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Microorganisms publishes Special Issues to create collections of papers on specific topics, with the aim of building a community of authors and readers to discuss the latest research and develop new ideas and research directions. Special Issues are led by Guest Editors, who are experts on the topic and all Special Issue submissions follow MDPI's standard editorial process. The journal’s Editor-in-Chief and/or designated Editorial Board Member will oversee Guest Editor appointments and Special Issue proposals, checking their content for relevance and ensuring the suitability of the material for the journal. The papers published in a Special Issue will be collected and displayed on a dedicated page of the journal’s website. Further information on MDPI's Special Issue policies and Guest Editor responsibilities can be found here. For any inquiries related to a Special Issue, please contact the Editorial Office.

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Clinical Applications and Validation of Probiotics: Exploring Therapeutic and Preventive Potential Across Diverse Medical Conditions

edited by

Francesco Broccolo

and

Marcello Romeo

submission deadline 31 Aug 2025 | 1 articles | Viewed by 681 | Submission Open

Keywords: probiotics; microbiota; clinical validation; therapeutic applications; preventive therapy; novel probiotic blends; medical conditions; specific strains

(This special issue belongs to the Section Medical Microbiology)

Microbial Solutions for Sustainable Resource Recovery and Environmental Remediation

edited by

Chunqiao Xiao

submission deadline 31 Aug 2025 | 2 articles | Viewed by 635 | Submission Open

Keywords: bioleaching; microbial resource recovery; bioremediation; nutrient recycling; sustainable bioprocesses; synthetic biology; bioenergy; wastewater treatment; biodegradation; microbial electrochemistry

(This special issue belongs to the Section Environmental Microbiology)

Microbiome Research: Past, Present, and Future

edited by

Eric Patridge

submission deadline 31 Aug 2025 | 1 articles | Viewed by 539 | Submission Open

Keywords: human microbiome; high-throughput technologies; host– microbe interactions; disease and health; gene expression/metatranscriptomics; functional genomics/orthologs; bioinformatics advances in microbial research; new bacterial pathogens/virulence factors; microbial dysbiosis/homeostasis

(This special issue belongs to the Section Microbiomes)

New Advancements in Clinical Microbiology: Surveillance, Diagnosis, and Treatment

edited by

Zhi Ruan

, João Pedro Rueda Furlan,

William Ricardo Calero-Cáceres

and

Fábio P. Sellera

submission deadline 31 Aug 2025 | 1 articles | Viewed by 517 | Submission Open

Keywords: clinical microbiology; surveillance; diagnostic methodologies; treatment strategies; molecular diagnostics; genomic sequencing; bioinformatics; pathogen detection; antimicrobial resistance; point-of-care tests

(This special issue belongs to the Section Medical Microbiology)

Insights into the Microbial Ecology of Extreme Freshwater Systems

edited by

Angelina Lo Giudice

Carmen Rizzo

and Maria Papale

submission deadline 31 Aug 2025 | Viewed by 467 | Submission Open

Keywords: biodiversity; extreme environments; extremophiles; ecological roles; microbes

(This special issue belongs to the Section Environmental Microbiology)

Infections, Immune Mechanisms and Host-Pathogen Interactions

edited by Cristina Tato

submission deadline 31 Aug 2025 | 1 articles | Viewed by 326 | Submission Open

Keywords: immune evasion; innate immunity; adaptive immunity; opportunistic; neglected diseases; virulence; persistence; metabolism; cytokines; therapeutic targets

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Pathogen Infection and Public Health

edited by

José Arellano-Galindo

and Ana Estela Gamiño-Arroyo

submission deadline 31 Aug 2025 | 1 articles | Viewed by 315 | Submission Open

Keywords: infectious diseases; transmissible infections; outbreaks; population health; the relationship between the economy and health; migration's impact on health

(This special issue belongs to the Section Medical Microbiology)

