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Plants, Volume 14, Issue 1 (January-1 2025) – 144 articles

Cover Story (view full-size image): The accumulation of free proline in plants has been associated with stress tolerance and, more recently, with plant development, especially in reproductive and elongating organs. Despite the correlation between proline effects and accumulation, the evidence suggests that proline metabolism, rather than proline itself, is the main cause of its multiple effects. However, the underlying mechanisms and the importance of these functions are still poorly understood. Based on the recently discovered interaction between proline metabolism and ROS signaling in modulating Arabidopsis root meristem size, we propose that this interaction may be a possible mechanistic explanation for many of the functions attributed to proline, and we present a literature review to discuss and support this hypothesis. View this paper
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12 pages, 2644 KiB  
Article
Photosynthetic Induction Characteristics in Saplings of Four Sun-Demanding Trees and Shrubs
by Qiuping Liu, Wei Jin, Liying Huang, Danfeng Wang, Kedong Xu and Yunmin Wei
Plants 2025, 14(1), 144; https://doi.org/10.3390/plants14010144 - 6 Jan 2025
Viewed by 661
Abstract
Light serves as the unique driving force of photosynthesis in plants, yet its intensity varies over time and space, leading to corresponding changes in the photosynthetic rate. Here, the photosynthetic induction response under constant and fluctuating light was examined in naturally occurring saplings [...] Read more.
Light serves as the unique driving force of photosynthesis in plants, yet its intensity varies over time and space, leading to corresponding changes in the photosynthetic rate. Here, the photosynthetic induction response under constant and fluctuating light was examined in naturally occurring saplings of four sun-demanding woody species, Eucalyptus. Ficus macrocarpa L., Hibiscus syriacus L. and Ficus carica L. We aimed to find out the relations among gas exchange parameter adaptions among different species during photosynthetic induction. The net photosynthetic rates (A) versus time course curves were sigmoidal or hyperbolic after the dark-adapted leaves were irradiated by continuous saturated light. Compared with other species, Ficus carica L. have the largest net photosynthesis rate, stomatal conductance to CO2 (gsc), and the maximum carboxylation rate (Vcmax) at both the initial and steady photosynthetic state. The initial gsc (gsci) was as much as sixfold higher compared to the other shrub, Hibiscus syriacus L. The time required to reach 90% of A (tA90) was 7–30 min; tA90 of Ficus carica L. and Ficus macrocarpa L. were lower than that of the other two species. The time required to reach 90% of gsc (tgsc90) significantly lagged behind tA90 among species. Biochemical induction was fast in leaves of Ficus carica L., as about 4 min were needed to reach 90% of Vcmax, while the other species needed 7–18 min. Correlation analysis showed that the tgsc90 was the main factor in limiting tA90, especially for Eucalyptus spp. and Hibiscus syriacus L.; gsci was negatively correlated with tgsc90 among species. Moreover, time-integrated limitation analysis revealed that gsc still accounted for the largest limitation in constraining A of Eucalyptus spp. and Hibiscus syriacus L. and Ficus macrocarpa L. Overall, the findings suggest that to enhance the carbon gain by woody species under naturally dynamic light environments, attention should be focused on improving the rate of stomatal opening or initial stomatal conductance. Full article
(This article belongs to the Special Issue Photosynthesis and Carbon Metabolism in Higher Plants and Algae)
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22 pages, 14532 KiB  
Article
Assessing Vegetation Canopy Growth Variations in Northeast China
by Lijie Lu, Lingxue Yu, Xuan Li, Li Gao, Lun Bao, Xinyue Chang, Xiaohong Gao and Zhongquan Cai
Plants 2025, 14(1), 143; https://doi.org/10.3390/plants14010143 - 6 Jan 2025
Viewed by 729
Abstract
Studying climate change’s impact on vegetation canopy growth and senescence is significant for understanding and predicting vegetation dynamics. However, there is a lack of adequate research on canopy changes across the lifecycles of different vegetation types. Using GLASS LAI (leaf area index) data [...] Read more.
Studying climate change’s impact on vegetation canopy growth and senescence is significant for understanding and predicting vegetation dynamics. However, there is a lack of adequate research on canopy changes across the lifecycles of different vegetation types. Using GLASS LAI (leaf area index) data (2001–2020), we investigated canopy development (April–June), maturity (July–August), and senescence (September–October) rates in Northeast China, focusing on their responses to preseason climatic factors. We identified that early stages saw canopy development acceleration, with over 71% of areas experiencing such acceleration in April and May. As the vegetation grew, the accelerating canopy development slowed down, and the canopy reached its maturation earlier. By analyzing the partial correlation between canopy growth and preseason climatic factors, it was identified that changes in canopy growth were most significantly affected by preseason air temperature. A positive correlation was observed in the early stages, which shifted to a negative correlation during canopy maturation and senescence. Notably, the transition timing varied among different vegetation types, with grasslands (June) occurring earlier than forests (July) and farmlands (August). Additionally, grassland canopy growth showed a stronger response to precipitation than forests and farmlands, with a lagged effect of 2.50 months. Our findings improve understanding of vegetation canopy growth across different stages, holding significant importance for ecological environmental monitoring, land-use planning, and sustainable development. Full article
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12 pages, 1688 KiB  
Article
Development and Validation of Multiplex-PCR Assay for β-Carotene hydroxylase and γ-Tocopherol methyl transferase Genes Governing Enhanced Multivitamins in Maize for Its Application in Genomics-Assisted Breeding
by Munegowda Manoj Gowda, Vignesh Muthusamy, Rashmi Chhabra, Hriipulou Duo, Saikat Pal, Nisrita Gain, Ashvinkumar Katral, Ravindra K. Kasana, Rajkumar U. Zunjare and Firoz Hossain
Plants 2025, 14(1), 142; https://doi.org/10.3390/plants14010142 - 6 Jan 2025
Viewed by 626
Abstract
Traditional maize possesses low concentrations of provitamin-A and vitamin-E, leading to various health concerns. Mutant alleles of crtRB1 and vte4 that enhance β-carotene (provitamin-A) and α-tocopherol (vitamin-E), respectively, in maize kernels have been explored in several biofortification programs. For genetic improvement of these [...] Read more.
Traditional maize possesses low concentrations of provitamin-A and vitamin-E, leading to various health concerns. Mutant alleles of crtRB1 and vte4 that enhance β-carotene (provitamin-A) and α-tocopherol (vitamin-E), respectively, in maize kernels have been explored in several biofortification programs. For genetic improvement of these target nutrients, uniplex-PCR assays are routinely used in marker-assisted selection. However, due to back-to-back breeding seasons, the time required for genotyping individually for each target gene in large backcross populations becomes a constraint for advancing the generations. Additionally, multiple PCR assays for various genes increase the required costs and resources. Here, we aimed to develop a multiplex-PCR assay to simultaneously identify different allelic forms of crtRB1 and vte4 genes and validate them in a backcross-based segregating population. The PCR assay was carried out using newly developed primers for crtRB1 and a gene-specific primer for vte4. The uniplex-PCR assay was standardized for selected primer pairs in the BC1F1 population segregating for crtRB1 and vte4 genes. Subsequently, a multiplex-PCR assay for crtRB1 and vte4 genes was developed and employed for genotyping in the BC1F1 population. The assay differentiated among four possible genotypic classes, namely crtRB1+crtRB1/vte4+vte4, crtRB1crtRB1/vte4+vte4, crtRB1+crtRB1/vte4+vte4+, and crtRB1crtRB1/vte4+vte4+. This newly developed multiplex-PCR assay saved 41.7% of the cost and 35.6% of the time compared to two individual uniplex-PCR assays. The developed assay could accelerate maize nutritional quality breeding programs through rapid and cost-effective genotyping for the target genes. This is the first report of a multiplex-PCR assay specific to crtRB1 and vte4 genes for its use in genomics-assisted breeding in maize. Full article
(This article belongs to the Special Issue Molecular Marker-Assisted Technologies for Crop Breeding)
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16 pages, 3622 KiB  
Article
Evaluating a Soil Amendment for Cadmium Mitigation and Enhanced Nutritional Quality in Faba Bean Genotypes: Implications for Food Safety
by Liping Cheng, Jiapan Lian, Xin Wang, Mehr Ahmed Mujtaba Munir, Xiwei Huang, Zhenli He, Chengjian Xu, Wenbin Tong and Xiaoe Yang
Plants 2025, 14(1), 141; https://doi.org/10.3390/plants14010141 - 6 Jan 2025
Viewed by 644
Abstract
Soil amendments combined with low cadmium (Cd)-accumulating crops are commonly used for remediating Cd contamination and ensuring food safety. However, the combined effects of soil amendments and the cultivation of faba beans (Vicia faba L.)—known for their high nutritional quality and low [...] Read more.
