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Biomolecules, Volume 10, Issue 7

July 2020 - 119 articles

Cover Story: Modifications greatly influence many aspects of tRNA structure and function. Bacillus subtilis sp subtilis strain 168 is the model gram-positive bacteria and the list of genes involved in tRNA modifications in this organism is far from complete. Mass spectrometry analysis of bulk tRNA extracted from B. subtilis combined with next-generation sequencing technologies and comparative genomic analyses have led to the identification of 41 tRNA modification genes with associated confidence scores. This work presents the most up-to-date list of tRNA modification genes in B. subtilis, identifies the gaps in knowledge, and lays the foundation for further work to decipher the physiological role of tRNA modifications in this important model organism. View this paper
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Articles (119)

  • Article
  • Open Access
12 Citations
4,645 Views
13 Pages

DLBCL Cells with Acquired Resistance to Venetoclax Are Not Sensitized to BIRD-2 But Can Be Resensitized to Venetoclax through Bcl-XL Inhibition

  • Martijn Kerkhofs,
  • Tamara Vervloessem,
  • Kinga B. Stopa,
  • Victoria M. Smith,
  • Meike Vogler and
  • Geert Bultynck

21 July 2020

Anti-apoptotic Bcl-2-family members are frequently dysregulated in both blood and solid cancers, contributing to their survival despite ongoing oncogenic stress. Yet, such cancer cells often are highly dependent on Bcl-2 for their survival, a feature...

  • Review
  • Open Access
57 Citations
9,208 Views
11 Pages

The COP9 Signalosome: A Multi-DUB Complex

  • Wolfgang Dubiel,
  • Supattra Chaithongyot,
  • Dawadschargal Dubiel and
  • Michael Naumann

21 July 2020

The COP9 signalosome (CSN) is a signaling platform controlling the cellular ubiquitylation status. It determines the activity and remodeling of ~700 cullin-RING ubiquitin ligases (CRLs), which control more than 20% of all ubiquitylation events in cel...

  • Article
  • Open Access
25 Citations
4,572 Views
9 Pages

Sphingolipid Analysis Indicate Lactosylceramide as a Potential Biomarker of Inflammatory Bowel Disease in Children

  • Aleksandra Filimoniuk,
  • Agnieszka Blachnio-Zabielska,
  • Monika Imierska,
  • Dariusz Marek Lebensztejn and
  • Urszula Daniluk

21 July 2020

An altered ceramide composition in patients with inflammatory bowel disease (IBD) has been reported recently. The aim of this study was to evaluate the concentrations of sphingolipids in the serum of treatment-naive children with newly diagnosed IBD...

  • Review
  • Open Access
8 Citations
4,925 Views
19 Pages

21 July 2020

WASp-interacting protein (WIP), a regulator of actin cytoskeleton assembly and remodeling, is a cellular multi-tasker and a key member of a network of protein–protein interactions, with significant impact on health and disease. Here, we attempt...

  • Article
  • Open Access
8 Citations
4,496 Views
22 Pages

21 July 2020

Mitochondria are double-membrane organelles that continuously undergo fission and fusion. Outer mitochondrial membrane fusion is mediated by the membrane proteins mitofusin 1 (Mfn1) and mitofusin 2 (Mfn2), carrying a GTP hydrolyzing domain (GTPase) a...

  • Article
  • Open Access
36 Citations
5,034 Views
16 Pages

Compound Prunetin Induces Cell Death in Gastric Cancer Cell with Potent Anti-Proliferative Properties: In Vitro Assay, Molecular Docking, Dynamics, and ADMET Studies

  • Preethi Vetrivel,
  • Seong Min Kim,
  • Sang Eun Ha,
  • Hun Hwan Kim,
  • Pritam Bhagwan Bhosale,
  • Kalaiselvi Senthil and
  • Gon Sup Kim

21 July 2020

Gastric cancer is the common type of malignancy positioned at second in mortality rate causing burden worldwide with increasing treatment options. Prunetin (PRU) is an O-methylated flavonoid that belongs to the group of isoflavone executing beneficia...

  • Feature Paper
  • Article
  • Open Access
22 Citations
4,674 Views
16 Pages

Dual-Functioning Antibacterial Eugenol-Derived Plasticizers for Polylactide

  • Wenxiang Xuan,
  • Karin Odelius and
  • Minna Hakkarainen

20 July 2020

Dual-functioning additives with plasticizing and antibacterial functions were designed by exploiting the natural aromatic compound eugenol and green platform chemical levulinic acid or valeric acid that can be produced from biobased resources. One-po...

  • Article
  • Open Access
5 Citations
3,236 Views
9 Pages

20 July 2020

The bacterial flagellar motor is a reversible rotary molecular nanomachine, which couples ion flux across the cytoplasmic membrane to torque generation. It comprises a rotor and multiple stator complexes, and each stator complex functions as an ion c...

  • Review
  • Open Access
15 Citations
7,480 Views
24 Pages

20 July 2020

Prion diseases are fatal, transmissible neurodegenerative disorders whose pathogenesis is driven by the misfolding, self-templating and cell-to-cell spread of the prion protein. Other neurodegenerative diseases such as Alzheimer’s disease, Park...

  • Communication
  • Open Access
15 Citations
4,497 Views
14 Pages

20 July 2020

Intrinsically-disordered protein (IDP) characterization was an amazing change of paradigm in our classical sequence-structure-function theory. Moreover, IDPs are over-represented in major disease pathways and are now often targeted using small molecu...

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Biomolecules - ISSN 2218-273X