Journal Description
Biology
Biology
is an international, peer-reviewed, open access journal of biological sciences published semimonthly online by MDPI. The Spanish Society for Nitrogen Fixation (SEFIN) and Federation of European Laboratory Animal Science Associations (FELASA) are affiliated with Biology and their members receive discounts on the article processing charges.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubMed, PMC, PubAg, CAPlus / SciFinder, and other databases.
- Journal Rank: JCR - Q1 (Biology) / CiteScore - Q1 (General Agricultural and Biological Sciences)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 16.8 days after submission; acceptance to publication is undertaken in 2.9 days (median values for papers published in this journal in the second half of 2025).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
Impact Factor:
3.5 (2024);
5-Year Impact Factor:
4.0 (2024)
Latest Articles
Ecological Interactions on Sandy Beach Ecosystems: A Global Synthesis of Mole Crabs and New Insights into Emerita brasiliensis and Emerita rathbunae (Crustacea, Decapoda, Anomura, Hippidae)
Biology 2026, 15(4), 311; https://doi.org/10.3390/biology15040311 - 10 Feb 2026
Abstract
Sandy beaches are dynamic intertidal ecosystems where ecological interactions play a critical yet often overlooked role in shaping community structure and population dynamics. This study presents a global synthesis of ecological interactions involving mole crabs of the genus Emerita (Crustacea: Decapoda: Hippidae), complemented
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Sandy beaches are dynamic intertidal ecosystems where ecological interactions play a critical yet often overlooked role in shaping community structure and population dynamics. This study presents a global synthesis of ecological interactions involving mole crabs of the genus Emerita (Crustacea: Decapoda: Hippidae), complemented by new field and laboratory findings. Through a literature review and targeted sampling, we documented multiple interaction types, including predation, parasitism, epibiosis, competition, and symbiosis, highlighting their ecological and potential evolutionary implications. Predation and parasitism were the most frequently reported interactions worldwide. Our new empirical observations revealed, for the first time, the association of Eucheilota (Hydrozoa) and Maritrema sp. (Digenea) with E. rathbunae, as well as annual infection patterns by Profilicollis altmani (Acanthocephala) and algal epibiosis in E. brasiliensis. These interactions influence key biological processes such as burrowing, reproduction, and survival, ultimately affecting species distribution and population structure. Overall, our findings reinforce the central role of ecological interactions in the functioning and conservation of sandy beach ecosystems, particularly under growing anthropogenic pressures.
Full article
(This article belongs to the Special Issue Biodiversity, Conservation, and Application of Crustaceans)
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Open AccessReview
Stress-Driven Tolerance and Persistence of Listeria monocytogenes Across the Farm-to-Fork Continuum
by
Ayman Elbehiry, Eman Marzouk and Adil Abalkhail
Biology 2026, 15(4), 310; https://doi.org/10.3390/biology15040310 (registering DOI) - 10 Feb 2026
Abstract
Food systems expose bacteria to repeated nonlethal stresses during primary production, processing, storage, and sanitation. Depending on the type, intensity, and sequence of exposure, these stresses may weaken cells, act synergistically to promote inactivation, or fail to eliminate contamination. Instead, they can alter
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Food systems expose bacteria to repeated nonlethal stresses during primary production, processing, storage, and sanitation. Depending on the type, intensity, and sequence of exposure, these stresses may weaken cells, act synergistically to promote inactivation, or fail to eliminate contamination. Instead, they can alter bacterial physiology in ways that affect survival, recovery, detection, and responses to control measures. This review examines how stress history contributes to persistent food safety challenges. Listeria monocytogenes is used as a central biological model, with relevant comparisons to other foodborne pathogens. Evidence from food-processing and environmental studies shows that repeated sublethal stress can shift bacterial populations toward stress-hardened states. Here, “stress-hardened” refers to reversible physiological changes and the survival of more tolerant cells, not permanent genetic adaptation. These states include sublethal injury, delayed growth, viable but nonculturable cells, biofilm formation, and increased tolerance to later stresses. These outcomes contribute to, but do not fully explain, the persistence of L. monocytogenes in food environments; intrinsic traits such as psychrotrophic growth and interactions with endogenous microflora also play important roles. These factors help explain repeated recovery of L. monocytogenes after sanitation and the underestimation of viable cells by routine culture-based methods, which do not reliably indicate whether pre-stressed cells retain the potential to cause foodborne illness. Many monitoring and validation approaches rely on unstressed laboratory cultures and fixed enrichment protocols. These conditions do not reflect the physiological states encountered in real food systems. As a result, negative test results may reflect limited recovery rather than true absence, and control performance may be overestimated when stress-conditioned populations are not considered. Across the farm-to-fork continuum, stress responses, persistence mechanisms, and detection limitations are closely linked, indicating that stress history should be considered a core element of hazard characterization, monitoring, and control validation. Incorporating stress biology into food safety assessment can improve the realism of verification strategies when combined with risk characterization that considers infectious dose and host susceptibility, and support control strategies under real-world processing and environmental conditions.
