Crop Genetics and Breeding—Second Edition

A Special Issue of Plants (ISSN 2223-7747) belonging to the section "Plant Genetics, Genomics and Biotechnology".

Deadline for manuscript submissions: closed (31 July 2026) | Viewed by 1526

Editors

Special Issue Information

Dear Colleagues,

The journal Plants will be publishing a Special Issue titled "Crop Genetics and Breeding—Second Edition". As enduring and thriving global academic disciplines, crop genetics and breeding play crucial roles in agricultural development, contributing to the improvement of crop varieties with desirable traits, such as higher yield and/or quality, resistance to biotic and abiotic stresses, tolerance to environmental stress, adaptability to climate change, enhanced nutritional content, etc. Significant advances have been made in both the theoretical and applied research fields of crop genetics and breeding and in related disciplines, attributing to advancements in genomics, biotechnology, molecular biology, population genetics, multi-omics, bioinformatics, etc., which have opened new interdisciplinary areas of plant genetics and breeding. We welcome the submission of various types of manuscripts, including original research papers, reviews, and methodologies, encompassing but not limited to the following areas:

Genetic Diversity:

  • Genetic diversity is the foundation of crop improvement. It refers to the variety of genetic material within a species.
  • Maintaining and utilizing genetic diversity is essential for developing crops with resilience to changing environmental conditions.

Gene Discovery:

  • Advances in molecular biology and genomics have facilitated the discovery and understanding of specific genes associated with important traits.
  • The identification of the genes responsible for traits such as drought tolerance, disease resistance and nutritional content allows for targeted breeding efforts.

Marker-Assisted Selection (MAS):

  • MAS involves using molecular markers linked to specific genes or traits to aid in traditional breeding.
  • This technique allows for a more precise selection of desired traits and reduces the time needed for conventional breeding.

Genome Editing:

  • Technologies such as CRISPR-Cas9 have revolutionized genetic engineering by enabling the precise modification of specific genes.
  • Genome editing can be used to enhance traits or introduce new traits into crops more rapidly than traditional breeding methods.

Quantitative Genetics:

  • Quantitative genetics involves the study of traits that are controlled by multiple genes, often with a significant environmental influence.
  • Understanding the genetic basis of quantitative traits helps breeders make more informed decisions in selecting plants for breeding programs.

Hybridization and Crossbreeding:

  • Crossbreeding involves mating individuals from different populations to combine desirable traits from each parent.
  • Hybrid varieties often exhibit heterosis or hybrid vigor, resulting in superior performance compared to their parents.

Genetic Modification (GM):

  • Genetic modification involves the introduction of genes from different organisms to confer specific traits.
  • GM crops may have improved resistance to pests, diseases, or environmental stresses.

Phenotypic Selection:

  • Traditional breeding methods often rely on the observation of physical characteristics (phenotypes) to select plants with desired traits.
  • This method has been used for centuries and remains an important part of many breeding programs.

Data-Driven Breeding:

  • With the advent of big data and bioinformatics, there is an increasing emphasis on data-driven approaches in crop breeding.
  • Analyzing large datasets can help identify patterns, correlations, and markers associated with desirable traits.

Prof. Dr. Hai Du
Prof. Dr. Zhe Liang
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 250 words) can be sent to the Editorial Office for assessment.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-anonymized peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Plants is an international peer-reviewed open access semimonthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • crops
  • population
  • QTL
  • sequencing
  • genome
  • SNP
  • molecular markers
  • genome editing
  • phenotypes
  • omics
  • polyploidy
  • evolution

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Published Papers (2 papers)

