in life history. Recent studies unveiled a complex scenario in which abiotic and biotic factors and drivers on regional and global scales due to the fragmentation of Pangaea resulted in dramatic faunal and ecological turnovers in terrestrial and marine environments. However, chondrichthyan faunas from this interval have received surprisingly little recognition. The presence of numerous entire skeletons of chondrichthyans preserved in several localities in southern Germany, often referred to as Konservat-Lagerstätten (e.g., Nusplingen and the Solnhofen Archipelago), provides a unique opportunity of to study the taxonomic composition of these assemblages, their ecological distributions and adaptations, and evolutionary histories in detail. However, even after 160 years of study, the current knowledge of southern Germany’s Late Jurassic chondrichthyan diversity remains incomplete. Over the last 20 years, the systematic study and bulk sampling of southern Germany’s Late Jurassic deposits significantly increased the number of known fossil chondrichthyan genera from the region (32 in the present study). In the present work, the fossil record, and the taxonomic composition of Late Jurassic chondrichthyans from southern Germany are reviewed and compared with several contemporaneous assemblages from other sites in Europe. Our results suggest, inter alia, that the Late Jurassic chondrichthyans displayed extended distributions within Europe. However, it nevertheless also is evident that the taxonomy of Late Jurassic chondrichthyans is in urgent need of revision. Full article
(This article belongs to the Special Issue Diversity in 2023)
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21 pages, 2438 KiB  
Article
Conservation Genetics of Lake Sturgeon (Acipenser fulvescens): Nuclear Phylogeography Drives Contemporary Patterns of Genetic Structure and Diversity
by Shawna L. Kjartanson, Tim Haxton, Kristyne Wozney, Nathan R. Lovejoy and Chris C. Wilson
Diversity 2023, 15(3), 385; https://doi.org/10.3390/d15030385 - 7 Mar 2023
Cited by 8 | Viewed by 3255
Abstract
Sustainable management of exploited and endangered species is facilitated by knowledge of their geographic genetic structure. Lake sturgeon (Acipenser fulvescens) epitomizes both categories, but genetic information has largely been limited to the Laurentian Great Lakes basin. We assessed the hierarchical geographic [...] Read more.
Sustainable management of exploited and endangered species is facilitated by knowledge of their geographic genetic structure. Lake sturgeon (Acipenser fulvescens) epitomizes both categories, but genetic information has largely been limited to the Laurentian Great Lakes basin. We assessed the hierarchical geographic genetic structure of lake sturgeon across their Canadian range using a variation at 14 microsatellite loci. Observed patterns showed evidence of two ancestral groups which originated from Mississippian and Missourian glacial refugia. Coalescent analysis indicates the two lineages most recently shared common ancestry during the late Pleistocene and were likely isolated by the late Wisconsinan ice advance, with subsequent interpopulation divergences within each lineage reflecting their reciprocal isolation as glacial meltwaters receded. Hierarchical patterns of genetic relationships among contemporary populations largely reflect colonization histories and connections within primary and secondary watersheds. Populations in western Canada showed strong similarities based on their shared Missourian origins and colonization from glacial Lake Agassiz. By contrast, populations in the Great Lakes–St. Lawrence River drainage were largely founded from a Mississippian source. Sturgeon populations in northern parts of Ontario and Quebec showed evidence of mixed ancestry from secondary contact between the two refugial groups through Holocene meltwater lakes. Within major watersheds, the strong similarity among geographically separate populations reflects their shared ancestry during postglacial colonization. The general lack of structure within major river systems highlights historically continuous habitat (connectivity) and gene flow rather than contemporary barriers (dams). These data highlight the importance of Quaternary and prehistoric events on patterns of genetic diversity and divergence within and among contemporary populations, as well as the importance of these populations for conserving the species’ evolutionary legacy. Full article
(This article belongs to the Special Issue Conservation Genetics of Sturgeons)
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14 pages, 8043 KiB  
Article
Neuroanatomical Study and Three-Dimensional Cranial Reconstruction of the Brazilian Albian Pleurodiran Turtle Euraxemys essweini
by Marcos Martín-Jiménez and Adán Pérez-García
Diversity 2023, 15(3), 374; https://doi.org/10.3390/d15030374 - 5 Mar 2023
Cited by 7 | Viewed by 2984
Abstract
Pleurodira represent one of the two clades that compose the crown Testudines, and their temporal range is Late Jurassic–present. However, knowledge about the neuroanatomy of extinct pleurodires is still very limited. In this context, scarce neuroanatomical information about the Cretaceous clade Euraxemydidae is [...] Read more.
Pleurodira represent one of the two clades that compose the crown Testudines, and their temporal range is Late Jurassic–present. However, knowledge about the neuroanatomy of extinct pleurodires is still very limited. In this context, scarce neuroanatomical information about the Cretaceous clade Euraxemydidae is currently available, limited to some characters of the Moroccan Cenomanian Dirqadim schaefferi. In the present work, we perform the detailed neuroanatomical study of its sister taxon, the Brazilian Albian Euraxemys essweini, based on the analysis of the skull of its holotype and only known individual of the species. The detailed virtual three-dimensional reconstruction of all its cranial bones is performed, also improving the information about its osseous anatomy. The different neuroanatomical cavities (i.e., cranial, nasal, and labyrinthic ones) and canals (i.e., nervous and circulatory ones) are compared with those identified thus far for other extinct and extant members of the Pleurodira in order to characterize the neuroanatomy of the extinct clade Euraxemydidae in detail. Full article
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18 pages, 8807 KiB  
Article
Invading the Greek Seas: Spatiotemporal Patterns of Marine Impactful Alien and Cryptogenic Species
by Michail Ragkousis, Maria Sini, Nikoletta Koukourouvli, Argyro Zenetos and Stelios Katsanevakis
Diversity 2023, 15(3), 353; https://doi.org/10.3390/d15030353 - 1 Mar 2023
Cited by 10 | Viewed by 4129
Abstract
The Greek Seas are greatly exposed to the proliferation of marine alien species. At least 242 alien species have been reported within Greek territorial waters, three-quarters of which are considered established, while their rate of introduction is increasing. Some of these species exhibit [...] Read more.
The Greek Seas are greatly exposed to the proliferation of marine alien species. At least 242 alien species have been reported within Greek territorial waters, three-quarters of which are considered established, while their rate of introduction is increasing. Some of these species exhibit high invasiveness, imposing severe impacts on native ecosystems and ecosystem services. The spatiotemporal proliferation of these species outside their natural boundaries depends on several parameters, including their biological characteristics, native distribution range, introduction pathway, and time of initial introduction. Knowing the current and potential alien species distribution is essential for the implementation of effective management actions. To investigate the distribution of impactful cryptogenic and alien species (ICAS) in the Greek Seas, we combined all records available until the end of 2020 from eight types of data sources: (1) scientific literature, (2) grey literature, (3) offline databases, (4) online scientific databases, (5) personal observations of independent researchers, (6) communications with divers and diving centers, (7) in situ underwater sampling, and (8) social networks. The results of 5478 georeferenced records refer to 60 marine ICAS belonging to 16 taxonomic groups. The number of records and the overall number of ICAS present an increasing trend from the northern to the southern parts of our study area, and there is a clear distinction in community composition between the northern and southern subregions. This latitudinal gradient is mainly due to the large number of thermophilous Lessepsian species of West Indo-Pacific origin, which reach the southern parts of the study area through unaided dispersal. On the other hand, transport stowaways appear to be more prevalent in areas located near large ports, which show significant differences in ICAS numbers and community composition compared to sites located far from ports. Most records (>40% of the total) were associated with rocky reefs, partly reflecting the preference of divers for this habitat type but also the presence of conspicuous, reef-associated impactful fish. The number of published records, as well as the number of reported ICAS, shows a dramatic increase with time, highlighting the urgent need for immediate proactive management actions and scientifically informed control measures. Full article
(This article belongs to the Special Issue Recent Studies of Invasion Ecology in the Mediterranean Basin)
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21 pages, 1711 KiB  
Article
The Reptile Relocation Industry in Australia: Perspectives from Operators
by Chantelle M. Derez and Richard A. Fuller
Diversity 2023, 15(3), 343; https://doi.org/10.3390/d15030343 - 28 Feb 2023
Cited by 1 | Viewed by 6542
Abstract
Thousands of reptiles are relocated annually in Australia, yet there has been relatively little research aimed at understanding how the reptile relocation industry operates. An online questionnaire was distributed to anyone who had relocated a reptile between April 2019 and April 2020, including [...] Read more.
Thousands of reptiles are relocated annually in Australia, yet there has been relatively little research aimed at understanding how the reptile relocation industry operates. An online questionnaire was distributed to anyone who had relocated a reptile between April 2019 and April 2020, including wildlife relocators, wildlife rehabilitators and the general public. The questionnaire explored demographics, decision-making and concerns about how the industry functions, through 24 questions and two opportunities to provide open-ended comments. We received 125 responses and 123 comments from operators in all Australian states and territories. Beliefs about appropriate times and places for reptile releases were not reflected in practice for the majority of operators. Confidence about reptiles remaining at recipient sites was low regardless of how many years’ experience an operator had. Escaped captive native reptiles were encountered by most operators, and a quarter of operators were called out to exotic non-native snakes. Operators across all levels of experience indicated a need for changes within the industry, including increased training and professionalism, and more scientific studies on the outcomes of relocations to address concerns about the impacts that the industry has on the wildlife that it is trying to protect. Full article
(This article belongs to the Special Issue Wildlife Welfare)
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43 pages, 9735 KiB  
Article
Systematics and Phylogenetic Interrelationships of the Enigmatic Late Jurassic Shark Protospinax annectans Woodward, 1918 with Comments on the Shark–Ray Sister Group Relationship
by Patrick L. Jambura, Eduardo Villalobos-Segura, Julia Türtscher, Arnaud Begat, Manuel Andreas Staggl, Sebastian Stumpf, René Kindlimann, Stefanie Klug, Frederic Lacombat, Burkhard Pohl, John G. Maisey, Gavin J. P. Naylor and Jürgen Kriwet
Diversity 2023, 15(3), 311; https://doi.org/10.3390/d15030311 - 21 Feb 2023
Cited by 10 | Viewed by 10129
Abstract
The Late Jurassic elasmobranch Protospinax annectans is often regarded as a key species to our understanding of crown group elasmobranch interrelationships and the evolutionary history of this group. However, since its first description more than 100 years ago, its phylogenetic position within the [...] Read more.
The Late Jurassic elasmobranch Protospinax annectans is often regarded as a key species to our understanding of crown group elasmobranch interrelationships and the evolutionary history of this group. However, since its first description more than 100 years ago, its phylogenetic position within the Elasmobranchii (sharks and rays) has proven controversial, and a closer relationship between Protospinax and each of the posited superorders (Batomorphii, Squalomorphii, and Galeomorphii) has been proposed over the time. Here we revise this controversial taxon based on new holomorphic specimens from the Late Jurassic Konservat-Lagerstätte of the Solnhofen Archipelago in Bavaria (Germany) and review its skeletal morphology, systematics, and phylogenetic interrelationships. A data matrix with 224 morphological characters was compiled and analyzed under a molecular backbone constraint. Our results indicate a close relationship between Protospinax, angel sharks (Squatiniformes), and saw sharks (Pristiophoriformes). However, the revision of our morphological data matrix within a molecular framework highlights the lack of morphological characters defining certain groups, especially sharks of the order Squaliformes, hampering the phylogenetic resolution of Protospinax annectans with certainty. Furthermore, the monophyly of modern sharks retrieved by molecular studies is only weakly supported by morphological data, stressing the need for more characters to align morphological and molecular studies in the future. Full article
(This article belongs to the Special Issue Evolution and Diversity of Fishes in Deep Time)
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20 pages, 25644 KiB  
Article
The Exceptional Presence of Megaloceros giganteus in North-Eastern Iberia and Its Palaeoecological Implications: The Case of Teixoneres Cave (Moià, Barcelona, Spain)
by Antigone Uzunidis, Florent Rivals, Anna Rufà, Ruth Blasco and Jordi Rosell
Diversity 2023, 15(2), 299; https://doi.org/10.3390/d15020299 - 17 Feb 2023
Cited by 3 | Viewed by 5012
Abstract
In this article we announce the discovery of the first remains of Megaloceros giganteus found in Catalonia (north-eastern Iberia) from the Late Pleistocene: a fragment of maxillary. Dated between 35,000 and 37,000 cal BP, it is also among the youngest occurrence of this [...] Read more.
