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Applied Biosciences

Applied Biosciences is an international, peer-reviewed, open access journal on all aspects of applied biosciences published quarterly online by MDPI.

All Articles (164)

The Allium cepa Assay as a Versatile Tool for Genotoxicity and Cytotoxicity: Methods, Applications, and Comparative Insight

  • Olivia Torres-Bugarín,
  • Isaac Gómez-Ferreyra and
  • María Evarista Arellano-García
  • + 7 authors

Background: The Allium cepa test is a widely used, cost-effective, and versatile model for assessing cytogenotoxicity. Cytotoxicity is determined through changes in root growth and the mitotic index, while genotoxicity is identified through chromosomal aberrations such as breaks, bridges, and micronuclei. Objective: To synthesize the methodological principles, applications, and interpretation of the assay’s endpoints, with emphasis on environmental monitoring, nanotoxicology, and the evaluation of emerging materials. Methods: An exploratory analytical approach was applied to identify and compare studies employing the Allium cepa assay across different contexts. The literature, selected from scientific databases, was organized to highlight methodological diversity and biomarker performance. Conclusions: Compared with other models, Allium cepa stands out for its simplicity, the availability of multiple cytogenotoxic markers, and its minimal ethical constraints, making it especially suitable for research in low-infrastructure settings. Future studies should work toward the international standardization of methodologies, the integration of this model with molecular and omics-based approaches, and its incorporation into predictive frameworks for environmental and human health risk assessment. In an increasingly complex toxicological landscape, Allium cepa emerges as a pivotal tool for enhancing toxicological surveillance and safeguarding biological systems.

2 February 2026

Sample processing. (1) Specimen selection, (2) root length measurement, (3) working groups, (4,5) sample processing (hydrochloric acid, aceto-orcine + acetic acid [45%]), (6) squash, and (7) microscopic analysis. Created in BioRender. Delgado, D. (2025) https://BioRender.com/6m8c9ch (accessed on 9 January 2026).

Escherichia coli is a major pathogen responsible for urinary tract infections, septicemia, and other clinically relevant conditions, with increasing multidrug resistance (MDR) limiting available treatment options. In this context, bacteriophages represent a valuable resource for exploring novel antimicrobial and biotechnological tools. Here, we report the isolation and genomic characterization of BorMax, a novel lytic phage infecting multiple MDR E. coli. Transmission electron microscopy revealed a tailed morphology consistent with Dhillonvirus. Whole genome sequencing and de novo assembly showed a linear double-stranded DNA genome of 45,502 bp, encoding 70 predicted coding sequences (CDSs) and lacking tRNAs. Bioinformatic analyses confirmed the absence of lysogeny-associated genes, as well as virulence and antimicrobial resistance determinants. Comparative genomics using classified BorMax within the genus Dhillonvirus as a new species, sharing <77% intergenomic similarity with known members. Notably, predictions using PaCRISPR and AcRanker identified four CDSs with strong anti-CRISPR (Acr) potential, representing previously undescribed Acr candidates in this group. These genomic features highlight the novelty, safety, and potential biotechnological relevance of BorMax and contribute to the expanding genomic and functional diversity of Dhillonvirus and E. coli-infecting phages.

2 February 2026

Transmission electron micrograph of phage BorMax (A) and lysis plaques of phage BorMax on the lawn of E. coli ATCC 25922 (B).

Beyond Folding: The Dual Life of Hsp60 in Tissue Homeostasis and Pathophysiology

  • Giuseppa D’Amico,
  • Melania Ionelia Gratie and
  • Alessandra Maria Vitale
  • + 2 authors

The heat shock protein 60 (Hsp60) is a highly conserved molecular chaperonin belonging to the chaperone system, a complex network that maintains proteostasis and regulates numerous cellular processes beyond protein folding. Initially described as a mitochondrial protein essential for the folding of newly imported polypeptides, Hsp60 is now recognized as a multifunctional molecule. Its expression, localization, and post-translational modifications dynamically influence cell fate and tissue homeostasis. Alterations in Hsp60 quantity, structure, or distribution underlie a heterogeneous group of disorders known as chaperonopathies, which may occur “by defect,” “by excess,” or “by mistake” (also called “by collaborationism”). Genetic Hsp60’s chaperonopathies are associated with rare neurodegenerative and cardiovascular diseases, whereas acquired forms contribute to widespread conditions, including autoimmune, inflammatory, and malignant pathologies. This review provides a comprehensive overview of Hsp60 biology across human systems, emphasizing its structural plasticity, context-dependent functions, and dual role in health as both a biomarker and a therapeutic target. The emerging paradigm of chaperonotherapy, encompassing positive strategies to restore protective chaperones and negative strategies to inhibit pathogenic ones, highlights the translational potential of targeting Hsp60. Understanding the molecular mechanisms governing its activity will be essential for developing precision medicine approaches aimed at modulating the chaperone system in human disease.

30 January 2026

The figure illustrates the involvement of Hsp60 in the etiopathogenesis of human diseases. Specifically, genetic alterations, inflammation/autoimmunity, and carcinogenesis were chosen as overarching themes under which the main aspects of general pathology—i.e., the study of disease etiopathogenesis—are organized. Selected examples that are described in greater detail in the main text are also shown. In particular, mutations in the HSPD1 gene have been linked to diseases affecting the nervous system (Hypomyelinating Leukodystrophy 4 and Spastic Paraplegia 13) and the cardiovascular system (Dilated Cardiomyopathy). In the context of autoimmune and inflammatory conditions, Hsp60 can act both as an autoantigen, promoting autoantibody production and autoreactivity, and as a chaperokine, triggering inflammation when surface-exposed or secreted. Finally, in carcinogenesis, Hsp60 may function either as a pro-tumorigenic or an anti-tumorigenic factor, depending on the cellular context. Created in BioRender (https://BioRender.com/cnq6d32; accessed on 27 November 2025).
  • Systematic Review
  • Open Access

Probiotics, whether consisting of a single strain or multiple strains, are attracting growing interest in the management of type 2 diabetes mellitus (T2DM). However, their efficacy remains a matter of controversy and requires careful consideration. Accordingly, this meta-analysis aimed to compare the efficacy of single-strain to that of multi-strain probiotics supplementation on glycated haemoglobin (HbA1c) and fasting blood glucose (FBG) levels in adults with T2DM. Nineteen articles published between 2017 and 2024 obtained from 4 databases (Cochrane, Web of Science, Scopus, and PubMed) were included. These interventions, conducted in a total of 1159 participants, lasted from 6 to 24 weeks and were based on clearly identified probiotic formulations, with assessments of HbA1c and FBG. The results showed that, overall, probiotic supplementation had no significant effect on HbA1c (−0.24%; 95% CI [−0.76; 0.27]; p = 0.36), although a trend towards reduction was observed for single-strain formulations (−0.57%; p = 0.05). Regarding FBG, only the multi-strain group showed a significant reduction (−0.76; 95% CI [−1.18; −0.34]; p < 0.001), while the effect of the single-strain formulation was not significant. The comparison between the two formulations (Wald test) showed that there was no significant difference (p ≤ 0.05). However, high heterogeneity (I2 > 75%) and variable strains/doses limit confidence in these findings.

22 January 2026

Flowchart illustrating the process for selecting included studies.

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Appl. Biosci. - ISSN 2813-0464