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Research

16 pages, 9978 KB  
Article
Origin and Evolution of Ammonium Transporters (AMTs) in Plants and Systematic Expression Studies in Brassica napus
by Mingming Chen, Li Zhang, Yixuan Zhang, Xingzhi Qian, Qingyang Yang, Zhuo Chen, Huiyan Zhao, Nengwen Yin, Ti Zhang, Cunmin Qu, Jing Wen, Hai Du and Daixiang Xu
Plants 2026, 15(15), 2334; https://doi.org/10.3390/plants15152334 - 29 Jul 2026
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Abstract
Brassica napus L. is one of the most important oil crops in the world, and improving its nitrogen efficiency is a key strategy for enhancing low-nitrogen tolerance and increasing yield. Ammonium transporters (AMTs) play critical roles in NH4+ transport in plants [...] Read more.
Brassica napus L. is one of the most important oil crops in the world, and improving its nitrogen efficiency is a key strategy for enhancing low-nitrogen tolerance and increasing yield. Ammonium transporters (AMTs) play critical roles in NH4+ transport in plants and significantly influence nitrogen use efficiency and yield. To identify promising candidate AMT genes for rapeseed improvement, this study systematically analyzed the evolution and expression of AMT genes across the Archaeplastida plants, especially in Brassica species of the U’s triangle. A total of 368 AMT genes were identified from 35 Archaeplastida species, including 180 AMT1 and 188 AMT2 homologs. Gene duplication analysis revealed that small-scale duplication (SSD) was the primary mechanism driving gene expansion from aquatic algae to angiosperms in both AMT1 and AMT2 families, which were under the influence of purifying selection. In the U’s triangle, allopolyploidization, particularly whole-genome duplication (WGD), was the primary mechanism for AMT expansion, accompanied by gene loss. Expression profiling indicated that most BnAMTs respond to hormonal and low-nitrogen signals and exhibit tissue-specific expression patterns. Notably, four candidate genes (BnAMT1;5, BnAMT1;12, BnAMT2;2, BnAMT2;4) exhibited high expression levels and responsiveness to low-nitrogen stress. Haplotype analysis further linked specific polymorphisms in BnAMT1;5 and BnAMT2;2 to variations in plant height and yield. Collectively, these findings elucidate the evolutionary processes and regulatory mechanisms of AMTs, laying a foundation for enhancing nitrogen utilization efficiency in B. napus and other crops. Full article
(This article belongs to the Special Issue Crop Genetics and Breeding—Second Edition)
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21 pages, 3001 KB  
Article
ZmNAC17 Integrates Transcriptional and Protein Interaction Networks to Regulate Maize Stalk Architecture
by Tianyu Yang, Ming Wang, Haiyan Zhang, Qiuhua Li, De Xue, Jinjie Guo, Fuchao Jiao and Jingtang Chen
Plants 2026, 15(12), 1814; https://doi.org/10.3390/plants15121814 - 12 Jun 2026
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Abstract
Maize plant height and stalk mechanical strength are critical traits that influence planting density, yield, and lodging resistance. Although numerous dwarf mutants have been characterized in maize, most cannot be directly utilized in breeding programs due to associated developmental and reproductive deficiencies. In [...] Read more.
Maize plant height and stalk mechanical strength are critical traits that influence planting density, yield, and lodging resistance. Although numerous dwarf mutants have been characterized in maize, most cannot be directly utilized in breeding programs due to associated developmental and reproductive deficiencies. In a previous study, we demonstrated that ZmNAC17 regulates mesocotyl elongation by mediating auxin and reactive oxygen species (ROS) biosynthetic pathways. Here, we characterize the role of ZmNAC17 in maize stalk development using both zmnac17 mutants and ZmNAC17-overexpressing (OE) lines. Plant height, stalk diameter, and internode length were reduced in both the zmnac17-1 EMS mutant and the zmnac17-3 CRISPR mutant. Internode cell length and cell area were decreased, whereas cell number was increased in zmnac17-1. Cellulose and lignin contents were elevated in zmnac17-1. Stalk bending force was diminished in zmnac17-3 but enhanced in the OE lines. The ratio of syringyl to guaiacyl (S/G), a key lignin monomer composition, was increased in zmnac17-3 while reduced in the OE lines. ZmNAC17 functions as a transcription factor, with its downstream targets implicated in phytohormone biosynthesis, phytohormone signaling, and lignin biosynthesis. CUT&Tag binding profile, EMSA, and dual-luciferase reporter assay demonstrate that ZmNAC17 promotes the expression of caffeoyl-CoA O-methyltransferase (CCoAOMT). IP-MS, Co-IP, and GST pull-down assays reveal that ZmNAC17 interacts with Beta glucosidase aggregating factor1 (BGAF1). Collectively, our findings indicate that ZmNAC17 regulates maize stalk development through transcriptional activation and protein–protein interactions, thereby providing new genetic resources for modifying plant architecture and mechanical strength in maize. Full article
(This article belongs to the Special Issue Crop Genetics and Breeding—Second Edition)
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