In this article we announce the discovery of the first remains of Megaloceros giganteus found in Catalonia (north-eastern Iberia) from the Late Pleistocene: a fragment of maxillary. Dated between 35,000 and 37,000 cal BP, it is also among the youngest occurrence of this taxon in the Iberian Peninsula, while its last known occurrence is dated to the Neolithic period. Through a comparison with the giant deer of the northern Pyrenees, we analyzed the herbivore guilds in which this taxon was associated to understand the context in which it was able to enter the Iberian Peninsula. By comparing its diet with those of specimens from Northern Europe, we detail the ecological adaptations of this taxon in this new environment. We suggest that Megaloceros accompanied the migrations of cold-adapted species by taking advantage of the opening of corridors on both sides of the Pyrenees during the coldest periods of the Late Pleistocene. The diet of the Iberian individuals, which is oriented towards abrasive plants, suggests an adaptation to a different ecological niche than that found in Northern European individuals. The northern Iberian Peninsula may have been an extreme in the geographical expansion of M. giganteus. More specimens will be needed in the future to establish the variability of the southern Megaloceros populations. Full article
(This article belongs to the Special Issue Ecology and Evolution of Mammals)
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17 pages, 1091 KiB  
Article
Threat Analysis of Forest Fragmentation and Degradation for Peruvian Primates
by Sam Shanee, Lorena Fernández-Hidalgo, Nestor Allgas, Veronica Vero, Raul Bello-Santa Cruz, Mark Bowler, Mrinalini Erkenswick Watsa, Gabriel García Mendoza, Alvaro García-Olaechea, Cindy Hurtado, Zoila Vega, Laura Marsh, Ramesh Boonratana and A. Patricia Mendoza
Diversity 2023, 15(2), 276; https://doi.org/10.3390/d15020276 - 15 Feb 2023
Cited by 11 | Viewed by 5244
Abstract
Peru has 55 primate taxa (including all species and subspecies), a third of which are threatened. The major drivers of habitat loss, degradation and fragmentation are grazing, forestry, agriculture and transport infrastructure. Other activities such as hunting exacerbate these threats. We assessed the [...] Read more.
Peru has 55 primate taxa (including all species and subspecies), a third of which are threatened. The major drivers of habitat loss, degradation and fragmentation are grazing, forestry, agriculture and transport infrastructure. Other activities such as hunting exacerbate these threats. We assessed the threats from degradation and fragmentation facing Peruvian primates to aid in the design and implementation of mitigation strategies. Through GIS-based mapping, statistical modeling and specialist assessments, we evaluated all primate taxa using the IUCN Conservation Measures Partnership Unified Classifications of Direct Threats across five categories (direct threats to primates, threats to habitat, causes of fragmentation, factors exacerbating fragmentation and threats to primates and habitats as a consequence of fragmentation), highlighting which were most common and most severe. Our results showed that all primate taxa were affected by degradation and fragmentation in Peru. The most common and severe direct threat was hunting, whereas housing and urban development, smallholder crop farming, smallholder grazing and large-scale logging were the most common and severe threats across the other categories. The families Cebidae and Atelidae face the highest overall threat. Our analysis showed that the current IUCN listing of Leontocebus leucogenys [LC] underestimates the true threat level this species faces and that Lagothrix lagothricha tschudii [DD] should be listed under one of the threat categories. In Peru, the need for mitigating the threat of habitat fragmentation is clear. To ensure the survival of Peru’s diverse primate taxa, forest connectivity needs to be maintained or recovered through the protection and restoration of key areas considering their biological and social needs. Full article
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10 pages, 2168 KiB  
Article
The Missing Late Pleistocene Ostrich Femur from Zhoukoudian (China): New Information Provided by a Rediscovered Old Cast
by Eric Buffetaut
Diversity 2023, 15(2), 265; https://doi.org/10.3390/d15020265 - 13 Feb 2023
Cited by 1 | Viewed by 4007
Abstract
A complete ostrich femur from the Late Pleistocene deposits of the Upper Cave at Zhoukoudian (China) was referred by Shaw to Struthio anderssoni in the 1930s, but its present whereabouts are unknown. A good quality plaster cast of the missing specimen has been [...] Read more.
A complete ostrich femur from the Late Pleistocene deposits of the Upper Cave at Zhoukoudian (China) was referred by Shaw to Struthio anderssoni in the 1930s, but its present whereabouts are unknown. A good quality plaster cast of the missing specimen has been found in the collections of the Natural History Museum (London). This cast provides interesting information about the morphology of this large ostrich femur, which had previously been only summarily described and not illustrated. Although smaller than the femora of the Early Pleistocene giant ostrich Pachystruthio, the robust femur from Zhoukoudian shows morphological similarities with them, and it is suggested that ‘Struthioanderssoni should be placed in the genus Pachystruthio. The importance of old palaeontological casts is emphasized, as well as the need to preserve and curate them properly. Full article
(This article belongs to the Special Issue Do We Still Need Natural History Collections?)
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17 pages, 1225 KiB  
Review
Addressing Threats and Ecosystem Intactness to Enable Action for Extinct in the Wild Species
by Sarah E. Dalrymple, Thomas Abeli, John G. Ewen, Tania C. Gilbert, Carolyn J. Hogg, Natasha A. Lloyd, Axel Moehrenschlager, Jon Paul Rodríguez and Donal Smith
Diversity 2023, 15(2), 268; https://doi.org/10.3390/d15020268 - 13 Feb 2023
Cited by 2 | Viewed by 5476
Abstract
The species listed as Extinct in the Wild (EW) in the IUCN Red List of Threatened Species consist of 84 plants and animals that have been lost from their indigenous range. EW species are therefore restricted to ex situ conservation facilities and often [...] Read more.
The species listed as Extinct in the Wild (EW) in the IUCN Red List of Threatened Species consist of 84 plants and animals that have been lost from their indigenous range. EW species are therefore restricted to ex situ conservation facilities and often have populations founded with few individuals. Our analysis demonstrates that 60% of EW species are associated with ecoregions that have very low proportions of intact habitat. Furthermore, threats such as invasive species, pollution, and climate change affect just over half of EW species and compound the obstacles facing their reinstatement to the wild. Despite these bleak assessments, there are various options for EW recovery. We present five scenarios that encapsulate the circumstances facing EW species and suggest potential conservation action for each of these situations. We illustrate these scenarios using case studies of EW species that demonstrate how the various options of ex situ management, reintroduction, and assisted colonisation to new habitat can be used to address the very exacting requirements of EW species. Our aim is to present a broad review of the obstacles facing the recovery of EW species whilst inspiring action to prevent the extinction of the most imperilled species on the planet. Full article
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17 pages, 1627 KiB  
Article
How Epiphytic Are Filmy Ferns? A Semi-Quantitative Approach
by Gerhard Zotz and Helena J. R. Einzmann
Diversity 2023, 15(2), 270; https://doi.org/10.3390/d15020270 - 13 Feb 2023
Cited by 6 | Viewed by 4422
Abstract
Similar to plants in many other families, members of the Hymenophyllaceae use numerous substrates for growth, e.g., soil, rocks or tree bark. However, substrate preference does not only differ among species but can also vary among members of the same species. There have [...] Read more.
Similar to plants in many other families, members of the Hymenophyllaceae use numerous substrates for growth, e.g., soil, rocks or tree bark. However, substrate preference does not only differ among species but can also vary among members of the same species. There have been several attempts in the past to appropriately capture this variation, but none proved feasible or was replicated in any subsequent work. In our approach, we use textual information from numerous sources like checklists, floras and species descriptions to come up with a quantitative index of the preference of 450 species of filmy ferns (=c. 75% of all species of the family) for epiphytic, lithophytic or terrestrial growth. We show that the majority of species have clear habitat preferences, while strict habitat specificity is rather uncommon. Our compilation will be an important input for future ecological and phylogenetic studies in this family, but the presented approach is of much more general interest: it is immediately applicable to other taxonomic groups and should eventually allow us to replace the current approach of assigning species to distinct categories (epiphyte, lithophyte or terrestrial) by one that finally reflects biological variability more appropriately. Full article
(This article belongs to the Special Issue Diversity in 2022)
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53 pages, 13639 KiB  
Article
Basal Anseriformes from the Early Paleogene of North America and Europe
by Peter Houde, Meig Dickson and Dakota Camarena
Diversity 2023, 15(2), 233; https://doi.org/10.3390/d15020233 - 7 Feb 2023
Cited by 12 | Viewed by 9044
Abstract
We describe nearly complete skeletons of basal Anseriformes from the Latest Paleocene to the early Eocene of North America and Europe. Collectively, these birds appear to be representative of anseriforms near the divergence of Anhimae and Anseres, but their exact positions relative to [...] Read more.
We describe nearly complete skeletons of basal Anseriformes from the Latest Paleocene to the early Eocene of North America and Europe. Collectively, these birds appear to be representative of anseriforms near the divergence of Anhimae and Anseres, but their exact positions relative to these clades remains uncertain. A new family, Anachronornithidae nov. fam., is erected on the basis of one of these, Anachronornis anhimops nov. gen., nov. gen. et sp., to which the others cannot be confidently assigned. The new fossils augment a growing collection of early Pan-Anseriformes, which in their diversity do not paint an unambiguous picture of phylogeny or character state evolution on the path to or within crown-Anseriformes. Anachronornis nov. gen. is similar in some aspects of both cranial and postcranial anatomy to other well-represented early Paleogene Anseriformes and members of Anseres, such as Presbyornis Wetmore, 1926. However, it exhibits a more landfowl-like bill, like that of Anhimae and unlike the spatulate bill of Anseres. Additional specimens of similar basal Anseriformes of uncertain affinities from the early Eocene of North America and Europe further complicate interpretation of character state polarity due to the mosaicism of primitive and derived characters they exhibit. Full article
(This article belongs to the Special Issue Diversity in 2022)
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47 pages, 11309 KiB  
Article
Cranial Material of Long-Snouted Dolphins (Cetacea, Odontoceti, Eurhinodelphinidae) from the Early Miocene of Rosignano Monferrato, Piedmont (NW Italy): Anatomy, Paleoneurology, Phylogenetic Relationships and Paleobiogeography
by Vera Tosetto, Piero Damarco, Riccardo Daniello, Marco Pavia, Giorgio Carnevale and Michelangelo Bisconti
Diversity 2023, 15(2), 227; https://doi.org/10.3390/d15020227 - 5 Feb 2023
Cited by 2 | Viewed by 4679
Abstract
We provide a new study of previously published eurhinodelphinid materials from the early Miocene of Piedmont (NW Italy) based on a new preparation of the fossil specimens. We studied specimens previously assigned to Tursiops miocaenus and Dalpiazella sp. and provide new anatomical data [...] Read more.