The Use of Microbial Protein and Its Extraction

edited by

Katarzyna Pobiega

submission deadline 31 Aug 2025 | Viewed by 274 | Submission Open

Keywords: microbial protein (MP); single cell protein (SCP); Fungi; Yeast; bacteria; microalgae; extraction method; microbiological safety

(This special issue belongs to the Section Microbial Biotechnology)

Microbial Mechanisms for Soil Improvement and Plant Growth

edited by

Qicong Wu

and Hui Zhang

submission deadline 31 Aug 2025 | 1 articles | Viewed by 216 | Submission Open

Keywords: microbial adaptation; soil health; environmental stresses; plant growth promotion; nutrient cycling

(This special issue belongs to the Section Plant Microbe Interactions)

Aspergillus Infections in Patients with Cystic Fibrosis

edited by Maria Noni and Stavros E. Doudounakis

submission deadline 31 Aug 2025 | Viewed by 211 | Submission Open

Keywords: cystic fibrosis; fungal infections; CFTR modulators; respiratory infections; Aspergillus spp.; allergic bronchopulmonary aspergillosis; fungal bronchitis

(This special issue belongs to the Section Medical Microbiology)

Fungal Communities in Agriculture

edited by

Vlad Stoian

submission deadline 31 Aug 2025 | Viewed by 201 | Submission Open

Keywords: diversity; benneficial effects; negative effects; symbiosis; hyphal networks; biogeochemical cycles; organic matter; biocontrol; plant growth promotion; rhizosphere; resilience; ecosystem stability

(This special issue belongs to the Section Environmental Microbiology)

Bacterial Infections and Antimicrobial Resistance in Animal Populations

edited by

Kwang Won Seo

submission deadline 31 Aug 2025 | Viewed by 149 | Submission Open

Keywords: zoonotic foodborne bacteria; salmonellosis; antimicrobial resistance; virulence gene; multiple drug resistance; ESBL; beta-lactamases; PMQR; carbapenemases; MRSA

(This special issue belongs to the Section Veterinary Microbiology)

New Strategies for Antimicrobial Treatment

edited by Chen Fu

submission deadline 31 Aug 2025 | Viewed by 133 | Submission Open

Keywords: antimicrobial treatments; antimicrobial resistance; innovative strategies; new antimicrobial agents; clinical applications; alternative therapies; resistance mechanisms; combination therapies

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Research of Soil Microbial Communities

edited by Rodrigo Gouveia Taketani

submission deadline 31 Aug 2025 | Viewed by 113 | Submission Open

Keywords: soil microbial community; biogeochemical cycle; carbon sequestration; sustainable agriculture; microbial ecology; soil fertility; metagenome; nutrient cycling

(This special issue belongs to the Section Environmental Microbiology)

Probiotics and Their Health Benefits

edited by Yunhuan Liu

submission deadline 31 Aug 2025 | Viewed by 107 | Submission Open

Keywords: probiotics; beneficial microbiota; host health; diseases

(This special issue belongs to the Section Medical Microbiology)

Microbial Dynamics in Desert Ecosystems

edited by

Xiaoying Rong

submission deadline 31 Aug 2025 | Viewed by 96 | Submission Open

Keywords: microbial diversity; drought; arid and semiarid regions; adaptation; functional regulation

(This special issue belongs to the Section Environmental Microbiology)

Research on Fungal Infections and Antimicrobial Resistance

edited by Maryam Roudbary

submission deadline 31 Aug 2025 | Viewed by 93 | Submission Open

Keywords: fungal infections; drug-resistance; mechanism of resistance; fungi– host interaction; immunomodulators; whole-genome sequencing; novel antifungals

(This special issue belongs to the Section Medical Microbiology)

Molecular Studies of Microorganisms in Plant Growth and Utilization

edited by Chunhui Ma,

Fanfan Zhang

and

Rongzheng Huang

submission deadline 31 Aug 2025 | Viewed by 93 | Submission Open

Keywords: plant growth-promoting rhizobacteria; abiotic stress; crop utilization; ensiling

