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Applied Biosciences

Applied Biosciences is an international, peer-reviewed, open access journal on all aspects of applied biosciences published quarterly online by MDPI.

All Articles (156)

Urban areas and suburbs are facing many environmental problems, one of which is the increasing pollution due to the accumulation of cellulosic waste. This article presents a laboratory study on the microbial biodegradation processes of paper as a cellulosic substrate under anaerobic and mesophilic cultivation conditions. A bacterial consortium with cellulose-degrading activity, as well as 4 individual strains originating from a methanogenic anaerobic bioreactor (BRA), was isolated, identified, and characterized. The results demonstrated that the consortium degraded 57.14% of the cellulose matrix within 20 days. Among the individual colonies, colonies 1 and 2 (identified as Clostridium tertium and Agromyces rhizospherae) exhibited lower activities (35.37% and 34.79%, respectively), while colony 3 (Clostridium paraputrificum) displayed the highest activity (83.74%). The mixture of all four colonies achieved lower degradation (21.22%). The performed metagenomic analysis of the microbial consortium revealed a wide variety of different bacterial genera, among which Clostridium, Bacteroides, and Ruminiclostridium dominate, and the species Bacteroides oleiciplenus, Clostridium butyricum, and Ruminiclostridium papyrosolvens. Scanning electron microscopy visualized the adhesion and morphological features of the degrading microbial population. Additional experiments on the development of a laboratory model for the anaerobic biodegradation of cellulose were carried out in BRAs by using different working volumes. A maximal level of cellulose decomposition was achieved in the BRA with a working volume of 1 L, reaching 71.0% cellulose decomposition on day 20. Long-term storage studies confirmed the survival and well-preserved activity of the consortium and individual isolates, demonstrating their potential for the development of bioconversion technologies.

8 December 2025

Cellulolytic activity of isolated bacterial consortium from BRA incubated at anaerobic conditions on PCS agar by Gram’s iodine test: (a) volume of bacterial inoculum from BRA—1 (15 µL), 2 (20 µL), and 3 (25 µL) (37 °C, 48 h); (b) zone of cellulolytic activity of bacterial inoculum from BRA (25 µL inoculum, 37 °C, 72 h).

The conversion of livestock manure and peat into value-added fertilizers provides an environmentally sustainable approach to nutrient recycling and waste management. In this study, organic fertilizers were formulated from poultry, pig, and cattle manure mixed with peat and wood ash, with or without inoculation of the phosphate-solubilizing bacterium Priestia megaterium. Their efficiency was evaluated through plant growth and soil microbiological experiments involving conifer seedlings, herbaceous crops, and ornamental plants. Germination and growth trials with Norway spruce (Picea abies) and Scots pine (Pinus sylvestris) revealed clear species-specific responses: spruce seedlings performed best in substrates containing poultry or cattle manure, while pine showed enhanced growth with pig manure combined with bacterial inoculant. In pansies (Viola × wittrockiana), growth responses varied by cultivar; cattle manure enriched with bacteria increased leaf projection area, whereas poultry manure markedly suppressed growth. For cucumbers, basil, barley, radish, and garden beans, yields were lower than with mineral fertilizers, yet bacterial inoculation significantly influenced soil microbial activity by modifying respiration rates and hydrolytic enzyme intensity in plant- and manure-specific ways. The results demonstrate that microbial supplementation can alter soil biological processes and nutrient turnover, though its effects on plant productivity remain inconsistent. Further research is required to assess long-term performance under field conditions, as practical application will depend on achieving stable and reproducible results.

5 December 2025

Experimental workflow illustrating the preparation of manure–peat–ash fertilizers, plant cultivation trials, and soil microbiological assessments.

Background: To investigate the performance of radiologists in characterizing and diagnosing hepatic lesions with and without the assistance of deep learning-based artificial intelligence (AI). Methods: This retrospective study included 83 nodules/masses from 69 patients who underwent dynamic contrast-enhanced CT of the liver. Image assessments were conducted by 20 radiologists. grouped according to their level of experience (10 senior and 10 junior). Each radiologist determined the probability of eight characteristics based on enhancement patterns and the diagnosis with and without AI attached to the SYNAPSE SAI viewer (FUJIFILM Corporation, Minato-ku, Japan). The reference standard for comparison was established as follows: final diagnoses were based on pathology for 39 lesions and expert imaging consensus for the remainder, while image characteristics for all lesions were determined by expert imaging consensus. Areas under the receiver operating characteristic curves (AUCs) were analyzed using the multireader multicase method. Results: Using AI significantly improved the overall AUCs for both the characterization and the diagnosis of liver lesions. Improvement was suggested for specific items, including the characterization of enhancement, nonperipheral washout, and delayed enhancement, and the diagnosis of hepatocellular carcinoma. The utilization of AI system also suggested potential improvements in the AUCs for image characterization in both the senior and junior groups. Conclusions: Using AI improved the radiologists’ performance in characterizing and diagnosing hepatic lesions. In terms of their capacity to assess imaging characteristics, improvements were observed regardless of their level of experience.

3 December 2025

Flowchart of patient enrollment process.

BPM1, a representative of the plant MATH-BTB protein family comprises three conserved domains—MATH, BTB, and BACK—that facilitate diverse protein–protein interactions central to developmental processes. However, recombinant production of BPM1 and its variants in Escherichia coli are frequently constrained by low solubility and poor stability. In this study, we systematically optimized E. coli-based expression strategies to enable soluble production and purification of domain-truncated BPM1 variants (BPM1ΔBTB, BPM1ΔMATH, and BPM1ΔBACK). A combinatorial approach was employed: varying induction temperature, medium composition, affinity tag selection, bacterial strain, and solubility-enhancing supplements. Expression outcomes were highly dependent on specific parameter combinations. Notably, BPM1ΔBTB—previously the most recalcitrant variant—showed a marked solubility improvement when expressed as a GST fusion in E. coli Rosetta (DE3) cultivated in TB medium supplemented with MgCl2. By contrast, BPM1ΔMATH and BPM1ΔBACK displayed enhanced solubility when expressed in BL21 (DE3) cultivated in 4 × YT medium instead Rosetta (DE3) in 2 × YT medium. Constructs with N-terminal His-tags consistently resulted in poor solubility or failed expression. These results establish a framework for producing otherwise insoluble BPM1 variants and highlight a broadly applicable strategy for handling unstable proteins through tailored E. coli expression systems.

1 December 2025

A schematic representation of the BPM1 domain-deletion variants designated as BPM1ΔMATH if the MATH domain was missing, BPM1ΔBTB if the BTB domain was missing and BPM1ΔBACK if the BACK domain was missing. The expected tagged-deletion variants’ size in kDa was calculated using ProtParam [42] and UniProt [43]. The MATH domain consists of 133 amino acids, BTB has 120 amino acids and the BACK domain 63 amino acids. Figure created with BioRender [44].

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Appl. Biosci. - ISSN 2813-0464