We provide a new study of previously published eurhinodelphinid materials from the early Miocene of Piedmont (NW Italy) based on a new preparation of the fossil specimens. We studied specimens previously assigned to Tursiops miocaenus and Dalpiazella sp. and provide new anatomical data on the eurhinodelphinid skull and ear bones. In particular, we suggest that a skull that was previously assigned to Tursiops miocaenus must be reassigned to Ziphiodelphis sigmoideus (Cetacea, Odontoceti, Eurhinodelphinidae) based on new comparisons of the squamosal. This finding enabled us to provide new anatomical information on the ear bone anatomy of Z. sigmoideus that was previously unknown. The material originally assigned to Tursiops miocaenus is currently lost. For this reason and due to the fact that the partial illustration of this species by Portis does not allow us to find diagnostic characters for this species, we decided that Tursiops miocaenus is a nomen dubium. Analysis of additional isolated teeth previously assigned to Tursiops miocaenus led to the conclusion that these specimens represent Odontoceti incertae sedis. We performed a new phylogenetic analysis by adding newly discovered character states to a previous dataset and a paleobiogeographic analysis of Eurhinodelphinidae. We found two monophyletic clades within this family. The paleobiogeographic pattern found by the present work suggests the existence of North Atlantic and Mediterranean clades with some species distributed among both basins. We analyzed the virtual endocast of Ziphiodelphis sigmoideus and found that it resembles that of Schizodelphis in several respects, suggesting that some of the more derived characters of the odontocete brain were still absent in these early Miocene eurhinodelphinids. Full article
(This article belongs to the Special Issue Evolution of Crown Cetacea)
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29 pages, 4137 KiB  
Article
Photographic Checklist, DNA Barcoding, and New Species of Sea Slugs and Snails from the Faafu Atoll, Maldives (Gastropoda: Heterobranchia and Vetigastropoda)
by Tauana J. Cunha, Jose Fernández-Simón, Macy Petrula, Gonzalo Giribet and Juan Moles
Diversity 2023, 15(2), 219; https://doi.org/10.3390/d15020219 - 3 Feb 2023
Cited by 12 | Viewed by 7582
Abstract
Baseline biodiversity data are key for ecological and evolutionary studies and are especially relevant for areas such as the Maldivian Archipelago in the Indian Ocean, which can act as a stepping-stone for the transport of widely distributed marine species. We surveyed the islands [...] Read more.
Baseline biodiversity data are key for ecological and evolutionary studies and are especially relevant for areas such as the Maldivian Archipelago in the Indian Ocean, which can act as a stepping-stone for the transport of widely distributed marine species. We surveyed the islands and reefs of the Faafu and Malé Atolls with snorkeling and scuba diving, collecting the two gastropod subclasses, Heterobranchia and Vetigastropoda. Our inventory comprises 104 species photographed alive to create an identification guide. We also provide COI barcodes for most species, adding novel sequence data for the Maldivian malacofauna. Half of our species represent new records for the Maldives, emphasizing how much diversity remains to be discovered. Species distributions reflect ecological rarity, with almost 60% of taxa only found in one site. We also compiled a comprehensive checklist of heterobranchs and vetigastropods of the Maldives based on literature records, resulting in 320 species, which, together with barcoding data, indicate several potential cryptic species in the Indo-Pacific. Six new species are described, the nudibranchs Limenandra evanescenti n. sp., Eubranchus putnami n. sp., Sakuraeolis marhe n. sp., Moridilla maldivensis n. sp., Tergiposacca perspicua n. sp., and the sacoglossan Costasiella fridae n. sp. Full article
(This article belongs to the Special Issue Zoological Checklists: From Natural History Museums to Ecosystems)
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18 pages, 3877 KiB  
Article
Spatiotemporal Patterns of Wolves, and Sympatric Predators and Prey Relative to Human Disturbance in Northwestern Greece
by Maria Petridou, John F. Benson, Olivier Gimenez and Vassiliki Kati
Diversity 2023, 15(2), 184; https://doi.org/10.3390/d15020184 - 28 Jan 2023
Cited by 20 | Viewed by 4911
Abstract
In an era of increasing human pressure on nature, understanding the spatiotemporal patterns of wildlife relative to human disturbance can inform conservation efforts, especially for large carnivores. We examined the temporal activity and spatial patterns of wolves and eight sympatric mammals at 71 [...] Read more.
In an era of increasing human pressure on nature, understanding the spatiotemporal patterns of wildlife relative to human disturbance can inform conservation efforts, especially for large carnivores. We examined the temporal activity and spatial patterns of wolves and eight sympatric mammals at 71 camera trap stations in Greece. Grey wolves temporally overlapped the most with wild boars (Δ = 0.84) and medium-sized mammals (Δ > 0.75), moderately with brown bears (Δ = 0.70), and least with roe deer (Δ = 0.46). All wild mammals were mainly nocturnal and exhibited low temporal overlap with human disturbance (humans, vehicles, livestock, and dogs; Δ = 0.18–0.36), apart from roe deer, which were more diurnal (Δ = 0.80). Six out of nine species increased their nocturnality at sites of high human disturbance, particularly roe deer and wolves. The detection of wolves was negatively associated with paved roads, the detection of roe deer was negatively associated with human disturbance, and the detection of wild boars was negatively associated with dogs. The detection of bears, boars, and foxes increased closer to settlements. Our study has applied implications for wolf conservation and human–wildlife coexistence. Full article
(This article belongs to the Section Animal Diversity)
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16 pages, 1894 KiB  
Article
Compilation, Revision, and Annotation of DNA Barcodes of Marine Invertebrate Non-Indigenous Species (NIS) Occurring in European Coastal Regions
by Ana S. Lavrador, João T. Fontes, Pedro E. Vieira, Filipe O. Costa and Sofia Duarte
Diversity 2023, 15(2), 174; https://doi.org/10.3390/d15020174 - 26 Jan 2023
Cited by 16 | Viewed by 3621
Abstract
The introduction of non-indigenous species (NIS) is one of the major threats to the integrity of European coastal ecosystems. DNA-based assessments have been increasingly adopted for monitoring NIS. However, the accuracy of DNA-based taxonomic assignments is largely dependent on the completion and reliability [...] Read more.
The introduction of non-indigenous species (NIS) is one of the major threats to the integrity of European coastal ecosystems. DNA-based assessments have been increasingly adopted for monitoring NIS. However, the accuracy of DNA-based taxonomic assignments is largely dependent on the completion and reliability of DNA barcode reference libraries. As such, we aimed to compile and audit a DNA barcode reference library for marine invertebrate NIS occurring in Europe. To do so, we compiled a list of NIS using three databases: the European Alien Species Information Network (EASIN), the Information System on Aquatic Non-indigenous and Cryptogenic Species (AquaNIS), and the World Register of Introduced Marine Species (WRiMS). For each species, we retrieved the available cytochrome c oxidase subunit I (COI) mitochondrial gene sequences from the Barcode of Life Data System (BOLD) and used the Barcode, Audit & Grade System (BAGS) to check congruence between morphospecies names and Barcode Index Numbers (BINs). From the 1249 species compiled, approximately 42% had records on BOLD, among which 56% were discordant. We further analyzed these cases to determine the causes of the discordances and attributed additional annotation tags. Of the 622 discordant BINs, after revision, 35% were successfully solved, which increased the number of NIS detected in metabarcoding datasets from 12 to 16. However, a fair number of BINs remained discordant. Reliability of reference barcode records is particularly critical in the case of NIS, where erroneous identification may trigger action or inaction when not required. Full article
(This article belongs to the Collection Marine Invasive Species)
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17 pages, 1857 KiB  
Article
The Role of Cymodocea nodosa and Caulerpa prolifera Meadows as Nitrogen Sinks in Temperate Coastal Lagoons
by Jaime Bernardeau-Esteller, José Miguel Sandoval-Gil, María Dolores Belando, Aranzazu Ramos-Segura, Rocío García-Muñoz, Lazaro Marín-Guirao and Juan Manuel Ruiz
Diversity 2023, 15(2), 172; https://doi.org/10.3390/d15020172 - 26 Jan 2023
Cited by 11 | Viewed by 2885
Abstract
In coastal lagoons, marine benthic macrophyte meadows can be an important element in the resistance to eutrophication of the ecosystem, as they can function as temporary nitrogen sinks, limiting the availability of this nutrient for opportunistic organisms. The role of nitrogen sinks for [...] Read more.
In coastal lagoons, marine benthic macrophyte meadows can be an important element in the resistance to eutrophication of the ecosystem, as they can function as temporary nitrogen sinks, limiting the availability of this nutrient for opportunistic organisms. The role of nitrogen sinks for two dominant macrophyte species of Mediterranean coastal lagoons, the seagrass Cymodocea nodosa and the seaweed Caulerpa prolifera, was analysed by two different approaches: (i) studying nitrate (NO3-) and ammonium (NH4+) uptake kinetics of aboveground tissues in a laboratory and (ii) estimating nitrogen stocks and demands of meadows under natural conditions. The studies were carried out in the coastal lagoon of the Mar Menor, which has been subjected to high anthropogenic nitrogen inputs for decades. While both macrophytes were efficient in exploiting NH4+ from the water column, only C. prolifera showed a high NO3- uptake capacity. Large N pools in the C. nodosa and C. prolifera meadows of the Mar Menor were detected, suggesting that these habitats may have the potential to be essential reservoirs for this nutrient. However, the major role of belowground tissues of the seagrasses in nitrogen accumulation may determine important differences between the two species in temporary N storage and sequestration. The data on N demands for the meadows of both macrophytes in the Mar Menor suggest an important contribution of these habitats in controlling the inputs of this nutrient into the lagoon. We conclude that C. nodosa and C. prolifera meadows can play a key role as a sink for dissolved inorganic nitrogen in temperate coastal lagoons, being an important mechanism of resistance to eutrophication. Full article
(This article belongs to the Special Issue Marine Nitrogen Cycling and Food Webs)
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11 pages, 4990 KiB  
Article
New Data on the Poorly Known Jurassic Record of the Turtle Hylaeochelys (Thalassochelydia), Based on New Finds from Portugal
by Adán Pérez-García, Bruno Camilo and Francisco Ortega
Diversity 2023, 15(2), 167; https://doi.org/10.3390/d15020167 - 25 Jan 2023
Cited by 3 | Viewed by 3400
Abstract
Hylaeochelys is the only thalassochelydian turtle identified in the Cretaceous record. A single Lower Cretaceous species is known, Hylaeochelys belli, identified in United Kingdom and Germany and defined in the first half of the 19th century. Less than a decade ago, the [...] Read more.