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Role of Microorganisms in Functional Dairy Products

edited by

Jasna Đorđević

submission deadline 31 Aug 2025 | Viewed by 91 | Submission Open

Keywords: functional foods; probiotics; lactic acid bacteria; fermentation; dairy biotechnology; sustainability

(This special issue belongs to the Section Food Microbiology)

Plant–Fungal Interactions in Biocontrol of Plant Diseases

edited by

Tong Liu

submission deadline 31 Aug 2025 | Viewed by 91 | Submission Open

Keywords: biocontrol fungi; plant– microbe interactions; endophytic fungi; mycoparasitism; induced systemic resistance (ISR); rhizosphere microbiome; secondary metabolites; sustainable plant disease management

(This special issue belongs to the Section Plant Microbe Interactions)

Microbial Diversity Research in Different Environments

edited by

Christian Anumudu

submission deadline 31 Aug 2025 | Viewed by 84 | Submission Open

Keywords: microbial diversity; microflora; metagenomic analysis; climate change; bioremediation; fermentation; immune system modulation; antimicrobials

(This special issue belongs to the Section Microbial Biotechnology)

Marine Probiotics and Postbiotics

edited by

Yannick Fleury

and

Clément Offret

submission deadline 31 Aug 2025 | Viewed by 75 | Submission Open

Keywords: marine microorganisms; probiotic; postbiotic

(This special issue belongs to the Section Medical Microbiology)

Microbial Contamination in Indoor Environments

edited by

Carla Viegas

submission deadline 31 Aug 2025 | Viewed by 73 | Submission Open

Keywords: indoor air quality; occupational exposure; microbial contamination; contextual information; sampling methods; assays

(This special issue belongs to the Section Environmental Microbiology)

Immune System and Commensal Microbiota

edited by

Yoshinobu Eishi

submission deadline 31 Aug 2025 | Viewed by 72 | Submission Open

Keywords: commensal microbiota; immune system; mechanisms of immune tolerance; microbial metabolites; therapeutic strategies

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Advances in the Use of Electroactive Microbes for Wastewater Treatment

edited by

Naoko Yoshida

submission deadline 31 Aug 2025 | Viewed by 68 | Submission Open

Keywords: electroactive microbes; microbial fuel cells; wastewater treatment

(This special issue belongs to the Section Microbial Biotechnology)

Genomic Insights into Parasite Epidemiology and Evolution

edited by Maria Luísa Lobo and

Olga Maria Guerreiro de Matos

submission deadline 31 Aug 2025 | Viewed by 67 | Submission Open

Keywords: molecular epidemiology; parasites; genomics; transmission dynamics; population genetics; host– parasite interactions; molecular diagnostics; antimicrobial resistance; phylogeography; bioinformatics

(This special issue belongs to the Section Public Health Microbiology)

Effect of Microbial Communities for Environmental Protection and Development of Agriculture, Second Edition

edited by Alejandro Rodriguez-Sanchez

submission deadline 31 Aug 2025 | Viewed by 64 | Submission Open

Keywords: environmental microbial communities; environmental protection; agriculture potentiation; bioremediation; ecosystem functioning; biotic and abiotic stresses

(This special issue belongs to the Section Environmental Microbiology)

Microbes in Wastewater Treatment

edited by Alejandro Rodriguez-Sanchez

submission deadline 31 Aug 2025 | Viewed by 58 | Submission Open

Keywords: water pollution; bioremediation; biotechnological processes; wastewater systems; microbial engineering

(This special issue belongs to the Section Environmental Microbiology)

Pathogenesis and Antibiotic Resistance Mechanisms of Fish Pathogens

edited by Ricardo Luiz Moro De Sousa and Nycolas Levy-Pereira

submission deadline 31 Aug 2025 | Viewed by 56 | Submission Open

Keywords: host– pathogen interactions; aquaculture; antibiotics

(This special issue belongs to the Section Veterinary Microbiology)