Full article
(This article belongs to the Special Issue Microbial Contamination and Food Safety (Volume II))
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Open AccessSystematic Review
The Prevalence of Sleep Disorders in Populations with Glymphatic Dysfunction: A Systematic Review and Meta-Analysis
by
Zaw Myo Hein, Che Mohd Nasril Che Mohd Nassir, Hafizah Abdul Hamid, Muhammad Farris Iman Leong Abdullah and Nisha Shantakumari
Biology 2026, 15(4), 309; https://doi.org/10.3390/biology15040309 - 10 Feb 2026
Abstract
The glymphatic system supports metabolic waste clearance during sleep and is essential for brain homeostasis. Disruption of this system has been linked to sleep disorders, yet the overall prevalence of sleep disorders in populations showing impaired glymphatic-related function remains unclear. This systematic review
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The glymphatic system supports metabolic waste clearance during sleep and is essential for brain homeostasis. Disruption of this system has been linked to sleep disorders, yet the overall prevalence of sleep disorders in populations showing impaired glymphatic-related function remains unclear. This systematic review and meta-analysis evaluated the prevalence of sleep disorders in human cohorts with structural, functional, or biochemical imaging markers of impaired glymphatic activity. Following PRISMA guidelines, major databases were searched up to August 2025. Eligible observational studies reported sleep disorder prevalence in populations characterized by enlarged perivascular spaces, white matter hyperintensities, DTI-ALPS (DTI-ALPS: Diffusion tensor image analysis along perivascular space) alterations, ultrafast fMRI (fMRI: functional magnetic resonance) indices, or CSF/PET (CSF: cerebrospinal fluid; PET: positron emission tomography) clearance deficits. Random-effects models generated pooled estimates, and heterogeneity, publication bias, and moderators were examined using I2 statistics, Egger’s test, trim-and-fill, and meta-regression. Nineteen studies (≈4500 participants) met the inclusion criteria. The pooled prevalence of sleep disorders in populations with impaired glymphatic-related function was 44.9% (95% CI: 34.9–55.3%), with substantial heterogeneity (I2 ≈ 95%). Meta-regression identified older age and case–control design as significant contributors, while imaging modality, sex distribution, and sample size were not. Publication bias was minimal. Sleep disorders are common among individuals with impaired glymphatic-related markers, reflecting co-occurrence rather than causality. Standardized longitudinal studies are needed to clarify mechanisms and clinical relevance.
Full article
(This article belongs to the Special Issue The Neurobiology of Sleep and Circadian Clock)
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Open AccessArticle
CHMP7/ESCRT-III Is Localized at the Nuclear Envelope of Cortical Neurons and Required for Expression of Activity-Regulated Genes
by
Paola Chietera, Heidrun Berger, Nico Wahl, Mujahid Ali and Galina Apostolova
Biology 2026, 15(4), 308; https://doi.org/10.3390/biology15040308 - 10 Feb 2026
Abstract
The epigenome and nuclear architectural mechanisms that regulate neuronal activity-induced transcriptional responses in cortical neurons remain incompletely understood. Previously, we have shown that the chromatin organizer SATB2 and the inner nuclear membrane protein LEMD2 form a chromatin tether at the nuclear lamina, and
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The epigenome and nuclear architectural mechanisms that regulate neuronal activity-induced transcriptional responses in cortical neurons remain incompletely understood. Previously, we have shown that the chromatin organizer SATB2 and the inner nuclear membrane protein LEMD2 form a chromatin tether at the nuclear lamina, and that activity-induced transcription is impaired in both Satb2 and Lemd2 loss-of-function models. Interaction of SATB2 and LEMD2 with subunits of the ESCRT-III complex indicates that the ESCRT-III complex could serve as an activity-dependent, dynamic component of this tether. Here, we study the activity-dependent subcellular localization and function of the ESCRT-III components CHMP7 and CHMP4B in primary cortical neurons. We find that increased neuronal activity correlates with the accumulation of co-localized CHMP7 and CHMP4B foci at the nuclear envelope. shRNA-mediated Chmp7 knockdown causes a reduction in the expression of activity-regulated genes and genes with highly specialized functions in synaptic organization and trans-synaptic signaling. Furthermore, the observed similarity in the global transcriptome responses in Satb2, Lemd2, and Chmp7 loss-of-function models points toward a previously unrecognized role of the SATB2–LEMD2–CHMP7 tether in linking chromatin architecture and nuclear envelope plasticity to activity-dependent gene regulation.
Full article
(This article belongs to the Section Neuroscience)
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Open AccessReview
The Oncogenic Role of Long Non-Coding RNA NEAT1 in Head and Neck Squamous Cell Carcinoma: From Molecular Mechanisms to Clinical Implications
by
Yuanxin Shi, Bin Chen and Guohui Bai
Biology 2026, 15(4), 307; https://doi.org/10.3390/biology15040307 - 10 Feb 2026
Abstract
Head and neck squamous cell carcinoma (HNSCC) is an aggressive malignancy with poor patient outcomes. The long non-coding RNA NEAT1 (lncRNA NEAT1) has emerged as a critical driver of HNSCC pathogenesis. This review synthesizes current knowledge on lncRNA NEAT1’s aberrant expression,
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Head and neck squamous cell carcinoma (HNSCC) is an aggressive malignancy with poor patient outcomes. The long non-coding RNA NEAT1 (lncRNA NEAT1) has emerged as a critical driver of HNSCC pathogenesis. This review synthesizes current knowledge on lncRNA NEAT1’s aberrant expression, molecular mechanisms, and functional roles in HNSCC. LncRNA NEAT1 is significantly upregulated in tumors and promotes progression by acting as a competing endogenous RNA (ceRNA) for multiple miRNAs, such as miR-125b-5p, miR-204, and miR-34a-5p, thereby regulating downstream targets including SLC1A5, ZEB1, and components of the Wnt/β-catenin pathway. These interactions drive key oncogenic processes, including proliferation, metastasis, epithelial–mesenchymal transition, therapy resistance, and cell death inhibition. Clinically, high lncRNA NEAT1 expression correlates with advanced T stage, lymph node metastasis, and reduced survival, underscoring its potential as a diagnostic and prognostic biomarker. Therapeutically, emerging approaches such as nanoparticle-mediated delivery of siRNA/shRNA offer a promising strategy to target lncRNA NEAT1, potentially synergizing with existing immunotherapies. Although clinical translation remains challenging, lncRNA NEAT1 represents a highly promising biological target for future precision oncology in HNSCC.