Soil amendments combined with low cadmium (Cd)-accumulating crops are commonly used for remediating Cd contamination and ensuring food safety. However, the combined effects of soil amendments and the cultivation of faba beans (Vicia faba L.)—known for their high nutritional quality and low Cd accumulation—in moderately Cd-contaminated soils remain underexplored. This study investigates the impact of a soil amendment (SA) on agronomic traits, seed nutrition, and Cd accumulation in 11 faba bean genotypes grown in acidic soil (1.3 mg·kg−1 Cd, pH 5.39). The SA treatment increased soil pH to 6.0 (an 11.31% increase) and reduced DTPA-Cd by 37.1%. Although the average yield of faba beans decreased marginally by 8.74%, it remained within the 10% national permissible limit. Notably, SA treatment reduced Cd concentration in seeds by 60% and significantly mitigated Mn and Al toxicity. Additionally, SA treatment enhanced levels of essential macronutrients (Ca, Mg, P, S) and micronutrients (Mo, Cu) while lowering Phytate (Phy)/Ca, Phy/Mg, and Phy/P ratios, thus improving mineral nutrient bioavailability. Among the genotypes, F3, F5, and F6 showed the most favorable balance of nutrient quality, and yield following SA application. This study provides valuable insights into the effectiveness of SA for nutrient fortification and Cd contamination mitigation in Cd-contaminated farmland. Full article
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16 pages, 4973 KiB  
Article
Exploring Co-Occurrence Patterns to Understand Epiphyte–Liana Interactions
by Sergio J. Ceballos, Ezequiel Aráoz and Tobías Nicolás Rojas
Plants 2025, 14(1), 140; https://doi.org/10.3390/plants14010140 - 6 Jan 2025
Viewed by 490
Abstract
Although epiphytes and lianas share the same habitat, most research has treated these two groups independently. This study aimed to evaluate the co-occurrence of vascular epiphytes and lianas in the subtropical montane forests of northwestern Argentina. We recorded epiphyte cover and liana basal [...] Read more.
Although epiphytes and lianas share the same habitat, most research has treated these two groups independently. This study aimed to evaluate the co-occurrence of vascular epiphytes and lianas in the subtropical montane forests of northwestern Argentina. We recorded epiphyte cover and liana basal area on trees ≥ 10-cm-dbh in 120 20 × 20 m plots in the Sierra de San Javier (Tucumán, Argentina). Of the 2111 trees sampled, 727 (34%) hosted lianas, and 1095 (52%) hosted epiphytes. Both plant groups were found together on 20% of the sampled trees. The species richness of lianas and epiphytes, along with liana basal area and epiphyte cover, increased with tree diameter and reached higher values in mature forests compared to successional forests. Both groups colonized the same canopy tree species with larger diameters, whereas smaller trees were typically colonized by either lianas or epiphytes, but not both. Epiphyte species were more likely to co-occur with liana species with specialized climbing mechanisms. Tree size and forest type (mature vs. successional) emerged as key factors influencing the co-occurrence of lianas and epiphytes in these forests. This study establishes a basis for future research into the interactions between lianas and epiphytes, seeking to determine whether they co-occur in the same habitats. Full article
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21 pages, 4564 KiB  
Article
Intermittent Supplementation with Far-Red Light Accelerates Leaf and Bud Development and Increases Yield in Lettuce
by Yanke Liu, Rong Ye, Xinying Gao, Rongcheng Lin and Yang Li
Plants 2025, 14(1), 139; https://doi.org/10.3390/plants14010139 - 6 Jan 2025
Viewed by 564
Abstract
Supplementation with far-red light in controlled environment agriculture production can enhance yield by triggering the shade avoidance syndrome. However, the effectiveness of this yield enhancement can be further improved through intermittent far-red light supplementation. In this study, the effects are explored of varying [...] Read more.
Supplementation with far-red light in controlled environment agriculture production can enhance yield by triggering the shade avoidance syndrome. However, the effectiveness of this yield enhancement can be further improved through intermittent far-red light supplementation. In this study, the effects are explored of varying far-red light photon intensities and intermittent exposure durations—specifically at 5, 15, 30, and 45 min intervals—on the growth and development of lettuce (Lactuca sativa) in plant factories, while maintaining a constant red light photon flux and daily light integral. The results showed that compared to constant far-red light, 30 min intermittent far-red light increased yield by 11.7% and the number of leaves and buds by 2.66. Furthermore, the various metrics demonstrated that intermittent far-red light supplementation enhanced the overall effectiveness of the far-red light treatment. This was validated by analyzing phytohormone content and the expression of genes related to hormone metabolism and transport at the tip of the lettuce stems. Transcriptome analysis revealed that the differences in gene expression between treatments were primarily concentrated in genes related to signaling, hormone metabolism, and transport. Weighted Gene Co-expression Network Analysis identified the co-expression modules associated with yield and quality. Additionally, dynamic expression analysis showed genes involved to far-red photoreception, response, and hormone metabolism and transport exhibited optimal rhythmic responses only under 30 min intermittent far-red light supplementation. This suggests that intermittent far-red light irradiation at 30 min intervals is the most effective for activating far-red light signaling influencing hormone metabolism and transport, thereby accelerating the growth of lettuce leaves and buds and ultimately increasing yield. Full article
(This article belongs to the Section Crop Physiology and Crop Production)
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19 pages, 1404 KiB  
Article
Evaluating Maize Hybrids for Yield, Stress Tolerance, and Carotenoid Content: Insights into Breeding for Climate Resilience
by Călin Popa, Roxana Elena Călugăr, Andrei Varga, Edward Muntean, Ioan Băcilă, Carmen Daniela Vana, Ionuț Racz, Nicolae Tritean, Ioana Virginia Berindean, Andreea D. Ona and Leon Muntean
Plants 2025, 14(1), 138; https://doi.org/10.3390/plants14010138 - 6 Jan 2025
Viewed by 608
Abstract
To ensure food and feed security, modern maize hybrids must not only perform well under changing climate conditions but also consistently achieve higher and stable yields, exhibit maximum tolerance to stress factors, and produce high quality grains. In a study conducted in 2022 [...] Read more.
To ensure food and feed security, modern maize hybrids must not only perform well under changing climate conditions but also consistently achieve higher and stable yields, exhibit maximum tolerance to stress factors, and produce high quality grains. In a study conducted in 2022 and 2023, 50 maize hybrids were developed from crosses of five elite (highly productive) inbred lines and ten lines possessing favorable genes for carotenoid content. These hybrids were tested under particularly unfavorable conditions for maize cultivation. The aim was to identify which lines effectively transmit the desired traits to the offspring (general combining ability—GCA), and to identify superior hybrids in terms of productivity, adaptability, and quality (specific combining ability—SCA). The study revealed that total carotenoids ranged from 2.30 to 40.20 μg/g for the inbred lines and from 7.45 to 25.08 μg/g for hybrids. A wider distribution of values was observed in the inbred lines compared to the hybrids for key carotenoids such as lutein, zeaxanthin, β-cryptoxanthin, and β-carotene. Among the hybrids, notable performers in yield, adaptability, and carotenoid content included E390×D302, A452×D302, and A447×D302. The paternal inbred line D302 exhibited a high general combining ability for yield (1446 kg ha−1) and, when crossed with several inbred lines, produced hybrids with enhanced yields and higher levels of zeaxanthin, lutein, and β-carotene, as well as improved unbroken plants percent. Full article
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28 pages, 10188 KiB  
Article
Potential of a Remotely Piloted Aircraft System with Multispectral and Thermal Sensors to Monitor Vineyard Characteristics for Precision Viticulture
by Leeko Lee, Andrew Reynolds, Briann Dorin and Adam Shemrock
Plants 2025, 14(1), 137; https://doi.org/10.3390/plants14010137 - 6 Jan 2025
Viewed by 697
Abstract
Grapevines are subjected to many physiological and environmental stresses that influence their vegetative and reproductive growth. Water stress, cold damage, and pathogen attacks are highly relevant stresses in many grape-growing regions. Precision viticulture can be used to determine and manage the spatial variation [...] Read more.