Hylaeochelys is the only thalassochelydian turtle identified in the Cretaceous record. A single Lower Cretaceous species is known, Hylaeochelys belli, identified in United Kingdom and Germany and defined in the first half of the 19th century. Less than a decade ago, the presence of Hylaeochelys in the Upper Jurassic was recognized through the find of a single partial shell from West-Central Portugal. It was attributed to a new species, Hylaeochelys kappa. Until now, no other Hylaeochelys specimen was known for either the Iberian Peninsula or the Jurassic record. Two new specimens attributable to Hylaeochelys, from two different Upper Jurassic outcrops of west-central Portugal, are presented here. Its systematic attribution is analyzed. Consequently, knowledge about the anatomy and intraspecific variability of Hylaeochelys kappa is increased. Full article
(This article belongs to the Special Issue Biology and Evolutionary History of Reptiles)
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24 pages, 2908 KiB  
Article
An Overview of Marine Non-Indigenous Species Found in Three Contrasting Biogeographic Metropolitan French Regions: Insights on Distribution, Origins and Pathways of Introduction
by Cécile Massé, Frédérique Viard, Suzie Humbert, Elvire Antajan, Isabelle Auby, Guy Bachelet, Guillaume Bernard, Vincent M. P. Bouchet, Thomas Burel, Jean-Claude Dauvin, Alice Delegrange, Sandrine Derrien-Courtel, Gabin Droual, Benoit Gouillieux, Philippe Goulletquer, Laurent Guérin, Anne-Laure Janson, Jérôme Jourde, Céline Labrune, Nicolas Lavesque, Jean-Charles Leclerc, Michel Le Duff, Vincent Le Garrec, Pierre Noël, Antoine Nowaczyk, Christine Pergent-Martini, Jean-Philippe Pezy, Aurore Raoux, Virginie Raybaud, Sandrine Ruitton, Pierre-Guy Sauriau, Nicolas Spilmont, Delphine Thibault, Dorothée Vincent and Amelia Curdadd Show full author list remove Hide full author list
Diversity 2023, 15(2), 161; https://doi.org/10.3390/d15020161 - 23 Jan 2023
Cited by 23 | Viewed by 5991
Abstract
Biological invasions are one of the main global threats to biodiversity in terrestrial, freshwater and marine ecosystems worldwide, requiring effective inventorying and monitoring programs. Here, we present an updated list of non-indigenous species in French marine and transitional waters. Focused on eukaryote pluricellular [...] Read more.
Biological invasions are one of the main global threats to biodiversity in terrestrial, freshwater and marine ecosystems worldwide, requiring effective inventorying and monitoring programs. Here, we present an updated list of non-indigenous species in French marine and transitional waters. Focused on eukaryote pluricellular species found throughout the three metropolitan French marine regions (Western Mediterranean Sea, Bay of Biscay and the Northern Seas), a total of 342 non-indigenous, including 42 cryptogenic, species are listed as having been introduced since the 13th century. The majority of the species originated from the temperate Northern Pacific. They mainly arrived through both ballast and hull fouling and also are associated with shellfish farming activities. Most of them have been introduced since the 1970s, a time when maritime and aquaculture trade intensified. Despite important human-aided opportunities for species transfer between the three marine regions (for instance, via recreational boating or aquaculture transfers), only a third of these NIS are common to all regions, as expected due to their environmental specificities. Full article
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22 pages, 1913 KiB  
Article
An Eudromaeosaurian Theropod from Lo Hueco (Upper Cretaceous. Central Spain)
by Elisabete Malafaia, Fernando Escaso, Rodolfo A. Coria and Francisco Ortega
Diversity 2023, 15(2), 141; https://doi.org/10.3390/d15020141 - 19 Jan 2023
Cited by 1 | Viewed by 6157
Abstract
The Lo Hueco fossil site (Cuenca, Spain) is one of the most relevant localities for the study of Late Cretaceous continental vertebrate faunas from Europe. The fossil record of theropod dinosaurs from this locality is represented by scarce isolated postcranial materials that were [...] Read more.
The Lo Hueco fossil site (Cuenca, Spain) is one of the most relevant localities for the study of Late Cretaceous continental vertebrate faunas from Europe. The fossil record of theropod dinosaurs from this locality is represented by scarce isolated postcranial materials that were preliminarily attributed to abelisaurids and to a possible giant bird, in addition to a large assemblage of isolated teeth that were related to different maniraptoran clades. Here, we describe an isolated partial left tibia articulated with the proximal tarsals and discuss their taxonomic affinities. A review of the European fossil record of Late Cretaceous theropods was performed to analyze possible changes in the faunistical composition during this period. The specimen from Lo Hueco exhibits some characters that have been interpreted as apomorphies for maniraptoran coelurosaurs and a combination of features compatible with deinonychosaurians. Within this clade, the specimen is more favorably comparable with velociraptorine dromaeosaurids and is tentatively interpreted as a member of this group. This specimen is one of the few non-dental specimens of dromaeosaurids described thus far from the Upper Cretaceous of the Iberian Peninsula and contributes to a better understanding of the composition and evolutionary history of the European theropod fauna during the last stages of the Mesozoic. Full article
(This article belongs to the Special Issue Fossil Reptiles and Associated Faunal Record)
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15 pages, 2501 KiB  
Article
Quantifying the Potential Water Filtration Capacity of a Constructed Shellfish Reef in a Temperate Hypereutrophic Estuary
by Alan Cottingham, Andrew Bossie, Fiona Valesini, James R. Tweedley and Eve Galimany
Diversity 2023, 15(1), 113; https://doi.org/10.3390/d15010113 - 13 Jan 2023
Cited by 11 | Viewed by 3156
Abstract
Shellfish reefs have been lost from bays and estuaries globally, including in the Swan-Canning Estuary in Western Australia. As part of a national program to restore the ecosystem services that such reefs once provided and return this habitat from near extinction, the mussel [...] Read more.
Shellfish reefs have been lost from bays and estuaries globally, including in the Swan-Canning Estuary in Western Australia. As part of a national program to restore the ecosystem services that such reefs once provided and return this habitat from near extinction, the mussel Mytilus galloprovincialis was selected for a large-scale shellfish reef construction project in this estuary. To assess the potential filtration capacity of the reef, estuary seston quality, mussel feeding behavior, and valve gape activity were quantified in the laboratory and field during winter and summer. In general, estuary water contained high total particulate concentrations (7.9–8.7 mg L−1). Standard clearance rates were greater in winter (1.9 L h−1; 17 °C) than in summer (1.3 L h−1; 25 °C), the latter producing extremely low absorption efficiencies (37%). Mussel valves remained open ~97% and ~50% of the time in winter and summer, respectively. They often displayed erratic behavior in summer, possibly due to elevated temperatures and the toxic microalgae Alexandrium spp. Despite numerous stressors, the reef, at capacity, was estimated to filter 35% of the total volume of the estuary over winter, incorporating 42.7 t of organic matter into mussel tissue. The reefs would thus make a substantial contribution to improving estuary water quality. Full article
(This article belongs to the Special Issue Diversity and Ecology of Marine Benthic Communities)
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18 pages, 4726 KiB  
Article
Exploring Old Data with New Tricks: Long-Term Monitoring Indicates Spatial and Temporal Changes in Populations of Sympatric Prairie Grouse in the Nebraska Sandhills
by Danielle J. Berger, Jeffrey J. Lusk, Larkin A. Powell and John P. Carroll
Diversity 2023, 15(1), 114; https://doi.org/10.3390/d15010114 - 13 Jan 2023
Cited by 2 | Viewed by 3120
Abstract
The contiguous grasslands of the Sandhills region in Nebraska, USA, provide habitat for two sympatric, grassland-obligate species of grouse, the greater prairie-chicken (Tympanuchus cupido pinnatus) and the plains sharp-tailed grouse (Tympanuchus phasianellus jamesi). Collectively referred to as prairie grouse, [...] Read more.
The contiguous grasslands of the Sandhills region in Nebraska, USA, provide habitat for two sympatric, grassland-obligate species of grouse, the greater prairie-chicken (Tympanuchus cupido pinnatus) and the plains sharp-tailed grouse (Tympanuchus phasianellus jamesi). Collectively referred to as prairie grouse, these birds are monitored and managed jointly by wildlife practitioners who face the novel challenge of conserving historically allopatric species in shared range. We reconstructed region-wide and route-specific prairie grouse population trends in the Sandhills, using a 63-year timeseries of breeding ground counts aggregated from old reports and paper archives. Our objective was to repurpose historical data collected for harvest management to address questions pertinent to the conservation of prairie grouse, species whose populations have declined precipitously throughout their respective ranges. Because we cannot change the sampling protocol of historical data to answer new questions, we applied 3 different methods of data analysis—traditional regional mean counts used to adjust harvest regulations, spatially implicit, site-specific counts, and spatially explicit trends. Prairie-chicken populations have increased since the 1950s, whereas sharp-tailed grouse populations have remained stable or slightly declined. However, each species exhibited unique shifts in abundance and distribution over time, and regional indices masked important aspects of population change. Our findings indicate that legacy data have the capacity to tell new stories apart from the questions they were collected to answer. By integrating concepts from landscape ecology—a discipline that emerged decades after the collection of our count data began—we demonstrate the potential of historical data to address questions of modern-day conservation concern, using prairie grouse as a case study. Full article
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12 pages, 1288 KiB  
Article
Population Subdivision in the Gopher Frog (Rana capito) across the Fragmented Longleaf Pine-Wiregrass Savanna of the Southeastern USA
by Thomas J. Devitt, Kevin M. Enge, Anna L. Farmer, Peter Beerli, Stephen C. Richter, Jeffrey G. Hall and Stacey L. Lance
Diversity 2023, 15(1), 93; https://doi.org/10.3390/d15010093 - 11 Jan 2023
Cited by 5 | Viewed by 3091
Abstract
Delineating genetically distinct population segments of threatened species and quantifying population connectivity are important steps in developing effective conservation and management strategies aimed at preventing extinction. The gopher frog (Rana capito) is a xeric-adapted, pond-breeding species endemic to the Gulf and [...] Read more.
Delineating genetically distinct population segments of threatened species and quantifying population connectivity are important steps in developing effective conservation and management strategies aimed at preventing extinction. The gopher frog (Rana capito) is a xeric-adapted, pond-breeding species endemic to the Gulf and Atlantic coastal plains of the southeastern United States. This species has experienced extensive habitat loss and fragmentation in the formerly widespread longleaf pine-wiregrass savanna where it lives, resulting in individual abundance declines and population extinctions throughout its range. We used individual-based clustering methods along with Bayesian inference of historical migration based on almost 1500 multilocus microsatellite genotypes to examine genetic structure in this taxon. Clustering analyses identified panhandle and peninsular populations in Florida as distinct genetic clusters separated by the Aucilla River, consistent with the division between the Coastal Plain and peninsular mitochondrial lineages, respectively. Analysis of historical migration indicated an east–west population divergence event followed by immigration to the east. Together, our results indicate that the genetically distinct Coastal Plain and peninsular Florida lineages should be considered separately for conservation and management purposes. Full article
(This article belongs to the Special Issue Amphibian Ecology in Geographically Isolated Wetlands)
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10 pages, 899 KiB  
Article
Macro-moth (Lepidoptera) Diversity of a Newly Shaped Ecological Corridor and the Surrounding Forest Area in the Western Italian Alps
by Irene Piccini, Marta Depetris, Federica Paradiso, Francesca Cochis, Michela Audisio, Patrick Artioli, Stefania Smargiassi, Marco Bonifacino, Davide Giuliano, Sara La Cava, Giuseppe Rijllo, Simona Bonelli and Stefano Scalercio
Diversity 2023, 15(1), 95; https://doi.org/10.3390/d15010095 - 11 Jan 2023
Cited by 9 | Viewed by 3801
Abstract
In addition to the compilation of biodiversity inventories, checklists, especially if combined with abundance data, are important tools to understand species distribution, habitat use, and community composition over time. Their importance is even higher when ecological indicator taxa are considered, as in the [...] Read more.