Full article
(This article belongs to the Special Issue Head and Neck Cancer: Current Advances and Future Perspectives)
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Open AccessArticle
Heavy Metal Pollution and Assessment of the Bioaccumulation Potential of Earthworms from the Soil of Punjab, Pakistan
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Ting Shen, Javaria Altaf, Ghulam Abbas, Muhammad Naeem, Maryam Riasat, Aqsa Sarwar, Rabiya Hussain, Aqsa Faisal, Areej Fatima, Nawaz Haider Bashir and Huanhuan Chen
Biology 2026, 15(4), 306; https://doi.org/10.3390/biology15040306 - 9 Feb 2026
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Earthworms are widely used as biological indicators of soil contamination and are often referred to as the ‘intestine of the soil’; however, their effectiveness can vary across regions and environmental conditions. The performance of earthworms as indicators of soil pollution may vary among
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Earthworms are widely used as biological indicators of soil contamination and are often referred to as the ‘intestine of the soil’; however, their effectiveness can vary across regions and environmental conditions. The performance of earthworms as indicators of soil pollution may vary among regions, and there is a need to assess their reliability under specific environmental conditions. So, in this study, soil and earthworm samples were collected from 19 locations across Punjab, Pakistan, to assess heavy metal pollution and bioaccumulation using geoaccumulation indices (Igeo) and bioaccumulation factors (BAF). Soil and earthworm tissues were digested and analyzed for heavy metals such as Sr, Zn, Ca, Cu, Fe, Mn, Co, Cr, Pb, Cd and Ni using ICP-MS. According to Igeo, cadmium frequently classified soils as strongly to extremely polluted, with values up to 4.5 in Bahawalnagar, whereas most other metals fell within the unpolluted to moderately polluted classes. Earthworms showed clear bioaccumulation (BAF > 1) for several essential or poorly regulated elements, particularly Ca, Mn, Cu and Sr; the maximum BAF for Ca reached 8.18 in Faisalabad. In contrast, group-1 carcinogenic metals (Pb, Cd and Cr) generally did not exhibit strong bioaccumulation. Relationships between BAF and soil metal concentrations or abiotic properties (moisture, pH, electrical conductivity, total dissolved and suspended solids) were generally weak (R2 typically ≤ 0.32), indicating that these factors explain only a modest fraction of the variation in metal uptake. Overall, the results highlight cadmium as the primary soil contamination risk in the surveyed areas. Because bioaccumulation showed weak relationships with soil metal concentrations and physicochemical parameters, earthworms in this study demonstrated limited effectiveness as bioindicators of toxic heavy metal accumulation. The limited internal accumulation of highly toxic metals suggests possible physiological regulation or tolerance, although the long-term ecological implications require further investigation. Further controlled studies are necessary to better evaluate their ecological role and potential applications in soil remediation, waste management, and vermicompost production.
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Open AccessArticle
Hesperidin Enhances Doxorubicin Efficacy by Modulating Apoptosis- and Migration-Associated Processes in Human Retinoblastoma Cells
by
Aydın Maçin, Erkan Duman, İlhan Özdemir, Şamil Öztürk and Mehmet Cudi Tuncer
Biology 2026, 15(4), 305; https://doi.org/10.3390/biology15040305 - 9 Feb 2026
Abstract
This study evaluated the therapeutic potential and underlying molecular mechanisms of the citrus flavonoid Hes in combination with the chemotherapeutic agent DOX in human RB cells. Cells were treated with Hes alone or in combination with DOX for 24 and 48 h. Hes
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This study evaluated the therapeutic potential and underlying molecular mechanisms of the citrus flavonoid Hes in combination with the chemotherapeutic agent DOX in human RB cells. Cells were treated with Hes alone or in combination with DOX for 24 and 48 h. Hes significantly inhibited cell proliferation and migration and promoted apoptotic cell death, while enhancing the cytotoxic response to DOX under in vitro conditions. Molecular analyses demonstrated that combination treatment markedly modulated ECM-associated markers, including the downregulation of matrix metalloproteinases MMP-2 and MMP-9 and ACTA2 (α-smooth muscle actin, α-SMA), along with the upregulation of tissue inhibitors of metalloproteinases TIMP-1 (tissue inhibitor of metalloproteinases) and TIMP-2. In parallel, the expression of apoptosis-related genes was altered, as evidenced by the upregulation of the B-cell lymphoma 2 (Bcl-2)-associated X protein (Bax) and Caspase-3 and the downregulation of Bcl-2. Overall, these findings indicate that Hes enhances DOX efficacy by simultaneously engaging apoptotic and migration-associated molecular processes, supporting its potential role as a preclinical chemosensitizing agent that warrants further investigation in advanced experimental models.
