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Biomolecules, Volume 9, Issue 12

December 2019 - 141 articles

Cover Story: The coagulation Factor FXIIIA2B2 complex lies at a crucial junction between bleeding and thrombosis in the hemostatic order of the blood coagulation pathway. The absence of a biophysical/all atom structure for this complex limits the ability of coagulation scientists from designing putative inhibitors/drugs against this complex for related pathological states. It also limits the understanding of structural–functional aspects for this complex. To fill this void, we present in our current study the first all atom model of this complex built using integrative hybrid approaches that combine techniques of mass spectrometry, molecular modeling/docking, and atomic force microscopy. Furthermore, based on the structure and thermodynamic patterns, we present insights into the assembly and the activation induced disassembly of this complex. View this paper.
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Articles (141)

  • Article
  • Open Access
7 Citations
3,251 Views
18 Pages

Critical Factors in Human Antizymes that Determine the Differential Binding, Inhibition, and Degradation of Human Ornithine Decarboxylase

  • Ju-Yi Hsieh,
  • Yen-Chin Liu,
  • I-Ting Cheng,
  • Chu-Ju Lee,
  • Yu-Hsuan Wang,
  • Yi-Shiuan Fang,
  • Yi-Liang Liu,
  • Guang-Yaw Liu and
  • Hui-Chih Hung

12 December 2019

Antizyme (AZ) is a protein that negatively regulates ornithine decarboxylase (ODC). AZ achieves this inhibition by binding to ODC to produce AZ-ODC heterodimers, abolishing enzyme activity and targeting ODC for degradation by the 26S proteasome. In t...

  • Article
  • Open Access
11 Citations
3,948 Views
12 Pages

Long-Lasting Effects of GSPE on Ileal GLP-1R Gene Expression Are Associated with a Hypomethylation of the GLP-1R Promoter in Female Wistar Rats

  • Iris Ginés,
  • Katherine Gil-Cardoso,
  • Claudio D’Addario,
  • Anastasia Falconi,
  • Fabio Bellia,
  • M Teresa Blay,
  • Ximena Terra,
  • Anna Ardévol,
  • Montserrat Pinent and
  • Raúl Beltrán-Debón

12 December 2019

Flavonoids have been shown to modulate GLP-1 in obesity. GLP-1 induces some of its effects through the intestinal GLP-1 receptor (GLP-1R), though no data exist on how flavonoids affect this receptor. Here, we examine how a dose of grape seed proantho...

  • Article
  • Open Access
5 Citations
2,624 Views
12 Pages

Model of Early Stage Intermediate in Respect to Its Final Structure

  • Piotr Fabian,
  • Katarzyna Stapor and
  • Irena Roterman

12 December 2019

The model, describing a method of determining the structure of an early intermediate in the process of protein folding to analyze nonredundant PDB protein bases, allows determining the relationship between the sequence of tetrapeptides and their stru...

  • Article
  • Open Access
12 Citations
5,481 Views
22 Pages

The Interplay between Retinal Pathways of Cholesterol Output and Its Effects on Mouse Retina

  • Alexey M. Petrov,
  • Artem A. Astafev,
  • Natalia Mast,
  • Aicha Saadane,
  • Nicole El-Darzi and
  • Irina A. Pikuleva

12 December 2019

In mammalian retina, cholesterol excess is mainly metabolized to oxysterols by cytochromes P450 27A1 (CYP27A1) and 46A1 (CYP46A1) or removed on lipoprotein particles containing apolipoprotein E (APOE). In contrast, esterification by sterol-O-acyltran...

  • Article
  • Open Access
10 Citations
6,415 Views
18 Pages

Generation of Lamprey Monoclonal Antibodies (Lampribodies) Using the Phage Display System

  • Khan M. A. Hassan,
  • John D. Hansen,
  • Brantley R. Herrin and
  • Chris T. Amemiya

12 December 2019

The variable lymphocyte receptors (VLRs) consist of leucine rich repeats (LRRs) and comprise the humoral antibodies produced by lampreys and hagfishes. The diversity of the molecules is generated by stepwise genomic rearrangements of LRR cassettes di...

  • Article
  • Open Access
2 Citations
2,941 Views
14 Pages

The Integrity of α-β-α Sandwich Conformation Is Essential for a Novel Adjuvant TFPR1 to Maintain Its Adjuvanticity

  • Qiao Li,
  • Xiuzhe Ning,
  • Yuepeng Wang,
  • Qing Zhu,
  • Yan Guo,
  • Hao Li,
  • Yusen Zhou and
  • Zhihua Kou

12 December 2019

TFPR1 is a novel peptide vaccine adjuvant we recently discovered. To define the structural basis and optimize its application as an adjuvant, we designed three different truncated fragments that have removed dominant B epitopes on TFPR1, and evaluate...

  • Article
  • Open Access
18 Citations
4,598 Views
17 Pages

Biological Evaluation, Molecular Docking, and SAR Studies of Novel 2-(2,4-Dihydroxyphenyl)-1H- Benzimidazole Analogues

  • Joanna Matysiak,
  • Alicja Skrzypek,
  • Monika Karpińska,
  • Kamila Czarnecka,
  • Paweł Szymański,
  • Marek Bajda and
  • Andrzej Niewiadomy

12 December 2019

In the present study, new 4-(1H-benzimidazol-2-yl)-benzene-1,3-diols, modified in both rings, have been synthesized and their efficacies as acetylcholinesterase (AChE) and butyrylcholinesterase (BuChE) inhibitors have been determined. The modified El...

  • Article
  • Open Access
29 Citations
6,962 Views
22 Pages

Lagerstroemia Speciosa (L.) Pers Leaf Extract Attenuates Lung Tumorigenesis via Alleviating Oxidative Stress, Inflammation and Apoptosis

  • Amria M. Mousa,
  • Nermin M. El-Sammad,
  • Abeer H. Abdel-Halim,
  • Nayera Anwar,
  • Wagdy K. B. Khalil,
  • Mahmoud Nawwar,
  • Amani N. Hashim,
  • Elsayed A. Elsayed and
  • Sherien K. Hassan

12 December 2019

One of the major etiological factors that account for lung cancer is tobacco use. Benzo(a)pyrene [B(a)P], one of the main constituents of tobacco smoke, has a key role in lung carcinogenesis. The present study was conducted to investigate the cytotox...

  • Article
  • Open Access
50 Citations
6,791 Views
16 Pages

RSM–GA Based Optimization of Bacterial PHA Production and In Silico Modulation of Citrate Synthase for Enhancing PHA Production

  • Apoorva Rao,
  • Shafiul Haque,
  • Hesham A. El-Enshasy,
  • Vineeta Singh and
  • Bhartendu Nath Mishra

12 December 2019

The inexhaustible nature and biodegradability of bioplastics like polyhydroxyalkanoates (PHAs) make them suitable assets to replace synthetic plastics. The eventual fate of these eco-friendly and non-toxic bioplastics relies upon the endeavors toward...

  • Review
  • Open Access
59 Citations
7,138 Views
25 Pages

11 December 2019

The n-3 and n-6 polyunsaturated fatty acid (PUFA) families are essential for important physiological processes. Their major source are marine ecosystems. The fatty acids (FAs) from phytoplankton, which are the primary producer of organic matter and P...

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Biomolecules - ISSN 2218-273X