In addition to the compilation of biodiversity inventories, checklists, especially if combined with abundance data, are important tools to understand species distribution, habitat use, and community composition over time. Their importance is even higher when ecological indicator taxa are considered, as in the case of moths. In this work, we investigated macro-moth diversity in a forest area (30 ha) in the Western Italian Alps, recently subjected to intense management activities. Indeed, an ecological corridor, which includes 10 clearings, has been shaped thanks to forest compensation related to the construction site of the Turin–Lyon High-Speed Railway. Here, we identified 17 patches (9 clearings and 8 forests), and we conducted moth surveys using UV–LED light traps. A total of 15,614 individuals belonging to 442 species were collected in 2020 and 2021. Two and fifteen species are new records for Piedmont and for Susa Valley, respectively. In addition to the faunistic interest of the data, this study—using a standardized method—provides geo-referenced occurrences, species-richness, and abundance values useful to compile a baseline dataset for future comparisons. Indeed, the replicable and easy shareable method allows us to make comparisons with other research and thus assess the impact of environmental changes. Full article
(This article belongs to the Special Issue Zoological Checklists: From Natural History Museums to Ecosystems)
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18 pages, 7299 KiB  
Article
The Big Five: Species Distribution Models from Citizen Science Data as Tool for Preserving the Largest Protected Saproxylic Beetles in Italy
by Lara Redolfi De Zan, Sarah Rossi de Gasperis, Vincenzo Andriani, Marco Bardiani, Alessandro Campanaro, Silvia Gisondi, Sönke Hardersen, Emanuela Maurizi, Fabio Mosconi, Gianluca Nardi, Livia Zapponi, Pasquale Rombolà and Federico Romiti
Diversity 2023, 15(1), 96; https://doi.org/10.3390/d15010096 - 11 Jan 2023
Cited by 8 | Viewed by 4145
Abstract
Background. Volunteers’ participation in scientific research has increased in recent decades. Citizen science (CS) data have been used in quantitative ecology to analyse species ranges by means of species distribution models. We investigated the Italian distribution of five large saproxylic beetles (big [...] Read more.
Background. Volunteers’ participation in scientific research has increased in recent decades. Citizen science (CS) data have been used in quantitative ecology to analyse species ranges by means of species distribution models. We investigated the Italian distribution of five large saproxylic beetles (big five), to describe their niche space, paramount areas for their conservation, and conservation gaps. Methods. CS data from two projects, climate and environmental variables were used to produce Habitat suitability (HS) maps for each species and averaged HS maps. The big five’s conservation status was assessed interpolating HS maps with the distribution of protected areas, concomitantly identifying conservation gaps. Results. The pre-alpine and Apennines arcs, north-eastern Sicily and eastern Sardinia, were identified as conservation’s hotspots. Ranking HS levels from minimum to optimal, the extent of conservation gaps decreases as environmental suitability for the big five increases. Conclusions. For the first time in Italy, CS data have been used to investigate niche space of the largest protected saproxylic beetles and analyse the distribution of their suitable habitat. The resulting HS raster maps and vector layers, reporting HS value in all Italian protected areas (n° 3771), were provided and discussed, reporting an application example for conservation purposes. Full article
(This article belongs to the Special Issue Biodiversity in Italy: Past and Future Perspectives)
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22 pages, 2537 KiB  
Article
A Phased Approach to Increase Human Tolerance in Elephant Corridors to Link Protected Areas in Southern Mozambique
by Michelle D. Henley, Robin M. Cook, Anka Bedetti, Jessica Wilmot, Adine Roode, Carlos L. Pereira, João Almeida and António Alverca
Diversity 2023, 15(1), 85; https://doi.org/10.3390/d15010085 - 9 Jan 2023
Cited by 10 | Viewed by 6310
Abstract
Pathfinding elephants are moving through human dominated landscapes, often across international boundaries, thereby playing a vital role in connecting protected areas. Their movements are a call to action to not only understand their spatial requirements but to urgently work towards innovative ways to [...] Read more.
Pathfinding elephants are moving through human dominated landscapes, often across international boundaries, thereby playing a vital role in connecting protected areas. Their movements are a call to action to not only understand their spatial requirements but to urgently work towards innovative ways to make people’s livelihoods compatible with conservation outcomes so that coexistence and connected landscapes can prevail. We discuss the first three phases of a long-term strategy to conserve elephant corridors whilst incorporating the socio-economic needs of the people that share the landscape with them. We present a comprehensive satellite-tracking history of elephants across two transfrontier conservation areas (TFCA), represented by Great Limpopo- and Lubombo TFCAs and involving four countries (South Africa, Zimbabwe, Mozambique and Eswatini) to flag where linking corridors exist. We use innovative cafeteria-style experiments to understand which elephant-unpalatable plants would offer lucrative alternative income streams to farmers living in human–elephant-conflict hotspots. The most suitable unpalatable plants are chosen based not only on whether they are unpalatable to elephants, but also on their life history traits and growth prerequisites. We consider a combination of potential economic values (food, essential oil, medicinal and bee fodder value) to ensure that selected plants would accommodate changing economic markets. Lastly, we highlight the importance of combining food security measures with ensuring people’s safety by means of deploying rapid-response units. By implementing these three phases as part of a longer-term strategy, we draw closer to ensuring the protection of bioregions to achieve biodiversity objectives at a landscape scale. Full article
(This article belongs to the Special Issue Elephants: Moving from Conflict to Coexistence with People)
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14 pages, 2223 KiB  
Article
Mind the Gaps: Taxonomic, Geographic and Temporal Data of Marine Invertebrate Databases from Mozambique and São Tomé and Príncipe
by Marta Bento, Henrique Niza, Alexandra Cartaxana, Salomão Bandeira, José Paula and Alexandra Marçal Correia
Diversity 2023, 15(1), 70; https://doi.org/10.3390/d15010070 - 5 Jan 2023
Cited by 1 | Viewed by 3985
Abstract
One of the best ways to share and disseminate biodiversity information is through the digitization of data and making it available via online databases. The rapid growth of publicly available biodiversity data is not without problems which may decrease the utility of online [...] Read more.
One of the best ways to share and disseminate biodiversity information is through the digitization of data and making it available via online databases. The rapid growth of publicly available biodiversity data is not without problems which may decrease the utility of online databases. In this study we analyze taxonomic, geographic and temporal data gaps, and bias related to existing data on selected marine invertebrate occurrences along the coastline of two African countries, Mozambique and São Tomé and Príncipe. The final marine invertebrate dataset comprises of 19.910 occurrences, but 32% of the original dataset occurrences were excluded due to data gaps. Most marine invertebrates in Mozambique were collected in seagrasses, whereas in São Tomé and Príncipe they were mostly collected offshore. The dataset has a temporal coverage from 1816 to 2019, with most occurrences collected in the last two decades. This study provides baseline information relevant to a better understanding of marine invertebrate biodiversity data gaps and bias in these habitats along the coasts of these countries. The information can be further applied to complete marine invertebrate data gaps contributing to design informed sampling strategies and advancing refined datasets that can be used in management and conservation plans in both countries. Full article
(This article belongs to the Special Issue Mapping Marine Biodiversity Knowledge Gaps Using Open Data)
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17 pages, 4401 KiB  
Article
Low Bioerosion Rates on Inshore Turbid Reefs of Western Australia
by Shannon Dee, Thomas DeCarlo, Ivan Lozić, Jake Nilsen and Nicola K. Browne
Diversity 2023, 15(1), 62; https://doi.org/10.3390/d15010062 - 4 Jan 2023
Cited by 9 | Viewed by 3615
Abstract
Bioerosion on inshore reefs is expected to increase with global climate change reducing reef stability and accretionary potential. Most studies investigating bioerosion have focused on external grazers, such as parrotfish and urchins, whose biomass is more easily measured. Yet, cryptic endolithic bioeroders such [...] Read more.
Bioerosion on inshore reefs is expected to increase with global climate change reducing reef stability and accretionary potential. Most studies investigating bioerosion have focused on external grazers, such as parrotfish and urchins, whose biomass is more easily measured. Yet, cryptic endolithic bioeroders such as macroboring (worms, sponges and bivalves) and microboring taxa (fungus and algae) have the potential to be the dominant source of reef erosion, especially among inshore reef systems exposed to increased nutrient supply. We measured bioerosion rates of bioeroder functional groups (microborers, macroborers, and grazers), and their response to environmental parameters (temperature, light, turbidity, chlorophyll a), as well as habitat variables (coral cover, turfing algae, macroalgae) across two inshore turbid reefs of north Western Australia. Total bioerosion rates were low (0.163 ± 0.012 kg m−2 year−1) likely due to low light and nutrient levels. Macroborers were the dominant source of bioerosion and were positively correlated with turfing algae cover, highlighting the role of turf-grazing fish on endolithic bioerosion rates. Overall low bioerosion rates suggest that despite the reduced coral cover and carbonate production, these reefs may still maintain positive reef accretion rates, at least under current environmental conditions. However, an improved understanding of relationships between environmental drivers, habitat and grazing pressure with bioeroding communities is needed to improve predictions of reef carbonate loss with future climate change. Full article
(This article belongs to the Special Issue Marginal Reef Systems: Resilience in A Rapidly Changing World)
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24 pages, 2816 KiB  
Article
Lungfish and the Long Defeat
by Anne Kemp
Diversity 2023, 15(1), 63; https://doi.org/10.3390/d15010063 - 4 Jan 2023
Cited by 1 | Viewed by 4129
Abstract
Australia has an excellent fossil record of lungfish that begins in the Devonian and includes many species in Tertiary and Quaternary deposits. The extant Australian lungfish, Neoceratodus forsteri, occurs in Pliocene deposits, but is now restricted to a handful of coastal rivers [...] Read more.
Australia has an excellent fossil record of lungfish that begins in the Devonian and includes many species in Tertiary and Quaternary deposits. The extant Australian lungfish, Neoceratodus forsteri, occurs in Pliocene deposits, but is now restricted to a handful of coastal rivers in Queensland. Some of the fossil taxa, belonging to species related to N. forsteri, are represented by only a few specimens, but others include large numbers of tooth plates. The existence of these taxa, even if they are represented by only a few specimens, indicates that lungfish were present in lakes and rivers in central and northern Australia in the past, and that the potential habitats for these fish were more extensive then than they are now. Many of the fossil populations died out because Australia became more arid, and the remaining species became isolated in large river systems in the north and east of the continent. However, the cause of extinction of some fossil populations was not always related to increasing aridity. Several fossil populations were apparently living in poor conditions. They stopped spawning and adding new members to the population. The remaining individuals showed advanced age and many diseases before the population disappeared. This can be observed in the present day, and one population in an isolated reservoir is already extinct. Full article
(This article belongs to the Special Issue Evolution and Diversity of Fishes in Deep Time)
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17 pages, 3930 KiB  
Article
A Solemys Skull from the Late Cretaceous of Southern France
by Haiyan Tong, Eric Buffetaut, Patrick Méchin, Annie Méchin-Salessy and Julien Claude
Diversity 2023, 15(1), 58; https://doi.org/10.3390/d15010058 - 3 Jan 2023
Cited by 3 | Viewed by 3468
Abstract
The first skull of Solemys (Testudines: Helochlydridae) is reported from the Late Cretaceous (Rognacian) Bastide Neuve locality, Fox Amphoux, Var, France. It is assigned to Solemys gaudryi (Matheron, 1869) on the basis of associated shell elements. Our study provides new insights regarding the [...] Read more.