Oral Biofilms, 2nd Edition

edited by

Zvi Loewy

submission deadline 31 Aug 2025 | Viewed by 54 | Submission Open

Keywords: oral biofilms; biofilm infections; antibiotic treatment; pathogenesis

(This special issue belongs to the Section Biofilm)

Microbiological Advances and Strategies Toward Zero Rabies Deaths by 2030

edited by

Nidia Aréchiga Ceballos

submission deadline 31 Aug 2025 | Viewed by 53 | Submission Open

Keywords: rabies; zero by 30; rabies deaths

(This special issue belongs to the Section Virology)

Salmonella and Food Safety

edited by Gerardo Vazquez-Marrufo and

Ma Soledad Vázquez Garcidueñas

submission deadline 31 Aug 2025 | Viewed by 48 | Submission Open

Keywords: Salmonella enterica; serotype; genotype; stress resistance; biofilm; food contamination; virulence determinants; antibiotic resistance; omics studies; diagnostics

(This special issue belongs to the Section Food Microbiology)

Research on Arboviruses

edited by Monica Ferreira Moreira

submission deadline 31 Aug 2025 | Viewed by 39 | Submission Open

Keywords: Zika virus (ZIKV); mosquito eggs; Aedes aegypti; ZIKV evolutionary dynamics; East African ZIKV lineage

(This special issue belongs to the Section Virology)

Microbial Biotechnology: The Biodiversity, Properties and Benefits of Microorganisms in Medical, Clinical, Food and Environmental Fields

edited by

Karina Teixeira Magalhães-Guedes

and

Marcelo Andrés Umsza-Guez

submission deadline 15 Sep 2025 | 5 articles | Viewed by 11422 | Submission Open

Keywords: microbial biotechnology; microorganism diversity; biotechnological applications; functional foods; pathogen control

(This special issue belongs to the Section Microbial Biotechnology)

Sustainable Approaches to Mitigate Antimicrobial Resistance in the Environment

edited by

Emma Murphy

and

Gustavo Fehrenbach

submission deadline 15 Sep 2025 | 1 articles | Viewed by 583 | Submission Open

Keywords: antimicrobial resistance; environment; probiotics; antibiotic; bioremediation

(This special issue belongs to the Section Environmental Microbiology)

Microbial-Sourced Nutritional Supplements for Human and Animal

edited by

Zhi Wang

and

Yafan Cai

submission deadline 15 Sep 2025 | Viewed by 98 | Submission Open

Keywords: microbial-sourced; nutritional supplements; biosynthesis; fermentation; enzymes

(This special issue belongs to the Section Microbial Biotechnology)

Biotechnology for Environmental Remediation

edited by

Elena Efremenko

submission deadline 30 Sep 2025 | 9 articles | Viewed by 19642 | Submission Open

Keywords: biotechnology; bioremediation; environmental monitoring; biocatalysts; microbial enzymes; biodegradation; bio-inspired materials; pollutant degradation; detoxification; biosensors; biorecognition; consortia

(This special issue belongs to the Section Environmental Microbiology)

Molecular Identification and Phylogeny of Crops Pathogenic Fungi

edited by

Olga P. Gavrilova

Philipp B. Gannibal

and

Aleksandra S. Orina

submission deadline 30 Sep 2025 | 4 articles | Viewed by 12216 | Submission Open

Keywords: plant pathogenic fungi; taxonomy; phylogeny; new species; population; cereals; legumes; oilseeds; vegetables; fruits

(This special issue belongs to the Section Plant Microbe Interactions)

Microbiota: From the Environment to Humans, 2nd Edition

edited by

Elisa Bona

submission deadline 30 Sep 2025 | 5 articles | Viewed by 11771 | Submission Open

Keywords: microbial community; holobiont; environment; food; metagenome; metaproteome

(This special issue belongs to the Section Microbiomes)

Phloem Localized Insect Transmitted Bacteria Associated with Plant Diseases

edited by

Assunta Bertaccini

submission deadline 30 Sep 2025 | 7 articles | Viewed by 10389 | Submission Open

Keywords: phytopathogenic bacteria; ‘ Candidatus Phytoplasma’ species; ‘ Candidatus Liberibacter’ species and subspecies; plant disease; prevention; management; detection; identification; insect vectors