Full article
(This article belongs to the Section Cancer Biology)
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Open AccessArticle
Effect of Quinoa Germ Meal as a Replacement for Fish Meal in Diets on Intestinal Health of Juvenile Turbot (Scophthalmus maximus)
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Jingkun Yang, Zhibin Sun, Cong Ma, Xinan Wang, Zhifeng Liu, Zhihui Huang, Yunyi Gao, Yuanyuan Li, Yilin Wang and Aijun Ma
Biology 2026, 15(4), 304; https://doi.org/10.3390/biology15040304 - 9 Feb 2026
Abstract
Quinoa germ meal (QGM) is a protein-rich by-product with potential as an alternative protein source; however, its effects on growth performance and intestinal health in marine carnivorous fish remain unclear. Juvenile turbot (Scophthalmus maximus) were fed five isonitrogenous (45.6% crude protein)
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Quinoa germ meal (QGM) is a protein-rich by-product with potential as an alternative protein source; however, its effects on growth performance and intestinal health in marine carnivorous fish remain unclear. Juvenile turbot (Scophthalmus maximus) were fed five isonitrogenous (45.6% crude protein) and isolipidic (9.8% crude lipid) diets for 8 weeks: a fishmeal-based control diet (C) and four experimental diets in which fishmeal was replaced with QGM at 10% (Q10), 20% (Q20), 30% (Q30), and 40% (Q40). Growth performance, muscle proximate composition, intestinal histomorphology, and intestinal transcriptomic profiles were analyzed. Growth performance parameters, including final body weight, weight gain rate, specific growth rate, daily feed intake, and condition factor, decreased significantly with increasing QGM inclusion levels compared with the control (p < 0.05). Feed conversion ratio increased significantly only when replacement exceeded 30% (p < 0.05), while survival rate was unaffected (p > 0.05). Muscle crude lipid content was significantly reduced in all QGM-fed groups (p < 0.05), whereas crude protein, moisture, and ash contents were unchanged. Intestinal mucosal fold height increased in the Q30 and Q40 groups, while submucosal width decreased in the Q40 group (p < 0.05). Transcriptomic analysis revealed a dose-dependent increase in differentially expressed genes, mainly enriched in ribosome-related pathways, linoleic acid metabolism, and protein digestion and absorption. High dietary inclusion of QGM (>30%) impaired growth performance in juvenile turbot, whereas low inclusion levels (≤20%) exerted minimal adverse effects. Quinoa germ meal represents a potential alternative protein source, yet its effective utilization requires further optimization to maintain growth performance.
Full article
(This article belongs to the Special Issue State of the Art in Fish Nutrition: Antimicrobials, Immunostimulants, Synbiotics and Alternative Protein Sources)
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Open AccessArticle
Interannual Regime Shifts and Driver Thresholds of Terrestrial Ecosystem Vulnerability in Northwestern Sichuan of China Based on an XGBoost-SHAP Model
by
Cuicui Jiao, Zonggui He, Juan Xu, Xiaobo Yi, Ji Luo and Ping Huang
Biology 2026, 15(4), 303; https://doi.org/10.3390/biology15040303 - 9 Feb 2026
Abstract
TENS constitutes a critical ecological barrier on the southeastern margin of the Qinghai–Tibet Plateau, providing essential services such as water conservation and biodiversity protection and helping to safeguard water security in the upper reaches of the Yangtze and Yellow Rivers. Thus, elucidating its
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TENS constitutes a critical ecological barrier on the southeastern margin of the Qinghai–Tibet Plateau, providing essential services such as water conservation and biodiversity protection and helping to safeguard water security in the upper reaches of the Yangtze and Yellow Rivers. Thus, elucidating its vulnerability dynamics is paramount for regional security. Integrating multi-source spatiotemporal data with an interpretable XGBoost–SHAP framework, we quantified interannual variation in vulnerability and the nonlinear threshold responses of key drivers. The results showed pronounced nonlinear phase changes in vulnerability, with 47.96% of the area experiencing abrupt shifts. Notably, 37.89% of TENS reversed from decreasing to increasing vulnerability. TENS underwent an intensive transition during 2010–2015. Interannual variability was dominated by the coupled influence of human disturbance, soil moisture, and atmospheric water, accounting for nearly 60% of the variation, and showed distinct thresholds. Grazing intensity < 0.90 SU/ha was a moderate disturbance, reducing vulnerability, but it became a stressor above this level. Soil moisture showed an inflection point at 79 mm, while vapor pressure deficit (VPD) < 0.39 kPa enhanced resilience, revising the view of VPD as solely a stress factor. Different ecosystems exhibited distinct driving mechanisms. Grasslands were controlled by shallow soil moisture and grazing, forests by hydrothermal balance, and wetlands by low-intensity anthropogenic disturbance (NTL as a proxy; e.g., tourism development or urban expansion). These findings highlight the risk of abrupt shifts in vulnerability regimes (turning points and trend reversals) and support management that emphasizes quality improvement and threshold-based risk management.
Full article
(This article belongs to the Special Issue Landscape Ecology and Ecosystem Resilience: Patterns, Processes and Sustainability)
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Open AccessReview
Dual Roles of NIX/BNIP3L in Tumors: Friend or Foe
by
Fanghui Ge, Jingxuan Shu, Ziqian Liu, Hong Zhang and Jiandong Wang
Biology 2026, 15(4), 302; https://doi.org/10.3390/biology15040302 - 9 Feb 2026
Abstract
Cancer is one of the leading causes of disease-related death worldwide, and targeting key regulatory genes to induce programmed cell death in tumor cells has emerged as a crucial therapeutic strategy, following surgery, radiotherapy, and chemotherapy. As a mitochondrial outer membrane protein, NIX/BNIP3L
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Cancer is one of the leading causes of disease-related death worldwide, and targeting key regulatory genes to induce programmed cell death in tumor cells has emerged as a crucial therapeutic strategy, following surgery, radiotherapy, and chemotherapy. As a mitochondrial outer membrane protein, NIX/BNIP3L can both mediate apoptosis to inhibit tumor cell growth and promote tumor cell survival by clearing intracellular reactive oxygen species (ROS) through mitophagy. Therefore, we summarize a brief overview of the structure and function of NIX/BNIP3L, as well as the mechanisms of NIX/BNIP3L generation and degradation, the role of NIX/BNIP3L in mediating apoptosis and mitophagy and to advance the understanding of the roles of NIX/BNIP3L in glioblastoma, lung cancer, hepatocellular carcinoma, breast cancer, pancreatic cancer, colorectal cancer and hematologic neoplasms, aiming to enhance treatment precision and improve patient outcomes.