The first skull of Solemys (Testudines: Helochlydridae) is reported from the Late Cretaceous (Rognacian) Bastide Neuve locality, Fox Amphoux, Var, France. It is assigned to Solemys gaudryi (Matheron, 1869) on the basis of associated shell elements. Our study provides new insights regarding the skull morphology of the family Helochelydridae and suggests that Helochelydra from England and Naomichelys from North America appear to be closer to each other than to Solemys. Full article
(This article belongs to the Special Issue Women’s Special Issue Series: Diversity)
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23 pages, 6858 KiB  
Article
Mediterranean Matters: Revision of the Family Onchidorididae (Mollusca, Nudibranchia) with the Description of a New Genus and a New Species
by Giulia Furfaro, Egidio Trainito, Marco Fantin, Marcella D’Elia, Enric Madrenas and Paolo Mariottini
Diversity 2023, 15(1), 38; https://doi.org/10.3390/d15010038 - 29 Dec 2022
Cited by 10 | Viewed by 3411
Abstract
The Mediterranean Sea hosts a great Nudibranchia diversity and has proved to be particularly intriguing in the case of the family Onchidorididae, a group of dorid nudibranchs that lately increased its diversity with the addition of one recently described Mediterranean species. The Onchidorididae [...] Read more.
The Mediterranean Sea hosts a great Nudibranchia diversity and has proved to be particularly intriguing in the case of the family Onchidorididae, a group of dorid nudibranchs that lately increased its diversity with the addition of one recently described Mediterranean species. The Onchidorididae family has a troubled systematic history to date, characterized by uncertainties and genera that are considered valid or not, according to the different authors. This confused taxonomy reflects the lack of a broad and comprehensive view on the phylogenetic relationships occurring between Onchidorididae members, an incorrect interpretation of the diagnostic morphological characters, and a poor knowledge of important biological aspects characterizing the different genera included in the family. To shed some light on the systematics of Onchidorididae, an integrative taxonomic revision was carried out involving morphological, ecological, and molecular analyses on an updated dataset. Mediterranean specimens and species were added to the dataset of the already known Onchidorididae and a new species from the Adriatic Sea (Central Mediterranean Sea) is described here. Furthermore, historical controversies are clarified due to the discovery of new important synapomorphies useful to define genera belonging to the Onchidorididae family and to describe a new genus. Finally, the taxonomic status of all the known Onchidorididae species is investigated and discussed, filling the gap of knowledge on neglected species. Full article
(This article belongs to the Special Issue Systematics and Evolution of Gastropods)
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60 pages, 25670 KiB  
Article
The Ant Genus Cardiocondyla (Hymenoptera: Formicidae): The Species Groups with Oriental and Australasian Origin
by Bernhard Seifert
Diversity 2023, 15(1), 25; https://doi.org/10.3390/d15010025 - 23 Dec 2022
Cited by 9 | Viewed by 6190
Abstract
The world-wide fauna of the genus Cardiocondyla is assessed to have 79 currently recognized species and is subdivided into 14 informal species groups plus three monotypical clades. It is argued that the phylogenetic placement of Cardiocondyla next to the genus Ocymyrmex Emery, 1886 [...] Read more.
The world-wide fauna of the genus Cardiocondyla is assessed to have 79 currently recognized species and is subdivided into 14 informal species groups plus three monotypical clades. It is argued that the phylogenetic placement of Cardiocondyla next to the genus Ocymyrmex Emery, 1886 as proposed by Blaimer et al. (2018) is doubtful. The main body of the paper is a species-level taxonomic revision of those six species groups and the one monotypical clade which have their centers of origin in the Oriental and Australasian regions. The fauna of this area comprises 26 species eleven of which are described as new: Cardiocondyla schulzi n.sp., C. argentea n.sp., C. semiargentea n.sp., C. argyrotricha n.sp., C. latifrons n.sp., C. micropila n.sp., C. allonivalis n.sp., C. excavata n.sp., C. goroka n.sp., C. subspina n.sp. and C. sulcata n.sp. Recognized as junior synonyms were: Cardiocondyla tsukuyomi Terayama, 1999 and C. breviscapus Seifert, 2003 of C. minutior Forel, 1899 and C. brevispinosa (Donisthorpe, 1948) of C. paradoxa Emery, 1897. Each confirmed species is characterized by verbal descriptions, 18 numerically recorded phenotypic characters, z-stack images in three viewing positions, the key, a differential diagnosis and, if available, a brief life history. Exploratory and hypothesis-driven data analyses of phenotypic characters support the separation of the cryptic species Cardiocondyla minutior Forel, 1899, C. goa Seifert, 2003 and C. tjibodana Karavajev, 1935, two of which have dispersed as tramp species to the New World. Missing development of postzygotic isolation due to very strong prezygotic barriers is indicated in the closely related species Cardiocondyla latifrons n.sp. and C. micropila n.sp. which produce fertile hybrids in laboratory rearings but apparently do not hybridize in a natural context even if nesting in close neighborhood. The strong prezygotic isolation is supposed to be generated by the prevalence of intranidal mating and the difficulty for a mated heterospecific gyne to become accepted in a foreign colony. Full article
(This article belongs to the Special Issue Diversity, Systematics and Evolution of Hymenoptera)
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27 pages, 7105 KiB  
Review
The Orchids of Wetland Vegetation in the Central Balkans
by Vladan Djordjević, Svetlana Aćić, Eva Kabaš, Predrag Lazarević, Spyros Tsiftsis and Dmitar Lakušić
Diversity 2023, 15(1), 26; https://doi.org/10.3390/d15010026 - 23 Dec 2022
Cited by 8 | Viewed by 4778
Abstract
Wetland ecosystems are important habitats for the growth and survival of numerous terrestrial orchids in Europe. This study reviews the current knowledge on the orchids of wetland vegetation in the Central Balkans. The orchid flora was analyzed from taxonomic, phytogeographical, ecological and conservation [...] Read more.
Wetland ecosystems are important habitats for the growth and survival of numerous terrestrial orchids in Europe. This study reviews the current knowledge on the orchids of wetland vegetation in the Central Balkans. The orchid flora was analyzed from taxonomic, phytogeographical, ecological and conservation aspects. The most important taxa include the two Balkan endemics (Dactylorhiza cordigera subsp. bosniaca and D. kalopissi subsp. macedonica) and the three subendemics of the Balkans and the Carpathians (Dactylorhiza cordigera subsp. cordigera, D. maculata subsp. transsilvanica and Gymnadenia frivaldii), as well as a considerable number of Central European, Eurasian and boreal orchid representatives. Several orchid taxa occurring in the wet meadows and fens of the Central Balkans have a southern limit of their distribution in this part of Europe, suggesting that wetlands are important refuges for them. In total, 33 orchid taxa were recorded in plant communities from five classes, 10 orders and 17 alliances. Most orchid taxa grow in the following wetland vegetation types: wet meadows (class Molinio-Arrhenatheretea, order Molinietalia caeruleae, alliances Molinion caeruleae, Deschampsion cespitosae and Calthion palustris); fens (class Scheuchzerio palustris-Caricetea fuscae, order Caricetalia fuscae, alliance Caricion fuscae); tall-herb vegetation along mountain streams and springs (class Mulgedio-Aconitetea); marshes and herb-land vegetation of freshwater or brackish water bodies (class Phragmito-Magnocaricetea). This study highlights the importance of serpentine and silicate wetland vegetation types as important habitats for the survival of terrestrial orchids. In addition, detailed taxonomic, ecological and chorological studies of the wetland orchids of the Central Balkans need to be carried out in order to establish a successful plan for their conservation. Full article
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50 pages, 2174 KiB  
Article
Status and Trends in the Rate of Introduction of Marine Non-Indigenous Species in European Seas
by Argyro Zenetos, Konstantinos Tsiamis, Marika Galanidi, Natacha Carvalho, Cátia Bartilotti, João Canning-Clode, Luca Castriota, Paula Chainho, Robert Comas-González, Ana C. Costa, Branko Dragičević, Jakov Dulčić, Marco Faasse, Ann-Britt Florin, Arjan Gittenberger, Hans Jakobsen, Anders Jelmert, Francis Kerckhof, Maiju Lehtiniemi, Silvia Livi, Kim Lundgreen, Vesna Macic, Cécile Massé, Borut Mavrič, Rahmat Naddafi, Martina Orlando-Bonaca, Slavica Petovic, Lydia Png-Gonzalez, Aina Carbonell Quetglas, Romeu S. Ribeiro, Tiago Cidade, Sander Smolders, Peter A. U. Stæhr, Frederique Viard and Okko Outinenadd Show full author list remove Hide full author list
Diversity 2022, 14(12), 1077; https://doi.org/10.3390/d14121077 - 6 Dec 2022
Cited by 50 | Viewed by 8217
Abstract
Invasive alien species are a major worldwide driver of biodiversity change. The current study lists verified records of non-indigenous species (NIS) in European marine waters until 2020, with the purpose of establishing a baseline, assessing trends, and discussing appropriate threshold values for good [...] Read more.
Invasive alien species are a major worldwide driver of biodiversity change. The current study lists verified records of non-indigenous species (NIS) in European marine waters until 2020, with the purpose of establishing a baseline, assessing trends, and discussing appropriate threshold values for good environmental status (GES) according to the relevant European legislation. All NIS records were verified by national experts and trends are presented in six-year assessment periods from 1970 to 2020 according to the European Union Marine Strategy Framework Directive. Altogether, 874 NIS have been introduced to European marine waters until 2020 with the Mediterranean Sea and North-East Atlantic Ocean hosting most of the introductions. Overall, the number of new introductions has steadily increased since 2000. The annual rate of new introductions reached 21 new NIS in European seas within the last six-year assessment period (2012–2017). This increase is likely due to increased human activities and research efforts that have intensified during the early 21st century within European Seas. As Europe seas are not environmentally, nor geographically homogenous, the setting of threshold values for assessing GES requires regional expertise. Further, once management measures are operational, pathway-specific threshold values would enable assessing the effectiveness of such measures. Full article
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31 pages, 9483 KiB  
Article
Detailed Description and Morphological Assessment of Sepia typica (Steenstrup, 1875) (Cephalopoda: Sepiidae)
by Robin W. Leslie, Anthony J. Richardson and Marek R. Lipiński
Diversity 2022, 14(12), 1073; https://doi.org/10.3390/d14121073 - 5 Dec 2022
Cited by 2 | Viewed by 2900
Abstract
A detailed systematic account of Sepia (Hemisepius) typica, an endemic southern African species of cuttlefish, is presented. An analysis of morphological data (morphometric and meristic characters) suggests that S. typica is a single well-established species without morphs or subspecies. It is, however, [...] Read more.
A detailed systematic account of Sepia (Hemisepius) typica, an endemic southern African species of cuttlefish, is presented. An analysis of morphological data (morphometric and meristic characters) suggests that S. typica is a single well-established species without morphs or subspecies. It is, however, highly variable, perhaps more so than other small sepiids from the region, and there are slight, but significant indications of population structure. Therefore, molecular biological studies based upon a large sample could help investigate broad genetic patterns in what morphologically appears to be a single highly variable species. Full article
(This article belongs to the Special Issue Taxonomy, Biology and Evolution of Cephalopods)
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22 pages, 2505 KiB  
Article
Climate Change Is Driving Shifts in Dragonfly Species Richness across Europe via Differential Dynamics of Taxonomic and Biogeographic Groups
by Kent Olsen, Jens-Christian Svenning and Henrik Balslev
Diversity 2022, 14(12), 1066; https://doi.org/10.3390/d14121066 - 3 Dec 2022
Cited by 8 | Viewed by 4376
Abstract
Understanding how changes in species richness pattern correlate with range changes in different taxonomic and biogeographic groups is important for conservation because it allows for generalizations about which species are at greatest risk. Here, we assessed whether changes in species richness patterns result [...] Read more.