Grapevines are subjected to many physiological and environmental stresses that influence their vegetative and reproductive growth. Water stress, cold damage, and pathogen attacks are highly relevant stresses in many grape-growing regions. Precision viticulture can be used to determine and manage the spatial variation in grapevine health within a single vineyard block. Newer technologies such as remotely piloted aircraft systems (RPASs) with remote sensing capabilities can enhance the application of precision viticulture. The use of remote sensing for vineyard variation detection has been extensively investigated; however, there is still a dearth of literature regarding its potential for detecting key stresses such as winter hardiness, water status, and virus infection. The main objective of this research is to examine the performance of modern remote sensing technologies to determine if their application can enhance vineyard management by providing evidence-based stress detection. To accomplish the objective, remotely sensed data such as the normalized difference vegetation index (NDVI) and thermal imaging from RPAS flights were measured from six commercial vineyards in Niagara, ON, along with the manual measurement of key viticultural data including vine water stress, cold stress, vine size, and virus titre. This study verified that the NDVI could be a useful metric to detect variation across vineyards for agriculturally important variables including vine size and soil moisture. The red-edge and near-infrared regions of the electromagnetic reflectance spectra could also have a potential application in detecting virus infection in vineyards. Full article
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20 pages, 2406 KiB  
Review
The Roles of MicroRNAs in the Regulation of Rice–Pathogen Interactions
by Yanfeng Jia, Kai Wei, Jiawang Qin, Wenxue Zhai, Quanlin Li and Yalan Li
Plants 2025, 14(1), 136; https://doi.org/10.3390/plants14010136 - 6 Jan 2025
Viewed by 770
Abstract
Rice is exposed to attacks by the three most destructive pathogens, Magnaporthe oryzae (M. oryzae), Xanthomonas oryzae pv. oryzae (Xoo), and Rhizoctonia solani (R. solani), which cause substantial yield losses and severely threaten food security. To cope [...] Read more.
Rice is exposed to attacks by the three most destructive pathogens, Magnaporthe oryzae (M. oryzae), Xanthomonas oryzae pv. oryzae (Xoo), and Rhizoctonia solani (R. solani), which cause substantial yield losses and severely threaten food security. To cope with pathogenic infections, rice has evolved diverse molecular mechanisms to respond to a wide range of pathogens. Among these strategies, plant microRNAs (miRNAs), endogenous single-stranded short non-coding RNA molecules, have emerged as promising candidates in coordinating plant–pathogen interactions. MiRNAs can modulate target gene expression at the post-transcriptional level through mRNA cleavage and/or translational inhibition. In rare instances, they also influence gene expression at the transcriptional level through DNA methylation. In recent years, substantial advancements have been achieved in the investigation of microRNA-mediated molecular mechanisms in rice immunity. Therefore, we attempt to summarize the current advances of immune signaling mechanisms in rice–pathogen interactions that are regulated by osa-miRNAs, including their functions and molecular mechanisms. We also focus on recent findings concerning the role of osa-miRNAs that respond to M. oryzae, Xoo, and R. solani, respectively. These insights enhance our understanding of how the mechanisms of osa-miRNAs mediate rice immunity and may facilitate the development of improved strategies for breeding pathogen-resistant rice varieties. Full article
(This article belongs to the Section Plant Molecular Biology)
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12 pages, 5552 KiB  
Article
Field Investigation of Wave Attenuation in a Mangrove Forest Dominated by Avicennia marina (Forsk.) Viern.
by Xing Wei, Wenyuan Mo, Lanlan Xiong, Xin Hu and Hao Cheng
Plants 2025, 14(1), 135; https://doi.org/10.3390/plants14010135 - 5 Jan 2025
Viewed by 644
Abstract
Based on field observation at the north coast of the Zhanjiang Bay in southern China, the characteristics of wave attenuation due to the drag force of one mangrove species, Avicennia marina (Forsk.) Viern., were quantitatively analyzed. The results demonstrated that the mean significant [...] Read more.
Based on field observation at the north coast of the Zhanjiang Bay in southern China, the characteristics of wave attenuation due to the drag force of one mangrove species, Avicennia marina (Forsk.) Viern., were quantitatively analyzed. The results demonstrated that the mean significant wave height decreased by ~62% within a forest belt up to 80 m due to various bio-physical interactions. Affected by the unique vertical configuration of vegetation, the wave attenuation rate is positively correlated with water depth. The drag force within the forest can be approximated by the function Cd=0.7344e0.1409Am, where Am is the projected area of the submerged obstacle at a certain water depth. The wave attenuation rate and the vegetation density (ρveg) in volume (‰) satisfy the fitting relationship of r=5×104·ρveg3.6×103. These findings can accumulate quantitative information for studying the influence of mangrove vegetation on wave attenuation characteristics and provide necessary basic data for modeling studies to investigate the processes contributing to the attenuation capacity of mangroves. Full article
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22 pages, 2385 KiB  
Article
Assessment of Fruit Traits and Antioxidant Capacity in Wild and Cultivated Genotypes of Ziziphus sp.
by Radu Liviu Șumălan, Dana Maria Copolovici, Manuela Crișan, Florin Stănică, Renata Maria Șumălan, Andreea Lupitu, Simona Ioana Vicas, Silvia Mot, Lucian Copolovici and Sorin Ciulca
Plants 2025, 14(1), 134; https://doi.org/10.3390/plants14010134 - 5 Jan 2025
Viewed by 643
Abstract
The genus Ziziphus includes numerous species, both cultivated and wild, offering significant genetic variability and economic potential that are often overlooked. Due to their high variability and ecological plasticity, jujube species and genotypes can be utilized in marginal areas and on land where [...] Read more.
The genus Ziziphus includes numerous species, both cultivated and wild, offering significant genetic variability and economic potential that are often overlooked. Due to their high variability and ecological plasticity, jujube species and genotypes can be utilized in marginal areas and on land where few plants could be efficiently exploited. This study investigated variations in morphological characteristics (qualitative and quantitative), bioactive content (e.g., DPPH radicals), and antioxidant capacity in fruits, leaves, and stones of cultivated Z. jujuba genotypes (‘Hu Ping Zao’ and ‘Jun Zao’) and wild genotypes (Z. acido-jujuba and ‘Jurilovca’), using different solvents (water, ethanol, and methanol). The mass and dimensions of the fruits as well as their parameters (fresh and dry weight, length, width, and pulp-to-stone ratio) and the antioxidant potential of different plant organ types (leaves, fruit pulps, and stones) were determined. The results showed that the cultivated genotypes produced larger and heavier fruits with a higher pulp percentage than the wild forms of the same species. However, the wild forms exhibited higher antioxidant capacities than the cultivated genotypes, depending on the type of plant organ analyzed and the solvent used for extraction. Full article
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23 pages, 10756 KiB  
Article
WRKY Transcription Factors Modulate the Flavonoid Pathway of Rhododendron chrysanthum Pall. Under UV-B Stress
by Wang Yu, Xiangru Zhou, Jinhao Meng, Hongwei Xu and Xiaofu Zhou
Plants 2025, 14(1), 133; https://doi.org/10.3390/plants14010133 - 4 Jan 2025
Viewed by 593
Abstract
The depletion of the ozone layer has resulted in elevated ultraviolet-B (UV-B) radiation levels, posing a significant risk to terrestrial plant growth. Rhododendron chrysanthum Pall. (R. chrysanthum), adapted to high-altitude and high-irradiation environments, has developed unique adaptive mechanisms. This study exposed [...] Read more.
The depletion of the ozone layer has resulted in elevated ultraviolet-B (UV-B) radiation levels, posing a significant risk to terrestrial plant growth. Rhododendron chrysanthum Pall. (R. chrysanthum), adapted to high-altitude and high-irradiation environments, has developed unique adaptive mechanisms. This study exposed R. chrysanthum to UV-B radiation for two days, with an 8 h daily treatment, utilizing metabolomic and transcriptomic analyses to explore the role of WRKY transcription factors in the plant’s UV-B stress response and their regulation of flavonoid synthesis. UV-B stress resulted in a significant decrease in rETR and Ik and a significant increase in 1-qP. These chlorophyll fluorescence parameters indicate that UV-B stress impaired photosynthesis in R. chrysanthum. Faced with the detrimental impact of UV-B radiation, R. chrysanthum is capable of mitigating its effects by modulating its flavonoid biosynthetic pathways to adapt positively to the stress. This study revealed changes in the expression of 113 flavonoid-related metabolites and 42 associated genes, with WRKY transcription factors showing significant correlation with these alterations. WRKY transcription factors can influence the expression of key enzyme genes in the flavonoid metabolic pathway, thereby affecting metabolite production. A theoretical reference for investigating plant stress physiology is provided in this work, which also offers insights into the stress responses of alpine plants under adverse conditions. Full article
(This article belongs to the Special Issue Responses of Crops to Abiotic Stress)
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12 pages, 1010 KiB  
Article
Response of Crop Yield and Productivity Contribution Rate to Long-Term Different Fertilization in Northeast of China
by Xingzhu Ma, Xiaoyu Hao, Yue Zhao, Xinhua Peng, Jinghong Ji, Shuangquan Liu, Yu Zheng, Lei Sun and Baoku Zhou
Plants 2025, 14(1), 132; https://doi.org/10.3390/plants14010132 - 4 Jan 2025
Viewed by 600
Abstract
To reveal the changes in crop yield and contribution rate of black soil productivity under long-term different fertilization conditions in black soil areas and to find the important significance of fertilization for sustainable and stable crop yield, high yield, and improving the contribution [...] Read more.
