The utilization of saline–alkali lands and the competition between medicinal plants and grain crops are urgent issues. This study aimed to evaluate the effects of combined biochar and phosphogypsum application on soil physicochemical properties, microbial communities, and safflower growth, yield, and bioactive component accumulation in moderately saline–alkali soil of western Jilin, and to identify key soil factors driving these responses. To achieve this, outdoor pot experiments were conducted using safflower (
Carthamus tinctorius L.), with the application of 1% biochar + 1% phosphogypsum to moderately saline–alkali soil. The results showed that the amendment significantly reduced bulk density (BD), pH, sodium adsorption ratio (SAR), total alkalinity (TA), and exchangeable sodium percentage (ESP), while increasing soil water content (SWC), soil organic matter (SOM), nitrogen, phosphorus, potassium, and beneficial ions. Soil sucrase, urease, alkaline phosphatase, and catalase activities were enhanced. Copiotrophic taxa (Pseudomonadota,
Sphingomonas,
Vicinamibacter) increased, whereas oligotrophic taxa (Gemmatimonadetes,
Longimicrobium,
Luteitalea) decreased, with stronger effects on bacteria than fungi. Safflower growth indices improved; leaf Na
+/K
+ ratio, superoxide radicals, and malondialdehyde decreased; and soluble protein, proline, and antioxidant enzyme activities increased. Bioactive components (hydroxysafflor yellow A, kaempferol) and yield reached 1.41%, 0.056%, and 343.23 mg/plant, representing 1.74–27.68-fold increases over moderate and mild saline–alkali soils. Correlation analysis identified SOM, total nitrogen (TN), available phosphorus (AP), BD, SWC, pH, SAR, TA, and ESP as key factors. In conclusion, co-application of 1% biochar and 1% phosphogypsum improves soil physicochemical and microbial properties, alleviates saline–alkali stress, and enhances safflower quality and yield.
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