Understanding how changes in species richness pattern correlate with range changes in different taxonomic and biogeographic groups is important for conservation because it allows for generalizations about which species are at greatest risk. Here, we assessed whether changes in species richness patterns result from generalized range shifts across taxonomic and biogeographic groups or from changes in specific subsets of species. Using data from 1988 and from 2010, we studied changes in distributional range of European dragonfly species, using outline distribution maps for all dragonflies combined and separately for taxonomic suborders (Zygoptera and Anisoptera) and biogeographic groups (Boreo-alpine, Eurasian, Mediterranean, and Tropical). The results demonstrated differing range dynamics for Zygoptera and Anisoptera, with Anisoptera driving local turnover in species richness to a greater extent than Zygoptera. The distributional range of Tropical and Mediterranean species had expanded to a much greater extent than that of Eurasian and Boreo-alpine species. Large-scale changes in species richness arose from several divergent, group-specific processes. Overall, local diversity especially declined in parts of southern and south-eastern Europe, reflecting local losses in multiple species rather than major range contractions among Mediterranean or Eurasian species. In fact, among the biogeographic groups, overall range declines were most prominent among Boreo-alpine species, highlighting the particular threat from climate change to this group. Full article
(This article belongs to the Special Issue Diversity, Ecology and Evolution of Odonata)
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15 pages, 4442 KiB  
Article
New Fossils of Stegosaurs from the Upper Jurassic of the Eastern Iberian Peninsula (Spain)
by Sergio Sánchez-Fenollosa, Maite Suñer and Alberto Cobos
Diversity 2022, 14(12), 1047; https://doi.org/10.3390/d14121047 - 29 Nov 2022
Cited by 5 | Viewed by 4769
Abstract
The eastern Iberian Peninsula is one of the places with most stegosaur fossils in all of Europe. In the present study, we describe new remains from six different fossil sites from the Upper Jurassic of the Villar del Arzobispo Formation (Kimmeridgian–Tithonian). The remains [...] Read more.
The eastern Iberian Peninsula is one of the places with most stegosaur fossils in all of Europe. In the present study, we describe new remains from six different fossil sites from the Upper Jurassic of the Villar del Arzobispo Formation (Kimmeridgian–Tithonian). The remains comprise: a left humerus from CT-61 (El Castellar, Teruel), a dermal spine from Puntal de la Magdalena (Alpuente, Valencia), two caudal neural arches and five caudal vertebrae from Cañada París (Alpuente, Valencia), two caudal centra from Alpuente (Valencia) and four caudal vertebrae from Barrihonda-El Humero (Riodeva, Teruel). The left humerus (CT-61-1) and dermal spine (MPA D-110) are referred to Stegosauria indet. The caudal vertebrae from Alpuente (Cañada París specimen, MPA-653 and MPA D-1086) are referred to cf. Dacentrurus sp. Finally, the caudal vertebrae from Riodeva (Barrihonda-El Humero specimen) are referred to Dacentrurus armatus and assigned to a previously known caudal series from this site. The presence of abundant localities with stegosaurian remains reaffirms the important role of stegosaur dinosaurs in Late Jurassic coastal ecosystems. Full article
(This article belongs to the Special Issue Fossil Reptiles and Associated Faunal Record)
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42 pages, 10504 KiB  
Article
A New Large †Pachycormiform (Teleosteomorpha: †Pachycormiformes) from the Lower Jurassic of Germany, with Affinities to the Suspension-Feeding Clade, and Comments on the Gastrointestinal Anatomy of Pachycormid Fishes
by Samuel L. A. Cooper, Sam Giles, Holly Young and Erin E. Maxwell
Diversity 2022, 14(12), 1026; https://doi.org/10.3390/d14121026 - 24 Nov 2022
Cited by 10 | Viewed by 4831
Abstract
Pachycormiformes is a diverse clade of stem-teleost actinopterygian fishes with a stratigraphic range from the Lower Jurassic (Toarcian) to Upper Cretaceous (Maastrichtian). The Toarcian Posidonienschiefer Formation in SW Germany records the earliest occurrence of †Pachycormiformes in the fossil record, offering unique and crucial [...] Read more.
Pachycormiformes is a diverse clade of stem-teleost actinopterygian fishes with a stratigraphic range from the Lower Jurassic (Toarcian) to Upper Cretaceous (Maastrichtian). The Toarcian Posidonienschiefer Formation in SW Germany records the earliest occurrence of †Pachycormiformes in the fossil record, offering unique and crucial insight into the clade’s origins and early adaptive radiation in the Early Jurassic. However, Early Jurassic taxa remain poorly studied with the taxonomic diversity and stratigraphic/geographic distributions insufficiently defined, thus masking the early part of this evolutionary radiation. Here, we report a new genus and species of pachycormid fish from the Posidonienschiefer Formation identified by phylogenetic analysis as falling in an intermediate position between Saurostomus and Ohmdenia at the base of the suspension-feeding clade. The new taxon shows a unique suite of cranial and postcranial characters. Several synapomorphies of the suspension-feeding clade, notably, the morphology of the hyomandibula, elongation of the skull, and reduced squamation are shared with the new taxon. The intestinal tract is exceptionally preserved, providing one of the most complete examples of pachycormid gastric anatomy. A comparison of the gastrointestinal anatomy of the new genus with other pachycormiforms indicates extensive taxonomic variation within the clade, in the configuration of both the midgut and spiral valve, potentially related to trophic divergence. The results highlight an underestimated high diversity and the rapid acquisition of trophic specializations in Pachycormiformes much earlier in the clade’s evolution than previously considered. Full article
(This article belongs to the Special Issue Evolution and Diversity of Fishes in Deep Time)
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18 pages, 1958 KiB  
Article
Does Temporal and Spatial Diet Alteration Lead to Successful Adaptation of the Eastern Imperial Eagle, a Top Predator?
by Dimitar Demerdzhiev, Zlatozar Boev, Dobromir Dobrev, Nedko Nedyalkov and Tseno Petrov
Diversity 2022, 14(11), 1000; https://doi.org/10.3390/d14111000 - 19 Nov 2022
Cited by 5 | Viewed by 2218
Abstract
Predator–prey interactions may be linked to different temporal or spatial patterns, including dynamics in prey populations. Therefore, understanding the adaptive capacity and how top predators respond to shifts in prey abundance and availability is crucial for their conservation. In this study, we investigated [...] Read more.
Predator–prey interactions may be linked to different temporal or spatial patterns, including dynamics in prey populations. Therefore, understanding the adaptive capacity and how top predators respond to shifts in prey abundance and availability is crucial for their conservation. In this study, we investigated the diet pattern of the endangered Eastern Imperial Eagle facing long-term and large-scale changes. We studied the abundance variation of its profitable prey, sousliks, and how it reflected on eagle population trajectories in a regional and temporal context. We found a significant diet alteration expressed in large decrease of brown hare (β2 = −0.83), poultry (β2 = −0.81), gulls (β2 = −0.71), and water birds (β2 = −0.57), and an obvious increase of northern white-breasted hedgehog (β2 = 0.61) and doves (β2 = 0.60). Raptors and owls raised their participation (β2 = 0.44), but white stork and different reptiles supplied more biomass. Abundance of European souslik decreased through the studied periods (adjusted R2 = 0.25, p < 0.001) which accounted for the lower proportion of this prey in the eagle’s diet. Nevertheless, the eagle population successfully adapted and significantly increased (β2 = 0.97) in most of the distribution area. The trophic strategy used by this top predator related to opportunistic foraging represents an ecological advantage that allows the species to adapt to different habitats and guarantees its future. The observed prolonged diet alteration could result in a significant negative attitude among different groups such as hunters, pigeon fanciers, and poultry keepers towards eagles. Therefore, enhanced communication with key stakeholders is needed. Conservation efforts should be focused also on the preservation of the species’ main foraging habitats and the restoration of damaged ones so as to maintain the good conditions of both primary food source and subsequent prey. Full article
(This article belongs to the Special Issue Conservation and Ecology of Raptors)
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20 pages, 9851 KiB  
Article
The Inland Cladocera and Copepoda Fauna in Greece
by Georgia Stamou, Polyxeni Kourkoutmani and Evangelia Michaloudi
Diversity 2022, 14(11), 997; https://doi.org/10.3390/d14110997 - 18 Nov 2022
Cited by 3 | Viewed by 2815
Abstract
Greece is situated in the East Mediterranean region and in the Balkan peninsula, i.e., a European biodiversity hotspot with high endemism in subterranean and freshwater fauna, highlighting the need to understand its biodiversity. A literature search was undertaken to present a checklist of [...] Read more.
Greece is situated in the East Mediterranean region and in the Balkan peninsula, i.e., a European biodiversity hotspot with high endemism in subterranean and freshwater fauna, highlighting the need to understand its biodiversity. A literature search was undertaken to present a checklist of cladocerans and copepods based on a compilation of published and current data, from 1892 up to 2022 from inland surfaces and subterranean water bodies from different regions of Greece. For Cladocera, 80 species were recorded (9 families with 35 genera). The most diverse families were Chydoridae (20 genera with 33 species) and Daphniidae (5 genera with 27 species). For copepoda, 134 taxa were recorded, in surface water bodies (12 families with 34 genera), subterranean water bodies (7 families with 27 genera), and parasitic copepods (3 families with 3 genera). The most diverse families in surface waters were Cyclopidae (15 genera with 41 taxa) and Diaptomidae (5 genera with 17 species), while those in subterranean waters were Cyclopidae (11 genera with 35 taxa) and Canthocamptidae (6 genera with 17 taxa). More species are expected to be discovered after sampling understudied regions, especially islands, as well as water bodies such as temporary pools, swamps, ditches, puddles, and the littoral parts of lakes, while molecular studies are needed to clarify various cases of complex taxonomy. Full article
(This article belongs to the Section Freshwater Biodiversity)
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22 pages, 12617 KiB  
Article
Effect of Polytomy on the Parameter Estimation and Goodness of Fit of Phylogenetic Linear Regression Models for Trait Evolution
by Dwueng-Chwuan Jhwueng and Feng-Chi Liu
Diversity 2022, 14(11), 942; https://doi.org/10.3390/d14110942 - 2 Nov 2022
Cited by 2 | Viewed by 4333
Abstract
Phylogenetic regression models for trait evolution incorporate phylogenetic trees for the analysis of comparative data, in order to study trait relationships among a group of related species. However, as such trees are estimated, it is unlikely that there will be no errors when [...] Read more.
Phylogenetic regression models for trait evolution incorporate phylogenetic trees for the analysis of comparative data, in order to study trait relationships among a group of related species. However, as such trees are estimated, it is unlikely that there will be no errors when describing the relationships among species. In particular, for polytomy trees, where the relationships within a particular clade of species are more/less certainly determined (hard/soft polytomy, respectively), results of comparative analyses obtained from models based on those phylogenetic trees may also be affected. In this study, through extensive simulations, the performances of several popular Gaussian process-based regression models (Brownian motion, BM; Ornstein–Uhlenbeck process, OU; early burst, EB), as well as branch-stretching models (Pagel’s λ,δ,κ), were evaluated by assessing their fit and parameter estimation performance when soft polytomies are presented on either the root or a clade with insufficient phylogenetic information. Comparisons of the models are conducted by either assessing the accuracy of the estimator of regression and model parameters, or using a measure of fit (AIC, r2, and mean square error). It is found that, although polytomy does not significantly impact the fit and parameter estimate within a specified model, distinguishable differences and effects may be observed among trees and models. In particular, Pagel λ model and the OU model yield more accurate estimates and provide better fitting effects than the other models (BM, EB, δ, κ). While correcting phylogeny is an essential step prior to analysis, users may also consider using more appropriate models when encountering the polytomy issue. Full article
(This article belongs to the Special Issue Modeling the Ecology and Evolution of Biodiversity)
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18 pages, 3681 KiB  
Article
New Deep-Sea Molluscan Records from Mallorca Channel Seamounts (North-Western Mediterranean)
by Elena Marco-Herrero, Montserrat Ramón, Sergio Ramírez-Amaro, Olga Sánchez-Guillamón, Francesc Ordines, Carmina López-Rodríguez, María Teresa Farriols, Juan Tomás Vázquez and Enric Massutí
Diversity 2022, 14(11), 928; https://doi.org/10.3390/d14110928 - 29 Oct 2022
Cited by 2 | Viewed by 3619
Abstract
Seamounts are globally important and essential ecosystems for supporting and maintaining marine biodiversity. In the Mallorca Channel, three prominent seamounts are present: Ausias March, Ses Olives and Emile Baudot. Currently, this area is being evaluated for inclusion in the Natura 2000 network. For [...] Read more.