Full article
(This article belongs to the Special Issue From Cell Division to Systemic Dysregulation: Genetic Mechanisms and Biomarkers in Civilization Diseases)
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Open AccessArticle
Effects of Growth Stages of Pugionium Gaertn. on Soil Microbial Biomass C:N:P Stoichiometric Ratios and Homeostasis in Northwestern China’s Desert Regions
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Kezhen Ning, Xiumei Huang, Zhongren Yang, Fenglan Zhang, Xiaoyan Zhang, Dong Zhang and Lizhen Hao
Biology 2026, 15(4), 301; https://doi.org/10.3390/biology15040301 - 9 Feb 2026
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Microbial stoichiometry serves as a fundamental indicator of nutrient limitations in microbial communities. However, the dynamic effects of Pugionium Gaertn. growth on soil microbial C:N:P stoichiometric ratios and their primary driving factors in native desert ecosystems remain poorly understood. This study aimed to
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Microbial stoichiometry serves as a fundamental indicator of nutrient limitations in microbial communities. However, the dynamic effects of Pugionium Gaertn. growth on soil microbial C:N:P stoichiometric ratios and their primary driving factors in native desert ecosystems remain poorly understood. This study aimed to clarify the stage-dependent regulation of microbial C:N:P stoichiometry by Pugionium Gaertn. in native desert ecosystems. This study examined representative Pugionium Gaertn. (P. cornutum and P. dolabratum) in northwestern China’s desert regions, based on investigations conducted during 2022–2023, conducting systematic analysis of variations in rhizosphere soil microbial biomass C, N, and P levels, C:N:P stoichiometric ratios, fungal and bacterial diversity, soil physicochemical properties, and extracellular enzyme activities (EEAs) across different phenological stages. Results demonstrated that Pugionium Gaertn. growth significantly enhanced microbial biomass C, N, and P accumulation during vigorous growth stages. Simultaneously, stoichiometric ratios (C:N, C:P, N:P) exhibited periodic fluctuations, with P limitation characteristics becoming substantially intensified during the reproductive stage. Total soil nitrogen, total phosphorus, and EEAs significantly regulated microbial C:N:P stoichiometric ratios through their effects on bacterial diversity. In P. dolabratum, distinct response pathways were observed between fungi and bacteria to P limitation, indicating species-specific regulatory mechanisms. These findings provide novel insights into the relationship between Pugionium Gaertn. and soil elemental stoichiometry, as well as its influence on elemental dynamic balance at microbial and community levels. Furthermore, the results support ecological adaptation strategies of Pugionium Gaertn. communities in native habitats, offering scientific evidence for vegetation restoration and soil improvement in desert regions.
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Open AccessArticle
Microplastics in Sediments Originating from Abandoned, Lost or Discarded Fishing Gear (ALDFG) in Coastal Areas of the Valencian Community
by
Laura Romeo, Anna Perdichizzi, Adriana Profeta, Dyana Vitale, Vicente Castañer Franch, Marco Casu and Andrea Spinelli
Biology 2026, 15(4), 300; https://doi.org/10.3390/biology15040300 - 9 Feb 2026
Abstract
The increasing presence of abandoned, lost, or discarded fishing gear (ALDFG) on the seafloor is a major source of microplastics (MPs) pollution in coastal ecosystems. This study assessed the concentration, morphology, and chemical composition of MPs in surface sediments collected from Alicante and
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The increasing presence of abandoned, lost, or discarded fishing gear (ALDFG) on the seafloor is a major source of microplastics (MPs) pollution in coastal ecosystems. This study assessed the concentration, morphology, and chemical composition of MPs in surface sediments collected from Alicante and Benidorm, in the Valencian Community, eastern coast of Spain, Mediterranean Sea. Impacted sites with fishing nets were compared to control sites without nets. Two analytical techniques were used for polymer identification, depending on particle size: micro-Fourier Transform Infrared Spectroscopy (µFTIR) and Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy (FTIR-ATR). The results showed significantly higher MPs concentrations in sites affected by ALDFG. The findings highlight a clear link between the presence of fishing nets and MPs accumulation in sediments. This underlines the urgent need for mitigation strategies and recovery of discarded fishing gear. This study addresses a gap in the literature regarding MPs contamination on rocky coastal substrates and calls for further research to assess the long-term ecotoxicological impacts on marine ecosystems.
Full article
(This article belongs to the Topic Bridging Ecosystem Contamination and One Health: Integrating Environmental, Animal, and Human Risk Assessment)
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Open AccessBrief Report
Whole-Genome Identification and Investigation of DNA Methylation Sites in Nosema ceranae
by
Jianfeng Qiu, He Zang, Kaiyao Zhang, Nian Fan, Yunzhen Yang, Haimei Yue, Dafu Chen and Rui Guo
Biology 2026, 15(4), 299; https://doi.org/10.3390/biology15040299 - 8 Feb 2026
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DNA methylation is a key epigenetic modification involved in various biological processes. However, its role in Nosema ceranae remains poorly understood. In this study, we employed Oxford Nanopore Technology sequencing to identify whole-genome DNA methylation patterns in N. ceranae. A total of
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DNA methylation is a key epigenetic modification involved in various biological processes. However, its role in Nosema ceranae remains poorly understood. In this study, we employed Oxford Nanopore Technology sequencing to identify whole-genome DNA methylation patterns in N. ceranae. A total of 140,711 CpG sites, 170,035 CHG sites, and 1,053,635 CHH sites were detected. Methylation was also observed at varying levels in repetitive genomic regions and different gene regions. Furthermore, three 5mC motifs were identified. These findings provide a foundation for investigation the epigenetic regulatory roles and mechanisms of DNA methylation in N. ceranae.