To reveal the changes in crop yield and contribution rate of black soil productivity under long-term different fertilization conditions in black soil areas and to find the important significance of fertilization for sustainable and stable crop yield, high yield, and improving the contribution rate of black soil nutrients. Based on the long-term experiment of black soil fertility in Harbin, the Ministry of Agriculture and Rural Affairs, under the maize–wheat–soybean rotation system, crop yield, sustainability and stability of yield, the contribution rate of black soil productivity, and natural nutrient supply capacity under 10 fertilization treatments (CK, NP, NK, PK, NPK, M, MNP, MNK, MPK, and MNPK) were analyzed. Results showed that, compared with the treatment of chemical fertilizer, yields of maize, wheat, and soybeans increased under treatment of organic fertilizer combined with chemical fertilizer, among which the yields of maize and wheat changed the most. As the rotation period lengthened, the sustainable yield index (SYI) values of chemical fertilizer treatment and its combination with organic fertilizer treatment gradually decreased. During the rotation period, the SYI value follows: chemical fertilizer combined with organic fertilizer > chemical fertilizer > organic fertilizer. The coefficient of variation (CV) of yield stability showed an overall trend of increasing first and then decreasing, with individual treatments showing a gradual increasing trend (NP and NPK; MNP and MNPK). Under different rotation periods, the overall contribution rate of soil productivity of long-term organic fertilizer combined with chemical fertilizer treatment was higher than that of single chemical fertilizer treatment. With the extension of the rotation period, the contribution rate of soil productivity of NPK treatment was higher and slightly increased, while other treatments showed a downward trend. Although the contribution rate of soil productivity of organic–inorganic fertilizer combined treatment (MNP and MNK) showed a downward trend, it still remained at a high level (97.2% and 95.9%). In addition, the black soil has strong phosphorus and potassium supply capacity; nitrogen was lower than those two elements, with an average natural potassium supply capacity of 94.0–97.1%. Therefore, the combination of organic and inorganic fertilizers is one of the most effective fertilization measures to stabilize crop yield in the black soil region. Nitrogen fertilizer, as a limiting factor for crop growth in the black soil region, should be emphasized in its application. Full article
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21 pages, 2319 KiB  
Article
Drought and High Temperatures Impact the Plant–Pollinator Interactions in Fagopyrum esculentum
by Corentin Defalque, Joy Laeremans, Jonathan Drugmand, Chanceline Fopessi Tcheutchoua, Yu Meng, Meiliang Zhou, Kaixuan Zhang and Muriel Quinet
Plants 2025, 14(1), 131; https://doi.org/10.3390/plants14010131 - 4 Jan 2025
Viewed by 665
Abstract
As a result of climate change, temperate regions are facing the simultaneous increase in water and heat stress. These changes may affect the interactions between plants and pollinators, which will have an impact on entomophilous crop yields. Here, we investigated the consequences of [...] Read more.
As a result of climate change, temperate regions are facing the simultaneous increase in water and heat stress. These changes may affect the interactions between plants and pollinators, which will have an impact on entomophilous crop yields. Here, we investigated the consequences of high temperatures and water stress on plant growth, floral biology, flower-reward production, and insect visitation of five varieties of common buckwheat (Fagopyrum esculentum), an entomophilous crop of growing interest for sustainable agriculture. The plants were grown under two temperature regimes (21 °C/19 °C and 28 °C/26 °C, day/night) and two watering regimes (well-watered and water-stressed). Our results showed that the reproductive growth was more affected by drought and high temperatures than was the vegetative growth, and that combined stress had more detrimental effects. However, the impact of drought and high temperatures was variety-dependent. Drought and/or high temperatures reduced the number of open flowers per plant, as well as the floral resources (nectar and pollen), resulting in a decrease in pollinator visits, mainly under combined stress. Although the proportion of Hymenoptera visiting the flowers decreased with high temperatures, the proportion of Diptera remained stable. The insect visiting behavior was not strongly affected by drought and high temperatures. In conclusion, the modification of floral display and floral resources induced by abiotic stresses related to climate change alters plant–pollinator interactions in common buckwheat. Full article
(This article belongs to the Special Issue Interaction Between Flowers and Pollinators)
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26 pages, 7553 KiB  
Article
Chemical Composition, In Vivo, and In Silico Molecular Docking Studies of the Effect of Syzygium aromaticum (Clove) Essential Oil on Ochratoxin A-Induced Acute Neurotoxicity
by Mostapha Brahmi, Djallal Eddine H. Adli, Imane Kaoudj, Faisal K. Alkholifi, Wafaa Arabi, Soumia Sohbi, Kaddour Ziani, Khaled Kahloula, Miloud Slimani and Sherouk Hussein Sweilam
Plants 2025, 14(1), 130; https://doi.org/10.3390/plants14010130 - 4 Jan 2025
Viewed by 728
Abstract
The aim of our research was to understand the impact of ochratoxin A (OTA) exposure on various physiological and behavioral aspects in adult Wistar rats, and to evaluate the efficacy of a Syzygium aromaticum essential oil (EOC) treatment in restoring the damage caused [...] Read more.
The aim of our research was to understand the impact of ochratoxin A (OTA) exposure on various physiological and behavioral aspects in adult Wistar rats, and to evaluate the efficacy of a Syzygium aromaticum essential oil (EOC) treatment in restoring the damage caused by this toxin. The essential oils were extracted by hydrodistillation, a yield of 12.70% was obtained for EOC, and the GC-MS characterization of this essential oil revealed that its principal major components are eugenol (80.95%), eugenyl acetate (10.48%), β-caryophyllene (7.21%), and α-humulene (0.87%). Acute OTA intoxication was induced by an intraperitoneal (IP) injection of 289 µg/kg/b.w. every 48 h for 12 doses, resulting in significant reductions in the body and brain weights of exposed rats when compared with controls. The neurobehavioral analysis using several behavioral testing techniques, such as the forced swimming, the dark/light test, the Morris water maze, and the open field test, clearly revealed that OTA exposure causes neurobehavioral disorders, including decreased locomotor activity, a reduced willingness to explore the environment, reflecting a state of stress, anxiety and depression, as well as impaired memory and learning. In addition, OTA intoxication has been associated with metabolic disturbances such as hyperglycemia and hypercortisolemia. However, treatment with EOC mitigated these adverse effects by improving body and brain weights and restoring neurobehavioral function. The in silico analysis revealed significant affinities between clove oils and two tested esterase enzymes (ACh and BuChE) that were more than or similar to the four neurotransmitters “dopamine, serotonin, norepinephrine, and glutamic acid” and the co-crystallized ligands NAG, MES, and GZ5. These results highlight the therapeutic potential of EOC in combating the toxic effects of OTA and pave the way for future research into the mechanisms of action and therapeutic applications of natural compounds in the prevention and treatment of poison-induced diseases. Full article
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20 pages, 16578 KiB  
Article
Characterization of MADS-Box Gene Family in Isatis indigotica and Functional Study of IiAP1 in Regulating Floral Transition and Formation
by Yanqin Ma, Yanhong Lan, Ju Li, Haicheng Long, Yujie Zhou, Zhi Li, Mingjun Miao, Jian Zhong, Haie Wang, Wei Chang, Ziqin Xu and Liang Yang
Plants 2025, 14(1), 129; https://doi.org/10.3390/plants14010129 - 4 Jan 2025
Viewed by 509
Abstract
In flowering plants, MADS-box genes play regulatory roles in flower induction, floral initiation, and floral morphogenesis. Isatis indigotica (I. indigotica) is a traditional Chinese medicinal plant. However, available information concerning MADS-box genes in I. indigotica is insufficient. Based on [...] Read more.