Seamounts are globally important and essential ecosystems for supporting and maintaining marine biodiversity. In the Mallorca Channel, three prominent seamounts are present: Ausias March, Ses Olives and Emile Baudot. Currently, this area is being evaluated for inclusion in the Natura 2000 network. For this objective three surveys were conducted in the seamounts of the Mallorca Channel during July 2018 and July 2020. Samples of macro-invertebrates obtained in the deep sea revealed a rich fauna of Mollusca (68 species belonging to 40 families). New Mollusca occurrences included: four species of Gastropoda: Colus jeffreysianus, Cantrainea peloritana, Fusiturris similis, Gymnobela abyssorum, and seven species of Bivalvia: Pododesmus squama, Allogramma formosa, Asperarca nodulosa, Cetomya neaeroides, Spondylus gussonii, Haliris granulata and Policordia gemma. Where possible, the identification of these species was confirmed using the DNA barcoding method (sequencing of the cytochrome c oxidase subunit I). This study contributes towards filling the gap in knowledge of deep-sea mollusc fauna of the north-western Mediterranean. Full article
(This article belongs to the Special Issue Diversity and Ecology of Marine Benthic Communities)
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20 pages, 4754 KiB  
Article
Osteichthyan Fishes from the uppermost Norian (Triassic) of the Fuchsberg near Seinstedt, Lower Saxony (Germany)
by Hans-Peter Schultze, Gloria Arratia, Norbert Hauschke and Volker Wilde
Diversity 2022, 14(11), 901; https://doi.org/10.3390/d14110901 - 25 Oct 2022
Cited by 2 | Viewed by 3333
Abstract
Fishes from the uppermost Norian Fuchsberg Quarry near Seinstedt are represented by two taxa that we interpret as a teleosteomorph (complete specimens) and actinistian (scales). Seinstedtia parva gen. et sp. nov. is described; although it was proposed as a possible semionotiform, this study [...] Read more.
Fishes from the uppermost Norian Fuchsberg Quarry near Seinstedt are represented by two taxa that we interpret as a teleosteomorph (complete specimens) and actinistian (scales). Seinstedtia parva gen. et sp. nov. is described; although it was proposed as a possible semionotiform, this study reveals that Seinstedtia possesses a combination of teleosteomorph features, for instance: characteristic pholidophoriform-shaped cranial roof; fusion of skull roof bones; three dorso-posterior infraorbitals, including an enlarged infraorbital 3; one suborbital bone; movable premaxilla; and characteristic-shaped preopercle. In parallel, Seinstedtia possesses a head gently curved anteriorly, with lower jaw protruding slightly in front of upper jaw; supraorbital 1 forming most of antero-dorsal margin of circumorbital ring; one supramaxilla; three extrascapulae; cleithrum with short and broad lower arm; and enlarged clavicle. This character combination places Seinstedtia as a teleosteomorph, family incertae sedis. This fish (total length ca. 50 mm) and some pholidophorids (ca. 70 mm or less; Parapholidophorus nybelini and Pholidoctenus serianus) represent the known smallest teleosteomorphs that inhabited Europe during the Norian. The isolated scales are elasmoid of amioid type ornamented with the elongated ridges of actinistians. This diversity of teleosteomorphs and actinistians in Fuchsberg Quarry during the Triassic indicates a connection to a marine environment. Full article
(This article belongs to the Special Issue Evolution and Diversity of Fishes in Deep Time)
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8 pages, 1160 KiB  
Article
Genetic Assessment of Remnant Sub-Populations of Sterlet (Acipenser ruthenus Linnaeus, 1758) in the Upper Danube
by Thomas Friedrich, Dietmar Lieckfeldt and Arne Ludwig
Diversity 2022, 14(10), 893; https://doi.org/10.3390/d14100893 - 21 Oct 2022
Cited by 4 | Viewed by 3250
Abstract
While the potamodromous sterlet was common in the past throughout the Upper Danube in Germany and Austria, it nearly vanished in the second half of the 20th century. Until recently, only one small and isolated reproductive sub-population is known from the German–Austrian border. [...] Read more.
While the potamodromous sterlet was common in the past throughout the Upper Danube in Germany and Austria, it nearly vanished in the second half of the 20th century. Until recently, only one small and isolated reproductive sub-population is known from the German–Austrian border. However, isolated remnants in another section downstream of Vienna, near the Austrian–Slovakian border, were discovered in 2014. An assessment of the population size is one of the most important prerequisites for conservation management. This study aims to assess the population sizes at both sites, using genetic pedigrees and comparison to mark–recapture data. A total of 193 samples collected from these populations between 2011 and 2021 have been investigated. In addition, 59 samples from captive stocks, 38 wild fish from downstream, and 247 genetic profiles from previous studies were used for comparison. Results show close relationships and intermittent reproduction on one site. Estimated populations based upon genetic pedigree are very small, and are consistent with mark–recapture results. Small population sizes of remnant populations have only limited, sporadic reproduction, as well as continual losses to outmigration support conservation actions for sturgeons in the Upper Danube, including the restoration of functional migration corridors. Full article
(This article belongs to the Special Issue Conservation Genetics of Sturgeons)
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19 pages, 393 KiB  
Review
Restoration of Geographically Isolated Wetlands: An Amphibian-Centric Review of Methods and Effectiveness
by Angela K. Burrow and Stacey Lance
Diversity 2022, 14(10), 879; https://doi.org/10.3390/d14100879 - 18 Oct 2022
Cited by 8 | Viewed by 3958
Abstract
Geographically isolated wetlands provide a critical habitat for pond-breeding amphibians, a taxa of broad conservation concern. Global wetland loss and degradation has made restoration essential for amphibian conservation. Restoration goals typically include recovering the wetlands’ physiochemical, hydrological, and ecological functions. However, for pond-breeding [...] Read more.
Geographically isolated wetlands provide a critical habitat for pond-breeding amphibians, a taxa of broad conservation concern. Global wetland loss and degradation has made restoration essential for amphibian conservation. Restoration goals typically include recovering the wetlands’ physiochemical, hydrological, and ecological functions. However, for pond-breeding amphibians, successful restoration should also result in sustained populations, which is difficult to assess and infrequently reported. In this paper, we review the available evidence that restoration of geographically isolated wetlands promotes pond-breeding amphibian occupancy and population persistence. We provide an overview of restoration practices addressing hydrology, vegetation, and ecological processes within these unique environments and across spatial scales. We then summarize the evidence, and discuss the limitations, for evaluating successful restoration within the context of amphibian conservation across these categories. Finally, we provide recommendations for researchers and practitioners to leverage prior successes and establish systematic data collection and dissemination. Moving restoration of wetlands for amphibian conservation forward will require more robust data collection and reporting. Full article
(This article belongs to the Special Issue Amphibian Ecology in Geographically Isolated Wetlands)
16 pages, 4375 KiB  
Article
OTU Delimitation with Earthworm DNA Barcodes: A Comparison of Methods
by Arnaud Goulpeau, Benoit Penel, Marie-Eugénie Maggia, Daniel Fernández Marchán, Dirk Steinke, Mickaël Hedde and Thibaud Decaëns
Diversity 2022, 14(10), 866; https://doi.org/10.3390/d14100866 - 13 Oct 2022
Cited by 22 | Viewed by 3450
Abstract
Although DNA barcodes-based operational taxonomic units (OTUs) are increasingly used in earthworm research, the relative efficiency of the different methods available to delimit them has not yet been tested on a comprehensive dataset. For this study, we used three datasets containing 651, 2304 [...] Read more.
Although DNA barcodes-based operational taxonomic units (OTUs) are increasingly used in earthworm research, the relative efficiency of the different methods available to delimit them has not yet been tested on a comprehensive dataset. For this study, we used three datasets containing 651, 2304 and 4773 COI barcodes of earthworms from French Guiana, respectively, to compare five of these methods: two phylogenetic methods—namely Poisson Tree Processes (PTP) and General Mixed Yule Coalescence (GMYC)—and three distance matrix methods—namely Refined Single Linkage (RESL, used for assigning Barcode Index Numbers in the Barcode of Life Data systems), Automatic Barcode Gap Discovery (ABGD), and Assemble Species by Automatic Partitioning (ASAP). We found that phylogenetic approaches are less suitable for delineating OTUs from DNA barcodes in earthworms, especially for large sets of sequences. The computation times are unreasonable, they often fail to converge, and they also show a strong tendency to oversplit species. Among distance-based methods, RESL also has a clear tendency to oversplitting, while ABGD and ASAP are less prone to mismatches and have short computation times. ASAP requires less a priori knowledge for model parameterisation than AGBD, provides efficient graphical outputs, and has a much lower tendency to generate mismatches. Full article
(This article belongs to the Special Issue Molecular Phylogeny and Evolution of Earthworms)
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15 pages, 15891 KiB  
Article
The First-Named Fossil Ostrich: A Revision of Struthio asiaticus, from the Siwaliks of India
by Eric Buffetaut
Diversity 2022, 14(10), 860; https://doi.org/10.3390/d14100860 - 11 Oct 2022
Viewed by 4222
Abstract
The first fossil ostrich to have been named, by Milne-Edwards in 1869–1871, was Struthio asiaticus, a taxon based on a specimen collected by Colonel Colvin in the Siwaliks of India, consisting of associated postcranial elements (vertebrae, forelimb elements, a fragmentary tarsometatarsus and [...] Read more.
The first fossil ostrich to have been named, by Milne-Edwards in 1869–1871, was Struthio asiaticus, a taxon based on a specimen collected by Colonel Colvin in the Siwaliks of India, consisting of associated postcranial elements (vertebrae, forelimb elements, a fragmentary tarsometatarsus and first phalanx of the third toe). Although it was described as least twice in some detail in the 19th century, the specimen has since then been interpreted in conflicting ways. A revision of the type material and its history shows that it came in all likelihood from the Siwaliks of present-day India, not Pakistan. The exact locality is unknown and the stratigraphic position of the specimen is uncertain (the frequent attribution to the Dhok Pathan Formation is not based on solid evidence). Contrary to what has sometimes been claimed, Struthio asiaticus was neither a small nor an especially large ostrich. It was apparently comparable in size with the modern S. camelus, but had slightly more robust cervical vertebrae and carpal bones. It seems to have been relatively short-toed. Because of the incompleteness of the material and uncertainties about its geological age, it is difficult to assess the place of Struthio asiaticus in the evolutionary history of the ostriches. Reports of Struthio asiaticus from Africa and north-eastern Asia are based on misinterpretations and should be discarded. Full article
(This article belongs to the Section Phylogeny and Evolution)
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