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Open AccessArticle
Transcription of the Extensively Fragmented Mitochondrial Genomes of Human Lice
by
Emily Dunn and Renfu Shao
Biology 2026, 15(4), 296; https://doi.org/10.3390/biology15040296 - 8 Feb 2026
Abstract
The mitochondrial (mt) genomes of animals, including humans, are typically a single circular chromosome containing all mt genes. In several animal lineages, however, mt genomes have become fragmented, with genes distributed on multiple minichromosomes. How fragmented mt genomes are transcribed is still poorly
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The mitochondrial (mt) genomes of animals, including humans, are typically a single circular chromosome containing all mt genes. In several animal lineages, however, mt genomes have become fragmented, with genes distributed on multiple minichromosomes. How fragmented mt genomes are transcribed is still poorly understood. In this study, we investigated the transcription of the extensively fragmented mt genomes of the human head louse (Pediculus humanus capitis) and the human body louse (Pediculus humanus corporis). RNA-seq reads of both subspecies were retrieved from the NCBI Sequence Read Archive database and mapped to their mt genomes. The transcription level of each mt gene, minichromosome, motif, coding region and non-coding region, measured by RPKM (Reads Per Kilobase of transcript per Million mapped reads), TPM (Transcripts Per Million) or read coverage, was analysed statistically. In both subspecies, mt minichromosomes were transcribed entirely, with coding regions transcribed at much higher levels than non-coding regions. The 37 mt genes are transcribed unevenly, with rrnL, cox1, cox2, cox3 and atp6 transcribed at significantly higher levels than several other genes. Many transcription events terminate near a GC-rich motif in the non-coding regions; however, some transcription events pass this motif, leading to the transcription of entire non-coding regions. Despite the drastic difference in mt genome organisation, the human lice share several transcriptional features with humans, but also have unique features related to their fragmented mt genome organisation. The current study represents the first effort into the transcription of fragmented mt genomes. As more RNA-seq data become available, further studies on other animals with fragmented mt genomes are necessary to fully understand how genome fragmentation affects transcription.
Full article
(This article belongs to the Special Issue Mitochondrial Genomics of Arthropods)
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Open AccessArticle
Regulatory T Cells and IFNγ in Mercury-Induced Autoimmunity: Insights from Adoptive Transfer in B10.S Mice
by
Rebecka Salwén, Mehdi Amirhosseini and Said Havarinasab
Biology 2026, 15(4), 298; https://doi.org/10.3390/biology15040298 - 7 Feb 2026
Abstract
Autoimmune diseases result from a breakdown of immune tolerance influenced by genetic and environmental factors. Regulatory T cells (Tregs) maintain immune homeostasis, while interferon-γ (IFNγ) has context-dependent proinflammatory and regulatory roles. In B10.S mice, mercury-induced autoimmunity (HgIA) emerges within approximately 4 weeks of
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Autoimmune diseases result from a breakdown of immune tolerance influenced by genetic and environmental factors. Regulatory T cells (Tregs) maintain immune homeostasis, while interferon-γ (IFNγ) has context-dependent proinflammatory and regulatory roles. In B10.S mice, mercury-induced autoimmunity (HgIA) emerges within approximately 4 weeks of Hg exposure and is marked by antinucleolar antibody (ANoA) production, polyclonal B-cell activation, and deposition of immune complexes in the kidney. We investigated whether Tregs attenuate HgIA and evaluated IFNγ’s role in this regulation. Female WT and IFNγ−/− B10.S mice received HgCl2 or water for 4 weeks until all mice developed ANoA. CD4+CD25+Foxp3+ Tregs or CD4+CD25−Foxp3− cells were transferred into HgCl2-exposed WT recipients and monitored for 13 weeks. Compared with Hg-primed non-Tregs, Hg-primed WT Tregs were statistically associated with significantly reduced autoantibody levels, lower IgG1/IgG2a, and significantly decreased glomerular IgG/C3c deposition, suggesting that Hg exposure may modulate Treg function. Conversely, both water- and Hg-primed Tregs and non-Tregs from IFNγ−/− donors elicited profoundly diminished autoantibody production and renal pathology in recipients. IFNγ−/− mice lacked fibrillarin-specific responses, highlighting its requirement for HgIA initiation. While non-Treg transfer failed to suppress HgIA, Treg transfer reduced HgIA and highlighted relevance for immune-regulatory therapies, especially where environmental toxicants may drive autoimmune disease.
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(This article belongs to the Special Issue Animal Models of Autoimmune Diseases)
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Endothelial PAI-1 Drives Lead-Induced Cerebral Amyloid Angiopathy via Activation of C3+ Decorin+ A1-like Astrocytes
by
Huiying Gu, Cloria Luo and Yansheng Du
Biology 2026, 15(4), 297; https://doi.org/10.3390/biology15040297 - 7 Feb 2026
Abstract
Environmental lead (Pb) exposure remains a significant public health concern, and its association with cerebrovascular injury and Alzheimer’s disease (AD) is increasingly recognized. In this study, we demonstrated using an in vitro system that Pb exposure significantly increased the expression and release of
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Environmental lead (Pb) exposure remains a significant public health concern, and its association with cerebrovascular injury and Alzheimer’s disease (AD) is increasingly recognized. In this study, we demonstrated using an in vitro system that Pb exposure significantly increased the expression and release of endothelial plasminogen activator inhibitor-1 (PAI-1). A conditioned medium collected from Pb-treated endothelial cells induced the formation of complement component 3 (C3)+ decorin+ A1-like astrocytes, which had been shown to be specifically associated with vascular amyloid. Immunoprecipitation with the PAI-1 antibody to remove PAI-1 from the culture medium, or treatment of endothelial cells with PAI-1 inhibitors, significantly inhibited the formation of C3+ decorin+ A1-like astrocytes. Furthermore, in vivo studies further supported this finding, indicating that lead does indeed increase the number of perivascular C3+ decorin+ A1-like astrocytes, and that the PAI-1 inhibitor blocked this induction. Building upon our previous findings, we demonstrate that lead exposure may induce cerebral amyloid angiopathy (CAA) pathology through the formation of C3+ decorin+ A1-like astrocytes mediated by endothelial cell PAI-1. Our results strongly suggest that PAI-1 is a key mediator linking endothelial stress and lead-induced vascular amyloidosis pathology.