In flowering plants, MADS-box genes play regulatory roles in flower induction, floral initiation, and floral morphogenesis. Isatis indigotica (I. indigotica) is a traditional Chinese medicinal plant. However, available information concerning MADS-box genes in I. indigotica is insufficient. Based on the sequencing data of the I. indigotica transcriptome, we identified MADS-box gene-encoding transcription factors that have been shown to play critical roles in developmental processes. In this study, 102 I. indigotica MADS-box genes were identified and categorized into type I (Mα, Mβ, and Mγ) and type II (MIKCC and MIKC*) subfamilies. IiMADS proteins in the same cluster had similar motifs and gene structures. In total, 102 IiMADS-box genes were unevenly distributed across seven chromosomes. APETALA1 (AP1) encodes a MADS-box transcription factor which plays a pivotal role in determining floral meristem identity and also modulates developmental processes within the perianth. We then selected IiAP1 for functional studies and found that it is localized to the nucleus and highly expressed in inflorescence, sepals, and petals. The ectopic expression of IiAP1 in Arabidopsis resulted in early flowering and abnormal development of floral organs. Taken together, this research study carried out a systematic identification of MADS-box genes in I. indigotica and demonstrated that IiAP1 takes part in the regulation of floral transition and formation. Full article
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20 pages, 4904 KiB  
Article
Genome-Wide Identification and Expression Analysis of Amino Acid/Auxin Permease (AAAP) Genes in Grapes (Vitis vinifera L.) Under Abiotic Stress and During Development
by Xufeng Guo, Na He, Biying Huang, Chongyao Chen, Yanxia Zhang, Xiaoyu Yang, Jie Li and Zhigang Dong
Plants 2025, 14(1), 128; https://doi.org/10.3390/plants14010128 - 4 Jan 2025
Viewed by 608
Abstract
Amino acids in wine grapes function as precursors for various secondary metabolites and play a vital role in plant growth, development, and stress resistance. The amino acid/auxin permease (AAAP) genes encode a large family of transporters; however, the identification and function [...] Read more.
Amino acids in wine grapes function as precursors for various secondary metabolites and play a vital role in plant growth, development, and stress resistance. The amino acid/auxin permease (AAAP) genes encode a large family of transporters; however, the identification and function of the AAAP gene family in grapes remain limited. Consequently, we conducted a comprehensive bioinformatics analysis of all AAAP genes in grapes, encompassing genome sequence analysis, conserved protein domain identification, chromosomal localization, phylogenetic relationship analysis, and gene expression profiling. This study identified 60 VvAAAP genes, distributed on 14 chromosomes and classified into eight subfamilies. Microarray and transcriptome data revealed that most VvAAAP genes decrease during development, but VvAAAP7 and VvAAAP33 gradually increase. VvAAAP23 and VvAAAP46 exhibited significantly higher expression levels, while VvAAAP30 demonstrated lower expression when subjected to salt and drought stress. VvAAAP genes exhibited diverse expression patterns, suggesting that the AAAP gene family possesses both diversity and specific functions in grapes. Furthermore, the expression patterns of VvAAAP genes analyzed by RT-qPCR facilitate further investigation into the biological functions of individual genes in different tissues. These findings provide valuable insights into the continued analysis of the AAAP gene family’s functions in grapes. Full article
(This article belongs to the Special Issue Plant Phylogeny, Taxonomy and Evolution)
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21 pages, 5477 KiB  
Article
Bioinformatics and Expression Profiling of the DHHC-CRD S-Acyltransferases Reveal Their Roles in Growth and Stress Response in Woodland Strawberry (Fragaria vesca)
by Si Gu, Xinghua Nie, Amal George, Kyle Tyler, Yu Xing, Ling Qin and Baoxiu Qi
Plants 2025, 14(1), 127; https://doi.org/10.3390/plants14010127 - 4 Jan 2025
Viewed by 635
Abstract
Protein S-acyl transferases (PATs) are a family of enzymes that catalyze protein S-acylation, a post-translational lipid modification involved in protein membrane targeting, trafficking, stability, and protein–protein interaction. S-acylation plays important roles in plant growth, development, and stress responses. Here, we report the genome-wide [...] Read more.
Protein S-acyl transferases (PATs) are a family of enzymes that catalyze protein S-acylation, a post-translational lipid modification involved in protein membrane targeting, trafficking, stability, and protein–protein interaction. S-acylation plays important roles in plant growth, development, and stress responses. Here, we report the genome-wide analysis of the PAT family genes in the woodland strawberry (Fragaria vesca), a model plant for studying the economically important Rosaceae family. In total, 21 ‘Asp-His-His-Cys’ Cys Rich Domain (DHHC-CRD)-containing sequences were identified, named here as FvPAT1-21. Expression profiling by reverse transcription quantitative PCR (RT-qPCR) showed that all the 21 FvPATs were expressed ubiquitously in seedlings and different tissues from adult plants, with notably high levels present in vegetative tissues and young fruits. Treating seedlings with hormones indole-3-acetic acid (IAA), abscisic acid (ABA), and salicylic acid (SA) rapidly increased the transcription of most FvPATs. A complementation assay in yeast PAT mutant akr1 and auto-S-acylation assay of one FvPAT (FvPAT19) confirmed its enzyme activity where the Cys in the DHHC motif was required. An AlphaFold prediction of the DHHC and the mutated DHHC155S of FvPAT19 provided further proof of the importance of C155 in fatty acid binding. Together, our data clearly demonstrated that S-acylation catalyzed by FvPATs plays important roles in growth, development, and stress signaling in strawberries. These preliminary results could contribute to further research to understand S-acylation in strawberries and plants in general. Full article
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23 pages, 5026 KiB  
Article
The Influence of Edaphic and Climatic Factors on the Morphophysiological Behavior of Young Argan Plants Cultivated in Orchards: A Comparative Analysis of Three Regions in Southwest Morocco
by Fatima Ezzahra Tiouidji, Assma Oumasst, Salma Tabi, Naima Chabbi, Abdelaziz Mimouni, Meriyem Koufan, Naima Ait Aabd, Abdelghani Tahiri, Youssef Karra, Jamal Hallam, Redouan Qessaoui, Rachid Bouharroud, Fouad Elame, Nadya Wahid and Ahmed Wifaya
Plants 2025, 14(1), 126; https://doi.org/10.3390/plants14010126 - 4 Jan 2025
Viewed by 776
Abstract
Argania spinosa (L.) Skeels is a unique endemic species in Morocco, renowned for its ecological characteristics and socio-economic importance. In Morocco, recent years have seen an exacerbation of the harmful effects of climate change, leading to an alarming decline in the natural regeneration [...] Read more.
Argania spinosa (L.) Skeels is a unique endemic species in Morocco, renowned for its ecological characteristics and socio-economic importance. In Morocco, recent years have seen an exacerbation of the harmful effects of climate change, leading to an alarming decline in the natural regeneration of this species in its original habitats. It seems that the only viable solution lies in the domestication of this genetic heritage. This study marks the first in-depth investigation of the impact of various climatic and edaphic factors on the morphological and physiological traits of Argania spinosa young plants, assessed in six separate orchards and observed over four seasons (March 2022 (Winter), June 2022 (Summer), November 2022 (Autumn), and March 2023 (Winter)). A climatic assessment was carried out at each site, including measurements of rainfall, maximum and minimum temperatures, mean temperature, air temperature, and wind speed. The soil was analyzed for the pH, electrical conductivity (EC), water content, limestone (CaCO3), Kjeldahl nitrogen (N), available phosphorus (P2O5), organic matter (OM), and carbon/nitrogen ratio (C/N). To gain a better understanding of the morphophysiological characteristics of young argan seedlings, we carried out various observations, such as measuring the height and diameter of aerial parts, and the water content of leaves (WCL) and branches (WCB), quantifying chlorophyll (mg/m2) and leaf area. The results revealed a significant impact of edaphic and climatic factors on the morphophysiological parameters of young argan trees. Results revealed significant correlations of young argan plants between edaphic and climatic factors and morphophysiological parameters. The Tamjloujt site, characterized by protective vegetation cover, showed optimal growth conditions with the highest leaf and branch water content (46.89 ± 4.06% and 37.76 ± 3.51%, respectively), maximum height growth (91.33 ± 28.68 mm), trunk diameter (24.85 ± 3.78 mm), and leaf surface area (69.33 ± 19.28 mm2) during Summer 2022. The Saharan zone of Laqsabi exhibited peak chlorophyll concentrations (506.9 ± 92.25 mg/m2) during Autumn 2022, due to high temperatures. The mountainous environment of Imoulass negatively impacted plant growth (mean height: 52.61 ± 12.37 mm; diameter: 6.46 ± 1.57 mm) due to harsh climatic and edaphic conditions. This research provides vital knowledge regarding the environmental factors influencing the establishment of young argan plants within the Argan Biosphere Reserve. This contributes to the development of more effective domestication strategies and the restoration of agroecosystems. The aim is to use this knowledge to promote the rehabilitation and sustainability of argan agroecosystems. Full article
(This article belongs to the Collection Forest Environment and Ecology)
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21 pages, 4124 KiB  
Article
The Effect of Exogenous Melatonin on the Photosynthetic Characteristics of Rhododendron simsii Under Cadmium Stress
by Haochen Di, Ying Liang, Yuting Gong, Songheng Jin and Yanxia Xu
Plants 2025, 14(1), 125; https://doi.org/10.3390/plants14010125 - 3 Jan 2025
Viewed by 678
Abstract
Rhododendron simsii (R. simsii), a significant ornamental plant species, is adversely affected by the severe soil heavy metal pollution resulting from rapid industrialization, particularly in terms of its growth environment. Cadmium (Cd), a representative heavy metal pollutant, poses a significant threat [...] Read more.
