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12 Results Found

  • Review
  • Open Access
26 Citations
4,888 Views
18 Pages

16 February 2023

DNA topoisomerases have an essential role in resolving topological problems that arise due to the double-helical structure of DNA. They can recognise DNA topology and catalyse diverse topological reactions by cutting and re-joining DNA ends. Type IA...

(This article belongs to the Special Issue Advances in Structure, Function and Molecular Targeting of DNA Topoisomerases)
  • Article
  • Open Access
3 Citations
3,375 Views
20 Pages

How Do Gepotidacin and Zoliflodacin Stabilize DNA Cleavage Complexes with Bacterial Type IIA Topoisomerases? 1. Experimental Definition of Metal Binding Sites

  • Harry Morgan,
  • Robert A. Nicholls,
  • Anna J. Warren,
  • Simon E. Ward,
  • Gwyndaf Evans,
  • Fei Long,
  • Garib N. Murshudov,
  • Ramona Duman and
  • Benjamin D. Bax

30 October 2024

One of the challenges for experimental structural biology in the 21st century is to see chemical reactions happen. Staphylococcus aureus (S. aureus) DNA gyrase is a type IIA topoisomerase that can create temporary double-stranded DNA breaks to regula...

(This article belongs to the Section Molecular Pharmacology)
  • Article
  • Open Access
5 Citations
3,976 Views
19 Pages

How Do Gepotidacin and Zoliflodacin Stabilize DNA-Cleavage Complexes with Bacterial Type IIA Topoisomerases? 2. A Single Moving Metal Mechanism

  • Robert A. Nicholls,
  • Harry Morgan,
  • Anna J. Warren,
  • Simon E. Ward,
  • Fei Long,
  • Garib N. Murshudov,
  • Dmitry Sutormin and
  • Benjamin D. Bax

DNA gyrase is a bacterial type IIA topoisomerase that can create temporary double-stranded DNA breaks to regulate DNA topology and an archetypical target of antibiotics. The widely used quinolone class of drugs use a water–metal ion bridge in i...

(This article belongs to the Section Molecular Pharmacology)
  • Article
  • Open Access
2 Citations
5,122 Views
19 Pages

In Silico Activity Prediction and Docking Studies of the Binding Mechanisms of Levofloxacin Structure Derivatives to Active Receptor Sites of Bacterial Type IIA Topoisomerases

  • Elena V. Uspenskaya,
  • Vasilisa A. Sukhanova,
  • Ekaterina S. Kuzmina,
  • Tatyana V. Pleteneva,
  • Olga V. Levitskaya,
  • Timur M. Garaev and
  • Anton V. Syroeshkin

20 December 2023

The need for new antimicrobial agents (AntAg) is driven by the persistent antibiotic resistance in microorganisms, as well as the increasing frequency of pandemics. Due to the deficiency of AntAg, research aimed at developing speedy approaches to fin...

  • Article
  • Open Access
24 Citations
4,021 Views
23 Pages

Compounds targeting bacterial topoisomerases are of interest for the development of antibacterial agents. Our previous studies culminated in the synthesis and characterization of small-molecular weight thiosemicarbazides as the initial prototypes of...

(This article belongs to the Section Biochemistry)
  • Article
  • Open Access
10 Citations
4,651 Views
12 Pages

Lipophilicity Studies on Thiosemicarbazide Derivatives

  • Agata Paneth,
  • Anna Hawrył,
  • Tomasz Plech,
  • Mirosław Hawrył,
  • Ryszard Świeboda,
  • Dominika Janowska,
  • Monika Wujec and
  • Piotr Paneth

The lipophilicity of two series of thiosemicarbazide derivatives was assessed by the RP-HPLC method with the RP-18 chromatographic column and the methanol–water mixture as the mobile phase. Distribution coefficients logPHPLC were compared to calculat...

(This article belongs to the Section Medicinal Chemistry)
  • Review
  • Open Access
62 Citations
10,369 Views
15 Pages

Type IIA topoisomerases allow DNA double helical strands to pass through each other by generating transient DNA double strand breaks βDSBs), and in so doing, resolve torsional strain that accumulates during transcription, DNA replication, chromo...

(This article belongs to the Special Issue DNA Topoisomerases)
  • Review
  • Open Access
14 Citations
5,071 Views
21 Pages

Type IA Topoisomerases as Targets for Infectious Disease Treatments

  • Ahmed Seddek,
  • Thirunavukkarasu Annamalai and
  • Yuk-Ching Tse-Dinh

Infectious diseases are one of the main causes of death all over the world, with antimicrobial resistance presenting a great challenge. New antibiotics need to be developed to provide therapeutic treatment options, requiring novel drug targets to be...

(This article belongs to the Section Antimicrobial Agents and Resistance)
  • Article
  • Open Access
3 Citations
5,781 Views
17 Pages

Two-Dimensional Gel Electrophoresis to Study the Activity of Type IIA Topoisomerases on Plasmid Replication Intermediates

  • Jorge Cebrián,
  • Victor Martínez,
  • Pablo Hernández,
  • Dora B. Krimer,
  • María-José Fernández-Nestosa and
  • Jorge B. Schvartzman

17 November 2021

DNA topoisomerases are the enzymes that regulate DNA topology in all living cells. Since the discovery and purification of ω (omega), when the first were topoisomerase identified, the function of many topoisomerases has been examined. However, their...

(This article belongs to the Section Genetics and Genomics)
  • Article
  • Open Access
34 Citations
6,583 Views
17 Pages

A 2.8 Å Structure of Zoliflodacin in a DNA Cleavage Complex with Staphylococcus aureus DNA Gyrase

  • Harry Morgan,
  • Magdalena Lipka-Lloyd,
  • Anna J. Warren,
  • Naomi Hughes,
  • John Holmes,
  • Nicolas P. Burton,
  • Eshwar Mahenthiralingam and
  • Ben D. Bax

13 January 2023

Since 2000, some thirteen quinolones and fluoroquinolones have been developed and have come to market. The quinolones, one of the most successful classes of antibacterial drugs, stabilize DNA cleavage complexes with DNA gyrase and topoisomerase IV (t...

(This article belongs to the Special Issue Advances in Structure, Function and Molecular Targeting of DNA Topoisomerases)
  • Review
  • Open Access
20 Citations
7,138 Views
16 Pages

25 February 2021

Gyrase is a bacterial type IIA topoisomerase that catalyzes negative supercoiling of DNA. The enzyme is essential in bacteria and is a validated drug target in the treatment of bacterial infections. Inhibition of gyrase activity is achieved by compet...

(This article belongs to the Section Chemical Biology)
  • Review
  • Open Access
31 Citations
7,232 Views
15 Pages

Gyrase is a type IIA topoisomerase that catalyzes negative supercoiling of DNA. The enzyme consists of two GyrA and two GyrB subunits. It is believed to introduce negative supercoils into DNA by converting a positive DNA node into a negative node thr...

(This article belongs to the Special Issue DNA Topoisomerases)