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(This article belongs to the Section Neuroscience)
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Mitogenomic Phylogeny and Adaptive Evolution of Snailfishes (Liparidae) Reveal Correlation Between tRNA Rearrangements and Deep-Sea Colonization
by
Ruxiang Wang, Ang Li, Shuai Che, Huan Wang and Shufang Liu
Biology 2026, 15(4), 295; https://doi.org/10.3390/biology15040295 - 7 Feb 2026
Abstract
The snailfish family (Liparidae) represents one of the most rapidly speciating and ecologically diverse lineages of marine fishes, with species distributed across a broad bathymetric range from intertidal zones to the hadal depths. Despite their ecological and evolutionary significance, phylogenetic relationships and adaptive
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The snailfish family (Liparidae) represents one of the most rapidly speciating and ecologically diverse lineages of marine fishes, with species distributed across a broad bathymetric range from intertidal zones to the hadal depths. Despite their ecological and evolutionary significance, phylogenetic relationships and adaptive mechanisms within Liparidae remain poorly resolved due to morphological conservatism, phenotypic plasticity, and limited genomic resources due to challenges such as sampling difficulties and a reliance on partial mtDNA markers. In this study, we sequenced, assembled, and annotated the complete mitochondrial genomes of two snailfish species, Liparis chefuensis and Liparis tanakae, collected from the Yellow Sea. The mitogenome of L. chefuensis is 18,870 bp in length, encoding 13 protein-coding genes (PCGs), 2 rRNAs, and 22 tRNAs, while that of L. tanakae spans 17,485 bp and contains 13 PCGs, 2 rRNAs, and 23 tRNAs. Phylogenetic reconstruction based on the concatenated sequences of 13 mitochondrial PCGs from 15 liparid species revealed that L. chefuensis clusters within the subgenus Lyoliparis, contradicting its previous classification under Careliparis and suggesting a need for taxonomic reassessment. Notably, we identified distinct patterns of tRNA gene rearrangement in the cluster between ND2 and COI, which suggest a link to both phylogeny and habitat depth. Shallow-water species (<30 m) possess the tRNATrp-tRNATyr-tRNAAla-tRNAAsn-tRNACys (WYANC) arrangement, whereas deep-water species (>100 m) display the derived tRNATrp-tRNAAsn-tRNACys-tRNATyr-tRNAAla-tRNACys/tRNAAla (WNCYAC/A) configurations. These rearrangements are hypothesized to originate from tandem duplication events followed by random gene loss, potentially reflecting adaptive evolution to deep-sea environments. Additionally, L. tanakae exhibits a markedly higher number of non-canonical G–U and A–C base pairs in its tRNA secondary structures, indicating substantial structural divergence. Our findings not only provide essential mitogenomic resources for snailfish systematics and species identification but also propose that tRNA rearrangements in mitochondrial genomes may serve as genomic innovations facilitating deep-sea colonization. This study enhances our understanding of mitochondrial genome evolution and environmental adaptation in marine fishes.
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(This article belongs to the Special Issue Genetics and Evolutionary Biology of Aquatic Organisms)
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Neuroprotective Effects of Herbal Formula Yookgong-Dan on Oxidative Stress-Induced Tau Hyperphosphorylation in Rat Primary Hippocampal Neurons
by
Hyunseong Kim, Jin Young Hong, Changhwan Yeo, Hyun Kim, Wan-Jin Jeon, Junseon Lee, Yoon Jae Lee and In-Hyuk Ha
Biology 2026, 15(3), 294; https://doi.org/10.3390/biology15030294 - 6 Feb 2026
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This study sought to evaluate the neuroprotective effects of YGD in an oxidative stress-induced Alzheimer’s disease (AD)-like cellular model and to elucidate the underlying molecular pathways, with a focus on tau phosphorylation, Aβ accumulation, and antioxidant defense mechanisms. Rat primary hippocampal neurons were
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This study sought to evaluate the neuroprotective effects of YGD in an oxidative stress-induced Alzheimer’s disease (AD)-like cellular model and to elucidate the underlying molecular pathways, with a focus on tau phosphorylation, Aβ accumulation, and antioxidant defense mechanisms. Rat primary hippocampal neurons were exposed to hydrogen peroxide to induce oxidative stress. The effects of YGD on neuronal viability, neurite outgrowth, and synaptic integrity were assessed using the immunodetection of microtubule-associated protein 2 (MAP2), postsynaptic density protein 95 (PSD-95), and synapsin-1. Levels of phosphorylated tau and Aβ were quantified, and the involvement of extracellular signal-regulated kinase (ERK), glycogen synthase kinase 3β (GSK3β), and nuclear factor-erythroid 2-related factor-2 (Nrf2) pathways was examined. Additionally, in silico molecular docking studies targeting the ATP-binding site of GSK3β were conducted to screen major phytochemicals from the ten medicinal herbs constituting YGD. YGD markedly enhanced neuronal viability under oxidative stress, promoted neurite extension, and increased synaptic marker expression (MAP2, PSD-95, and synapsin-1). Treatment reduced phosphorylated tau by suppressing ERK and GSK3β activation and significantly decreased Aβ accumulation. YGD also upregulated antioxidant defenses via the activation of the Nrf2 pathway. Docking simulations identified oleanolic acid (from Cornus officinalis) as the most potent GSK3β binder (−9.86 ± 0.40 kcal/mol), forming stable interactions with ARG96, ASN95, and GLU97. Additional compounds, including alisol C, drypemolundein B, and friedelin, demonstrated favorable binding energies and engaged key ATP-binding site residues. YGD confers neuroprotection through the integrated modulation of tau phosphorylation, Aβ pathology, and oxidative stress, partly via the multi-target engagement of GSK3β by its constituent phytochemicals. These findings support that YGD attenuates oxidative stress-induced AD-like cellular alterations.