Rhododendron simsii (R. simsii), a significant ornamental plant species, is adversely affected by the severe soil heavy metal pollution resulting from rapid industrialization, particularly in terms of its growth environment. Cadmium (Cd), a representative heavy metal pollutant, poses a significant threat to plant growth and photosynthetic physiology. Despite the importance of understanding Cd stress resistance in rhododendrons, research in this area is limited. This study focused on the role of exogenous melatonin (MT) in mitigating Cd-induced stress, emphasizing its impact on photosynthetic physiology. Gas exchange parameters, prompt and delayed fluorescence (DF), 820 nm modulated reflectance (Mr820), and antioxidant enzyme activity, were measured. The findings revealed that under Cd stress, MT-free treatment imposed a more severe limitation on both stomatal and non-stomatal processes in R. simsii leaves, significantly reducing the net photosynthetic rate. In contrast, exogenous MT improved photosynthetic efficiency by increasing the maximum photochemical efficiency of photosystem II, the quantum yield of electron transport, and the photosynthetic performance index. DF and Mr820 analysis demonstrated that MT provided robust protection to both the donor and receptor sides of photosystems I and II. Furthermore, MT significantly decreased malondialdehyde (MDA) content, a marker of oxidative stress, and enhanced the activity of antioxidant enzymes, including superoxide dismutase (SOD) and guaiacol peroxidase (POD). In conclusion, exogenous MT plays a critical role in alleviating Cd-induced stress by enhancing antioxidant defense mechanisms and safeguarding the photosynthetic apparatus, thereby improving the Cd tolerance of R. simsii. Full article
(This article belongs to the Special Issue Ornamental Plants and Urban Gardening II)
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18 pages, 7193 KiB  
Article
A High-Quality Phased Genome Assembly of Stinging Nettle (Urtica dioica ssp. dioica)
by Kaede Hirabayashi, Christopher R. Dumigan, Matúš Kučka, Diana M. Percy, Gea Guerriero, Quentin Cronk, Michael K. Deyholos and Marco Todesco
Plants 2025, 14(1), 124; https://doi.org/10.3390/plants14010124 - 3 Jan 2025
Cited by 1 | Viewed by 831
Abstract
Stinging nettles (Urtica dioica) have a long history of association with human civilization, having been used as a source of textile fibers, food and medicine. Here, we present a chromosome-level, phased genome assembly for a diploid female clone of Urtica dioica [...] Read more.
Stinging nettles (Urtica dioica) have a long history of association with human civilization, having been used as a source of textile fibers, food and medicine. Here, we present a chromosome-level, phased genome assembly for a diploid female clone of Urtica dioica from Romania. Using a combination of PacBio HiFi, Oxford Nanopore, and Illumina sequencing, as well as Hi-C long-range interaction data (using a novel Hi-C protocol presented here), we assembled two haplotypes of 574.9 Mbp (contig N50 = 10.9 Mbp, scaffold N50 = 44.0 Mbp) and 521.2 Mbp (contig N50 = 13.5 Mbp, scaffold N50 = 48.0 Mbp), with assembly BUSCO scores of 92.6% and 92.2%. We annotated 20,333 and 20,140 genes for each haplotype, covering over 90% of the complete BUSCO genes and including two copies of a gene putatively encoding the neurotoxic peptide urthionin, which could contribute to nettle’s characteristic sting. Despite its relatively small size, the nettle genome displays very high levels of repetitiveness, with transposable elements comprising more than 60% of the genome, as well as considerable structural variation. This genome assembly represents an important resource for the nettle community and will enable the investigation of the genetic basis of the many interesting characteristics of this species. Full article
(This article belongs to the Special Issue Nettle: From Weed to Green Enterprise)
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17 pages, 4954 KiB  
Article
Elucidating the Underlying Allelopathy Effects of Euphorbia jolkinii on Arundinella hookeri Using Metabolomics Profiling
by Xue Xiao, Zuyan Ma, Kai Zhou, Qiongmei Niu, Qin Luo, Xin Yang, Xiaohui Chu and Guilian Shan
Plants 2025, 14(1), 123; https://doi.org/10.3390/plants14010123 - 3 Jan 2025
Viewed by 552
Abstract
Euphorbia jolkinii dominates the subalpine meadows in Shangri-La (Southwest China) owing to its potent allelopathic effects. However, the effects underlying its allelopathy require further characterization at the physiological and molecular levels. In this study, the physiological, biochemical, and metabolic mechanisms underlying E. jolkinii [...] Read more.
Euphorbia jolkinii dominates the subalpine meadows in Shangri-La (Southwest China) owing to its potent allelopathic effects. However, the effects underlying its allelopathy require further characterization at the physiological and molecular levels. In this study, the physiological, biochemical, and metabolic mechanisms underlying E. jolkinii allelopathy were investigated using Arundinella hookeri as a receptor plant. The treatment of A. hookeri seedlings with E. jolkinii aqueous extract (EJAE) disrupted their growth by inhibiting photosynthesis, disrupting oxidation systems, and increasing soluble sugar accumulation and chlorophyll synthesis. Collectively, this causes severe impairment accompanied by abnormal photosynthesis and reduced biomass accumulation. Moreover, EJAE treatment suppressed gibberellin, indoleacetic acid, zeatin, salicylic acid, and jasmonic acid levels while promoting abscisic acid accumulation. Further metabolomic analyses identified numerous differentially abundant metabolites primarily enriched in the α-linolenic, phenylpropanoid, and flavonoid biosynthesis pathways in EJAE-treated A. hookeri seedlings. This study demonstrated that E. jolkinii exhibits potent and comprehensive allelopathic effects on receptor plants, including a significant disruption of endogenous hormone synthesis, the inhibition of photosynthesis, an impairment of membrane and oxidation systems, and changes in crucial metabolic processes associated with α-linolenic, phenylpropanoid, and flavonoid biosynthesis. Thus, our study provides a solid theoretical foundation for understanding the regulatory mechanisms underlying E. jolkinii allelopathy. Full article
(This article belongs to the Special Issue Stress Biology of Turfgrass—2nd Edition)
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32 pages, 2274 KiB  
Article
Old Plants for New Food Products? The Diachronic Human Ecology of Wild Herbs in the Western Alps
by Mousaab Alrhmoun, Aurora Romano, Naji Sulaiman and Andrea Pieroni
Plants 2025, 14(1), 122; https://doi.org/10.3390/plants14010122 - 3 Jan 2025
Viewed by 795
Abstract
This ethnobotanical study examines the traditional knowledge and usage patterns of wild plants in the western Alps, specifically within the Ubaye and Bellino Valleys, through a comparative analysis of data collected from 1983 (published in 1990) to 2024. Our study aims to assess [...] Read more.