(This special issue belongs to the Section Plant Microbe Interactions)

Microbiome-Driven Agriculture: Transforming Sustainability and Resilience Through Functional Microbial Insights and Metagenomics

edited by

Nazrul Islam

submission deadline 30 Sep 2025 | 5 articles | Viewed by 9304 | Submission Open

Keywords: microbiome; agriculture; metagenomics

(This special issue belongs to the Section Environmental Microbiology)

Secondary Metabolism of Microorganisms, 3rd Edition

edited by

Carlos García-Estrada

and

Carlos Barreiro

submission deadline 30 Sep 2025 | 8 articles | Viewed by 9074 | Submission Open

(This special issue belongs to the Section Microbial Biotechnology)

Editorial Board Members’ Collection Series: Bacterial Infection

edited by

Jun-Hyung Cho

and

Garth Ehrlich

submission deadline 30 Sep 2025 | 5 articles | Viewed by 5111 | Submission Open

Keywords: bacterial pathogenesis; antimicrobial resistance; diagnostics and detection; therapeutic advances; prevention strategies; epidemiology and public health; host immune response; bacterial ecology and evolution

(This special issue belongs to the Section Medical Microbiology)

Microbial Interactions in Plant Adaptation to Abiotic and Biotic Stress

edited by Ayalew B. Mentewab

submission deadline 30 Sep 2025 | 4 articles | Viewed by 4659 | Submission Open

Keywords: abiotic stress; biotic stress; plant microbiome; environmental adaptation; microbial interactions

(This special issue belongs to the Section Plant Microbe Interactions)

Skin Microbiome

edited by

Zhe-Xue Quan

submission deadline 30 Sep 2025 | 3 articles | Viewed by 4397 | Submission Open

Keywords: skin health; skin microbes; multi-omics and bioinformatics; host-microbe relationship

(This special issue belongs to the Section Microbiomes)

Advances in Human Infection

edited by

Lorenzo Drago

submission deadline 30 Sep 2025 | 4 articles | Viewed by 4014 | Submission Open

Keywords: human; diseases; viral; bacterial; fungal

(This special issue belongs to the Section Medical Microbiology)

Ticks, Tick Microbiome and Tick-Borne Diseases

edited by

Yun Sang Cho

submission deadline 30 Sep 2025 | 1 articles | Viewed by 3953 | Submission Open

Keywords: ticks; tick-borne diseases; microbiome; tick control; tick-borne pathogens

(This special issue belongs to the Section Public Health Microbiology)

Microbial Biofilms: New Insights into Formation, Resistance and Control

edited by

Marius Stefan

submission deadline 30 Sep 2025 | 2 articles | Viewed by 3414 | Submission Open

Keywords: biofilm formation; biofilm surfaces; biofilm structure; multi-species biofilms; microbial communities; biofilm communication; biofilm cells resistance; biofilm control; new antibiofilm agents

(This special issue belongs to the Section Biofilm)

The Microbiome of the Urinary Tract: A Balance Between Eubiosis and Dysbiosis

edited by Michael Chrisofos and Ilias Giannakodimos

submission deadline 30 Sep 2025 | 2 articles | Viewed by 3057 | Submission Open

Keywords: microbiome; urinary tract infections; eubiosis and dysbiosis

(This special issue belongs to the Section Medical Microbiology)

Gut Microbiota: Influences and Impacts on Human Health

edited by

Shuangjiang Liu

and

Hao Zhou

submission deadline 30 Sep 2025 | 3 articles | Viewed by 2283 | Submission Open

Keywords: gut microbiota; microbiome– disease interaction; metabolic disorders; immune regulation; neurological conditions; gastrointestinal health; probiotics and gut health

(This special issue belongs to the Section Gut Microbiota)

Displaying special issue 301-350 on page 7 of 11.

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