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Transcriptome Sequencing Analysis Reveals the Mechanisms of Poly-γ-Glutamic Acid Enhanced the Chilling and Freezing Tolerance in Wheat
by
Yuqi Niu, Jiang Liu, Bin Bu, Zhaohui Tang, Yongkang Ren and Haizhen Ma
Biology 2026, 15(3), 293; https://doi.org/10.3390/biology15030293 - 6 Feb 2026
Abstract
Low-temperature stress significantly limits wheat growth and productivity. Poly-γ-glutamic acid (γ-PGA) is an environmentally friendly green molecular material that plays an important role in plant growth and regulation; however, its protective mechanisms against cold stress in wheat remain poorly understood. In this study,
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Low-temperature stress significantly limits wheat growth and productivity. Poly-γ-glutamic acid (γ-PGA) is an environmentally friendly green molecular material that plays an important role in plant growth and regulation; however, its protective mechanisms against cold stress in wheat remain poorly understood. In this study, the effect of γ-PGA on both chilling (4 °C) and freezing (−18 °C) resistance in wheat seedlings and its underlying mechanisms were comparatively studied. The results showed that the γ-PGA-treated seedlings exhibited a 128.81% higher survival rate after freezing stress and maintained significantly greater biomass accumulation under both stress conditions (62.44% and 26.56% higher dry weight under chilling and freezing stress, respectively). A physiological analysis revealed that γ-PGA enhanced osmoprotectant (proline and soluble sugars) accumulation and activated key antioxidant enzymes (SOD, POD, and APX). Then, an RNA-seq analysis identified 11,401 and 7721 differentially expressed genes under chilling and freezing stress, respectively, with 3598 common genes constituting a core cold-response network. KEGG and GO analyses demonstrated significant enrichment in pathways related to carbon metabolism, glutathione metabolism, phenylpropanoid–flavonoid biosynthesis, fatty acid metabolism, and cell wall organization. Notably, γ-PGA strongly upregulated key genes in phenylpropanoid–flavonoid metabolism (TraesCS2B02G615000 and TraesCS2B02G624400), glutathione metabolism (TraesCS1B02G127900), and lipid metabolism (TraesCS1B02G018700). These results provide comprehensive molecular insights into γ-PGA-mediated cold tolerance and support its potential application in sustainable wheat production under low-temperature stress conditions.
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(This article belongs to the Collection Abiotic Stress in Plants and Resilience: Recent Advances)
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Involvement of Nitric Oxide in TRPV4-Induced Relaxations of Mouse and Human Pulmonary Arteries
by
Vytis Bajoriūnas, Agilė Tunaitytė, Augusta Volkevičiūtė, Silvijus Abramavičius, Ieva Bajoriūnienė, Edgaras Stankevičius and Ulf Simonsen
Biology 2026, 15(3), 292; https://doi.org/10.3390/biology15030292 (registering DOI) - 6 Feb 2026
Abstract
The transient receptor potential vanilloid 4 channel (TRPV4) is thought to play a pivotal role in pulmonary arterial circulation. The present study hypothesizes that TRPV4 activation increases nitric oxide (NO) release and activates calcium-activated potassium of intermediate conductance (KCa3.1) in pulmonary arteries. Pulmonary
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The transient receptor potential vanilloid 4 channel (TRPV4) is thought to play a pivotal role in pulmonary arterial circulation. The present study hypothesizes that TRPV4 activation increases nitric oxide (NO) release and activates calcium-activated potassium of intermediate conductance (KCa3.1) in pulmonary arteries. Pulmonary arteries were isolated from wild-type mice (wt) and mice deficient in KCa3.1 channels (Kcnn4−/−) and mounted for simultaneous NO concentration and relaxation measurements. Human small pulmonary arteries were isolated and mounted in microvascular myographs for isometric tension recordings. Acetylcholine-induced increases in NO and relaxation of pulmonary arteries were slightly decreased in pulmonary arteries from Kcnn4−/− versus wt mice. An activator of TRPV4 channels, GSK1016790A, increased NO and relaxation to the same degree in pulmonary arteries from wt and Kcnn4−/− mice. A blocker of TRPV4 channels, HC06704, inhibited increases in NO concentration with no effect on acetylcholine (ACh) relaxation in pulmonary arteries from wt mice, but blocked increases in NO concentration and relaxation in pulmonary arteries from Kcnn4−/− mice and responses to GSK1016790A in pulmonary arteries from wt and Kcnn4−/− mice. Concentration-dependent relaxations induced by an inhibitor of sarcoplasmic Ca-ATPase, cyclopiazonic acid, were blocked in the presence of an inhibitor of NO synthase and a blocker of KCa3.1 channels, TRAM-34, in pulmonary arteries from wt mice, but were unaltered in the presence of TRAM-34 in arteries from Kcnn4−/− mice, or the presence of a blocker of TRPV4 channels. In small human pulmonary arteries, ACh and sodium nitroprusside (SNP) induced concentration-dependent relaxations, blocked by endothelial cell removal, in the presence of an inhibitor of NO synthase and the KCa3.1 channel blocker TRAM-34. GSK1016790A induced relaxation of human pulmonary arteries with endothelium, but failed to relax arteries without endothelium. The findings suggest that TRPV4 channels are involved in endothelium-dependent relaxation and likely regulate pulmonary vascular tone by modulating NO release.
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(This article belongs to the Section Biochemistry and Molecular Biology)
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