This ethnobotanical study examines the traditional knowledge and usage patterns of wild plants in the western Alps, specifically within the Ubaye and Bellino Valleys, through a comparative analysis of data collected from 1983 (published in 1990) to 2024. Our study aims to assess the change in plant usage, species diversity, and the changing roles of plants in local traditions in the western Alpine mountain ecosystems. While the 1983 survey documented medicinal uses centered around pastoralist practices, the 2024 data highlight a notable increase in the use of synanthropic plants, now utilized both medicinally and as food. Several species such as Allium sativum, Artemisia absinthium, and Urtica dioica have shown resilience and continuity in local cultural practices, maintaining medicinal, culinary, and ritual significance across the four decades. The 1983 survey documented the greatest variety of species (101), a number that decreased in subsequent studies. The 2009 survey identified 36 species not previously recorded in 1983, and the 2024 field study noted an additional 20 species. The study highlights the economic potential of several wild species in these alpine areas, such as Achillea, Artemisia, Verbascum, Veronica, Viola, Polygonum, Bunium, and Sorbus spp., which could be utilized for creating new herbal teas, artisanal beers, liqueurs, ice creams, sweets, and seasoned food products. Expanding the uses of these plants could not only preserve ethnobotanical knowledge but also stimulate local economies and support sustainable development in alpine communities. The documented temporal shifts in plant usage reflect broader cultural, ecological, and socio-economic changes, underscoring the importance of preserving biodiversity and traditional knowledge amidst ongoing environmental and societal shifts. This study underlines the need to conserve ethnobotanical heritage while adapting to the evolving landscape of the region. Future research could focus on exploring the role of these species in broader sustainability initiatives, including conservation strategies, ecosystem services, and community-based tourism while continuing to document the cultural dynamics influencing plant usage. Full article
(This article belongs to the Special Issue Plants and Peoples: Quo Vadis?)
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17 pages, 1529 KiB  
Article
Phycospheric Bacteria Alleviate the Stress of Erythromycin on Auxenochlorella pyrenoidosa by Regulating Nitrogen Metabolism
by Jiping Li, Ying Wang, Yuan Fang, Xingsheng Lyu, Zixin Zhu, Chenyang Wu, Zijie Xu, Wei Li, Naisen Liu, Chenggong Du and Yan Wang
Plants 2025, 14(1), 121; https://doi.org/10.3390/plants14010121 - 3 Jan 2025
Viewed by 526
Abstract
Macrolide pollution has attracted a great deal of attention because of its ecotoxic effects on microalgae, but the role of phycospheric bacteria under antibiotic stress remains unclear. This study explored the toxic effects of erythromycin (ERY) on the growth and nitrogen metabolism of [...] Read more.
Macrolide pollution has attracted a great deal of attention because of its ecotoxic effects on microalgae, but the role of phycospheric bacteria under antibiotic stress remains unclear. This study explored the toxic effects of erythromycin (ERY) on the growth and nitrogen metabolism of Auxenochlorella pyrenoidosa; then, it analyzed and predicted the effects of the composition and ecological function of phycospheric bacteria on microalgae under ERY stress. We found that 0.1, 1.0, and 10 mg/L ERY inhibited the growth and chlorophyll of microalgae, but the microalgae gradually showed enhanced growth abilities over the course of 21 days. As the exposure time progressed, the nitrate reductase activities of the microalgae gradually increased, but remained significantly lower than that of the control group at 21 d. NO3 concentrations in all treatment groups decreased gradually and were consistent with microalgae growth. NO2 concentrations in the three treatment groups were lower than those in the control group during ERY exposure over 21 d. ERY changed the community composition and diversity of phycospheric bacteria. The relative abundance of bacteria, such as unclassified-f-Rhizobiaceae, Mesorhizobium, Sphingopyxis, Aquimonas, and Blastomonas, varied to different degrees. Metabolic functions, such ABC transporters, the microbial metabolism in diverse environments, and the biosynthesis of amino acids, were significantly upregulated in the treatments of higher concentrations (1.0 and 10 mg/L). Higher concentrations of ERY significantly inhibited nitrate denitrification, nitrous oxide denitrification, nitrite denitrification, and nitrite and nitrate respiration. The findings of this study suggest that phycospheric bacteria alleviate antibiotic stress and restore the growth of microalgae by regulating nitrogen metabolism in the exposure system. Full article
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19 pages, 8551 KiB  
Article
Antifungal Activity of Genistein Against Phytopathogenic Fungi Valsa mali Through ROS-Mediated Lipid Peroxidation
by Fangjie Li, Chen Yang, Maoye Li, Su Liu, Kuo Xu and Xianjun Fu
Plants 2025, 14(1), 120; https://doi.org/10.3390/plants14010120 - 3 Jan 2025
Viewed by 504
Abstract
Valsa mali (V. mali) is a necrotrophic fungus responsible for apple Valsa canker, which significantly diminishes apple production yields and quality in China. Our serendipitous findings revealed that genistein significantly inhibits the mycelial growth of V. mali, with an inhibition [...] Read more.
Valsa mali (V. mali) is a necrotrophic fungus responsible for apple Valsa canker, which significantly diminishes apple production yields and quality in China. Our serendipitous findings revealed that genistein significantly inhibits the mycelial growth of V. mali, with an inhibition rate reaching 42.36 ± 3.22% at a concentration of 10 µg/mL. Scanning electron microscopy analysis revealed that genistein caused significant changes in the structure of V. mali, including mycelial contraction, distortion, deformity, collapse, and irregular protrusions. Transmission electron microscopy analysis revealed leakage of cellular contents, blurred cell walls, ruptured membranes, and organelle abnormalities. Genistein has been shown to increase reactive oxygen species levels in V. mali mycelia, as demonstrated by 2′,7′-dichlorofluorescin diacetate staining. This increase was associated with a decrease in superoxide dismutase activity alongside increases in catalase and peroxidase activities. These changes collectively disrupted the oxidative equilibrium, leading to the induction of oxidative stress. The transcriptomic analysis revealed 13 genes enriched in this process, linked to unsaturated fatty acid biosynthesis (three downregulated DEGs), saturated fatty acid biosynthesis (three upregulated and six downregulated DEGs), and fatty acid metabolism (four upregulated and nine downregulated DEGs). Additionally, the downregulated DEGs VMIG_07417 and VMIG_08675, which are linked to ergosterol biosynthesis, indicate possible changes in membrane composition. In conjunction with the qRT-PCR results, it is hypothesized that genistein exerts an antifungal effect on V. mali through ROS-mediated lipid peroxidation. This finding has the potential to contribute to the development of novel biological control agents for industrial crops. Full article
(This article belongs to the Special Issue Natural Compounds for Controlling Plant Pathogens)
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25 pages, 2386 KiB  
Article
Phytochemical Characterisation of Sorbus Species: Unveiling Flavonoid Profiles Related to Ploidy and Hybrid Origin
by Emina Korić, Violeta Milutinović, Alma Hajrudinović-Bogunić, Faruk Bogunić, Tatjana Kundaković-Vasović, Irma Gušić, Jelena Radović Selgrad, Kemal Durić and Haris Nikšić
Plants 2025, 14(1), 119; https://doi.org/10.3390/plants14010119 - 3 Jan 2025
Viewed by 595
Abstract
The genetic, morphological and taxonomic diversity of the genus Sorbus is due to homoploid and polyploid hybridisation, autopolyploidy and apomixis, which also influence the production and diversity of secondary metabolites, especially flavonoids. The aim of this study was to investigate the relationships and [...] Read more.
The genetic, morphological and taxonomic diversity of the genus Sorbus is due to homoploid and polyploid hybridisation, autopolyploidy and apomixis, which also influence the production and diversity of secondary metabolites, especially flavonoids. The aim of this study was to investigate the relationships and variations of flavonoids in terms of hybrid origin and ploidy level between the parental species and their hybrid derivatives. The sampling design included leaf material of the following Sorbus accessions from ten natural localities: parental taxa (di-, tri- and tetraploids of S. aria; diploid S. torminalis and S. aucuparia) and their di-, tri- and tetraploid hybrid derivatives from crosses of S. aria × S. torminalis (subg. Tormaria) as well as the tetraploid S. austriaca and S. bosniaca, which originate from crosses of S. aria × S. aucuparia (subg. Soraria). We analysed the flavonoid profiles from the leaf fractions by LC-MS. A total of 23 flavonoids were identified, including apigenin and luteolin derivatives, which distinguish the hybrid groups from each other. This profiling highlights the distinctiveness of the Tormaria and Soraria accessions and emphasises the potential of the subg. Tormaria for further research on bioactive compounds in biological studies. Full article
(This article belongs to the Special Issue Phytochemistry and Pharmacological Properties of Medicinal Plants)
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19 pages, 1878 KiB  
Article
Metal Biomonitoring Through Arboreal Species in Riparian Ecosystems: Pithecellobium dulce as a Bioindicator Species
by Sayuri Hernández-Maravilla, María Luisa Castrejón-Godínez, Efraín Tovar-Sánchez, Hugo Albeiro Saldarriaga-Noreña, Alexis Rodríguez, Marcos Eduardo Rosas-Ramírez and Patricia Mussali-Galante
Plants 2025, 14(1), 118; https://doi.org/10.3390/plants14010118 - 3 Jan 2025
Viewed by 479
Abstract
Water pollution by metals is a global environmental problem. In riparian ecosystems, metal pollution generates adverse effects on organisms and reduces water quality. The Cuautla River is of great ecological relevance and an important water supplier. However, it is polluted by multiple wastewater [...] Read more.
