Rice–crab co-culture systems (RC) represent promising sustainable intensification approaches, yet their nitrogen (N) cycling and optimal fertilization strategies remain poorly characterized. In this study, we compared RC with rice monoculture system (RM) across four N gradients (0, 150, 210, and 270 kg N·hm
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Rice–crab co-culture systems (RC) represent promising sustainable intensification approaches, yet their nitrogen (N) cycling and optimal fertilization strategies remain poorly characterized. In this study, we compared RC with rice monoculture system (RM) across four N gradients (0, 150, 210, and 270 kg N·hm
−2), assessing N dynamics in field water and N distribution in soil. The results showed that field water ammonium nitrogen (NH
4+-N) concentrations increased nonlinearly, showing sharp increases beyond 210 kg N·hm
−2. Notably, crab activity in the RC altered the N transformation and transport processes, leading to a prolonged presence of nitrate nitrogen (NO
3−-N) in field water for two additional days after tillering fertilization compared to RM. This indicates a critical window for potential nitrogen loss risk, rather than enhanced retention, 15 days after basal fertilizer application. Compared to RM, RC exhibited enhanced nitrogen retention capacity, with NO
3−-N concentrations remaining elevated for an additional two days following tillering fertilization, suggesting a potential critical period for nitrogen loss risk. Post-harvest soil analysis revealed contrasting nitrogen distribution patterns: RC showed enhanced NH
4+-N accumulation in surface layers (0–2 cm) with minimal vertical NO
3−-N redistribution, while RM exhibited progressive NO
3−-N increases in subsurface layers (2–10 cm) with increasing fertilizer rates. The 210 kg N·hm
−2 rate proved optimal for the RC, producing a rice yield 12.08% higher than that of RM and sustaining high crab yields, while avoiding the excessive aqueous N levels seen at higher rates. It is important to note that these findings are based on a single-site, single-growing season field experiment conducted in Panjin, Liaoning Province, and thus the general applicability of the optimal nitrogen rate may require further validation across diverse environments. We conclude that a fertilization rate of 210 kg N·hm
−2 is the optimal strategy for RC, effectively balancing productivity and environmental sustainability. This finding provides a clear, quantitative guideline for precise N management in integrated aquaculture systems.
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