Water pollution by metals is a global environmental problem. In riparian ecosystems, metal pollution generates adverse effects on organisms and reduces water quality. The Cuautla River is of great ecological relevance and an important water supplier. However, it is polluted by multiple wastewater discharges from different origins, with toxic metals being the main pollutants. Therefore, environmental monitoring strategies based on bioindicator species are necessary to evaluate the ecosystem health of riparian ecosystems. Pithecellobium dulce (Roxb.) Benth is a tree species native to Mexico, widely distributed including in riparian ecosystems, and it is also established in contaminated sites. In this study, Cd, Cu, Pb, and Zn concentrations in water and sediment and in leaf and bark of adult P. dulce trees established in six sampling sites along the Cuautla’s riverbed were determined. Likewise, the genotoxic damage derived from metal exposure to leaves was evaluated. The results evidenced the presence of Cd and Pb in water and Cd, Cu, Pb, and Zn in sediment. P. dulce registered high levels of Cu, Pb, and Zn in both leaf and bark, showing higher concentrations in leaf than in bark. In addition, the greater the concentration of Pb in leaves, the greater the genotoxic damage observed, while the concentration of Cu and Zn did not show a relationship with the genotoxic damage in leaves. Overall, Cu and Pb concentrations in leaves enabled us to detect pollution gradients for these metals in water and sediment from the sampling sites. Due to its wide geographic distribution, establishment in polluted sites, and metal absorption capacity, P. dulce can be considered a bioindicator species for environmental health studies in riparian ecosystems contaminated with metals. Full article
(This article belongs to the Section Plant Ecology)
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21 pages, 6879 KiB  
Article
Overexpression of AtruLEA1 from Acer truncatum Bunge Enhanced Arabidopsis Drought and Salt Tolerance by Improving ROS-Scavenging Capability
by Shaofeng Li, Huijing Meng, Yanfei Yang, Jinna Zhao, Yongxiu Xia, Shaoli Wang, Fei Wang, Guangshun Zheng and Jianbo Li
Plants 2025, 14(1), 117; https://doi.org/10.3390/plants14010117 - 3 Jan 2025
Viewed by 483
Abstract
Late embryonic developmental abundant (LEA) genes play a crucial role in the response to abiotic stress and are important target genes for research on plant stress tolerance mechanisms. Acer truncatum Bunge is a promising candidate tree species for investigating the tolerance [...] Read more.
Late embryonic developmental abundant (LEA) genes play a crucial role in the response to abiotic stress and are important target genes for research on plant stress tolerance mechanisms. Acer truncatum Bunge is a promising candidate tree species for investigating the tolerance mechanism of woody plants against abiotic stress. In our previous study, AtruLEA1 was identified as being associated with seed drought tolerance. In this study, LEA1 was cloned from A. truncatum Bunge and functionally characterized. AtruLEA1 encodes an LEA protein and is located in the nucleus. Phylogenetic tree analysis revealed a recent affinity of the AtruLEA1 protein to AT3G15760.1. Overexpression of AtruLEA1 resulted in enhanced tolerance of Arabidopsis thaliana to drought and salt stress and heightened the ABA sensitivity. Compared to wild-type (WT) plants, plants with overexpressed AtruLEA1 exhibited increased activities of antioxidant enzymes under drought stress. Meanwhile, the ROS level of transgenic Arabidopsis was significantly less than that of the WT. Additionally, the stoma density and stoma openness of AtruLEA1 Arabidopsis were higher compared to those in the WT Arabidopsis under salt and drought stress conditions, which ensures that the biomass and relative water content of transgenic Arabidopsis are significantly better than those of the WT. These results indicated that AtruLEA1 was involved in salt and drought stress tolerances by maintaining ROS homeostasis, and its expression was positively regulated by abiotic stress. These results indicate a positive role of AtruLEA1 in drought and salt stress and provide theoretical evidence in the direction of cultivating resistant plants. Full article
(This article belongs to the Special Issue Long Distance Signaling in Plants, 2nd Edition)
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19 pages, 575 KiB  
Article
Comparative Analysis of Five Moroccan Thyme Species: Insights into Chemical Composition, Antioxidant Potential, Anti-Enzymatic Properties, and Insecticidal Effects
by Mohamed Ouknin, Hassan Alahyane, Naima Ait Aabd, Sara Elgadi, Youssef Lghazi and Lhou Majidi
Plants 2025, 14(1), 116; https://doi.org/10.3390/plants14010116 - 3 Jan 2025
Viewed by 571
Abstract
This study aimed to investigate the chemical composition and bioactivities of essential oils (EOs) from five Moroccan thyme species: Thymus broussonetii subsp. broussonetii, T. maroccanus, T. willdenowii, T. zygis subsp. gracilis, and T. satureioides, collected from various geographical regions. Gas [...] Read more.
This study aimed to investigate the chemical composition and bioactivities of essential oils (EOs) from five Moroccan thyme species: Thymus broussonetii subsp. broussonetii, T. maroccanus, T. willdenowii, T. zygis subsp. gracilis, and T. satureioides, collected from various geographical regions. Gas chromatography–mass spectrometry (GC-MS) identified thymol, p-cymene, borneol, γ-terpinene, carvacrol, α-pinene, and camphene as major constituents, with variations across species. Inductively coupled plasma atomic emission spectroscopy (ICP-AES) revealed important levels of calcium (450.6–712.2 mg/kg), potassium (255.4–420.7 mg/kg), magnesium (97.3–150.7 mg/kg), and iron (1.95–15.1 mg/kg). The EOs demonstrated strong antioxidant activity in DPPH, FRAP, and β-carotene bleaching assays. Insecticidal activity against Aphis gossypii revealed the highest efficacy with T. willdenowii EO (LC50 = 6.2 µL/mL), followed by T. maroccanus and T. zygis subsp. gracilis. Additionally, the EOs exhibited potent enzyme inhibitory effects at 1 mg/mL on acetylcholinesterase (83.1–96.4%), tyrosinase (77.5–89.6%), and α-glucosidase (79.4–89.5%). These findings suggest that thyme EOs, particularly from T. willdenowii, T. zygis, and T. maroccanus, are promising candidates for integrated pest management and natural enzyme inhibitors. Their potential applications in medicinal and pharmaceutical fields underscore the need for further research to optimize their use under specific conditions and dosages. Full article
(This article belongs to the Special Issue Essential Oils: Chemistry and Biology, and Their Interplay)
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21 pages, 652 KiB  
Review
Enhanced Phytoextraction Technologies for the Sustainable Remediation of Cadmium-Contaminated Soil Based on Hyperaccumulators—A Review
by Xuerui Cao, Qing Dong, Lihui Mao, Xiaoe Yang, Xiaozi Wang and Qingcheng Zou
Plants 2025, 14(1), 115; https://doi.org/10.3390/plants14010115 - 3 Jan 2025
Viewed by 744
Abstract
Heavy metal pollution in soil is a significant challenge around the world, particularly cadmium (Cd) contamination. In situ phytoextraction and remediation technology, particularly focusing on Cd hyperaccumulator plants, has proven to be an effective method for cleaning Cd-contaminated agricultural lands. However, this strategy [...] Read more.
Heavy metal pollution in soil is a significant challenge around the world, particularly cadmium (Cd) contamination. In situ phytoextraction and remediation technology, particularly focusing on Cd hyperaccumulator plants, has proven to be an effective method for cleaning Cd-contaminated agricultural lands. However, this strategy is often hindered by a long remediation cycle and low efficiency. To address these limitations, assisted phytoextraction has been proposed as a remediation strategy based on the modification of certain traits of plants or the use of different materials to enhance plant growth and increase metal absorption or bioavailability, ultimately aiming to improve the remediation efficiency of Cd hyperaccumulators. To thoroughly understand the progress of Cd hyperaccumulators in remediating Cd-polluted soils, this review article discusses the germplasm resources and assisted phytoextraction strategies for these plants, including microbial, agronomic measure, chelate, nanotechnology, and CO2-assisted phytoextraction, as well as integrated approaches. This review paper critically evaluates and analyzes the numerous approaches and the remediation potential of Cd hyperaccumulators and highlights current challenges and future research directions in this field. The goal is to provide a theoretical framework for the further development and application of Cd pollution remediation technologies in agricultural soils. Full article
(This article belongs to the Special Issue Soil Heavy Metal Pollution and Agricultural Product Quality)
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